Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:27:45 (2288057): wrapper (7.7.26015): starting
01:27:45 (2288057): wrapper: running run_atlas (--nthreads 4)
[2024-06-22 01:27:45] Arguments: --nthreads 4
[2024-06-22 01:27:45] Threads: 4
[2024-06-22 01:27:45] Checking for CVMFS
[2024-06-22 01:27:45] No cvmfs_config command found, will try listing directly
[2024-06-22 01:27:45] CVMFS is ok
[2024-06-22 01:27:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-22 01:27:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-22 01:27:45] Further information can be found at the LHC@home message board.
[2024-06-22 01:27:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-22 01:27:45] Checking for apptainer binary...
[2024-06-22 01:27:45] which: no apptainer in ((null))
[2024-06-22 01:27:45] apptainer is not installed, using version from CVMFS
[2024-06-22 01:27:45] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-22 01:27:46] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot64/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut16.grid.cesnet.cz
[2024-06-22 01:27:46] apptainer works
[2024-06-22 01:27:46] Set ATHENA_PROC_NUMBER=4
[2024-06-22 01:27:46] Set ATHENA_CORE_NUMBER=4
[2024-06-22 01:27:46] Starting ATLAS job with PandaID=6238919534
[2024-06-22 01:27:46] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot64/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-22 05:03:16]  *** The last 200 lines of the pilot log: ***
[2024-06-22 05:03:16] 2024-06-22 03:03:01,934 | INFO     | model: linear, x: [1719012518.0, 1719012579.0, 1719012640.0, 1719012701.0, 1719012762.0, 1719012823.0, 1719012884.0, 1719012945.0, 1719013006.0, 1719013067.0, 1719
[2024-06-22 05:03:16] 2024-06-22 03:03:01,934 | INFO     | sum of square deviations: 2710627567.5
[2024-06-22 05:03:16] 2024-06-22 03:03:01,935 | INFO     | sum of deviations: 95671188753.49998
[2024-06-22 05:03:16] 2024-06-22 03:03:01,936 | INFO     | mean x: 1719018770.5
[2024-06-22 05:03:16] 2024-06-22 03:03:01,936 | INFO     | mean y: 2295202.567961165
[2024-06-22 05:03:16] 2024-06-22 03:03:01,936 | INFO     | -- intersect: -60670211502.21562
[2024-06-22 05:03:16] 2024-06-22 03:03:01,936 | INFO     | intersect: -60670211502.21562
[2024-06-22 05:03:16] 2024-06-22 03:03:01,936 | INFO     | chi2: 4.227097333120524
[2024-06-22 05:03:16] 2024-06-22 03:03:01,936 | INFO     | current chi2=4.227097333120524 (change=-0.007914430790143246 %)
[2024-06-22 05:03:16] 2024-06-22 03:03:01,936 | INFO     | right removable region: 205
[2024-06-22 05:03:16] 2024-06-22 03:03:01,937 | INFO     | model: linear, x: [1719012823.0, 1719012884.0, 1719012945.0, 1719013006.0, 1719013067.0, 1719013128.0, 1719013189.0, 1719013250.0, 1719013311.0, 1719013372.0, 1719
[2024-06-22 05:03:16] 2024-06-22 03:03:01,937 | INFO     | sum of square deviations: 2710627567.5
[2024-06-22 05:03:16] 2024-06-22 03:03:01,938 | INFO     | sum of deviations: 48250149538.0
[2024-06-22 05:03:16] 2024-06-22 03:03:01,938 | INFO     | mean x: 1719019075.5
[2024-06-22 05:03:16] 2024-06-22 03:03:01,938 | INFO     | mean y: 2334836.6796116503
[2024-06-22 05:03:16] 2024-06-22 03:03:01,938 | INFO     | -- intersect: -30596825463.32701
[2024-06-22 05:03:16] 2024-06-22 03:03:01,938 | INFO     | intersect: -30596825463.32701
[2024-06-22 05:03:16] 2024-06-22 03:03:01,939 | INFO     | chi2: 1.641870403731331
[2024-06-22 05:03:16] 2024-06-22 03:03:01,939 | INFO     | current chi2=1.641870403731331 (change=61.15536929886727 %)
[2024-06-22 05:03:16] 2024-06-22 03:03:01,939 | INFO     | model: linear, x: [1719013128.0, 1719013189.0, 1719013250.0, 1719013311.0, 1719013372.0, 1719013433.0, 1719013494.0, 1719013555.0, 1719013616.0, 1719013677.0, 1719
[2024-06-22 05:03:16] 2024-06-22 03:03:01,939 | INFO     | sum of square deviations: 2518000700.0
[2024-06-22 05:03:16] 2024-06-22 03:03:01,940 | INFO     | sum of deviations: 7312274776.999999
[2024-06-22 05:03:16] 2024-06-22 03:03:01,940 | INFO     | mean x: 1719019228.0
[2024-06-22 05:03:16] 2024-06-22 03:03:01,940 | INFO     | mean y: 2367250.7562189056
[2024-06-22 05:03:16] 2024-06-22 03:03:01,940 | INFO     | -- intersect: -4989665095.415254
[2024-06-22 05:03:16] 2024-06-22 03:03:01,940 | INFO     | intersect: -4989665095.415254
[2024-06-22 05:03:16] 2024-06-22 03:03:01,941 | INFO     | chi2: 0.05711924485952787
[2024-06-22 05:03:16] 2024-06-22 03:03:01,941 | INFO     | current chi2=0.05711924485952787 (change=96.52108688178323 %)
[2024-06-22 05:03:16] 2024-06-22 03:03:01,941 | INFO     | model: linear, x: [1719013433.0, 1719013494.0, 1719013555.0, 1719013616.0, 1719013677.0, 1719013738.0, 1719013799.0, 1719013860.0, 1719013921.0, 1719013982.0, 1719
[2024-06-22 05:03:16] 2024-06-22 03:03:01,941 | INFO     | sum of square deviations: 2334722845.0
[2024-06-22 05:03:16] 2024-06-22 03:03:01,942 | INFO     | sum of deviations: 1276388095.0
[2024-06-22 05:03:16] 2024-06-22 03:03:01,942 | INFO     | mean x: 1719019380.5
[2024-06-22 05:03:16] 2024-06-22 03:03:01,942 | INFO     | mean y: 2372220.8673469387
[2024-06-22 05:03:16] 2024-06-22 03:03:01,942 | INFO     | -- intersect: -937412078.1741419
[2024-06-22 05:03:16] 2024-06-22 03:03:01,943 | INFO     | intersect: -937412078.1741419
[2024-06-22 05:03:16] 2024-06-22 03:03:01,943 | INFO     | chi2: 0.001942742691637124
[2024-06-22 05:03:16] 2024-06-22 03:03:01,943 | INFO     | current chi2=0.001942742691637124 (change=96.5987948607954 %)
[2024-06-22 05:03:16] 2024-06-22 03:03:01,943 | INFO     | model: linear, x: [1719013738.0, 1719013799.0, 1719013860.0, 1719013921.0, 1719013982.0, 1719014043.0, 1719014104.0, 1719014165.0, 1719014226.0, 1719014287.0, 1719
[2024-06-22 05:03:16] 2024-06-22 03:03:01,943 | INFO     | sum of square deviations: 2160561440.0
[2024-06-22 05:03:16] 2024-06-22 03:03:01,944 | INFO     | sum of deviations: 548555981.0000007
[2024-06-22 05:03:16] 2024-06-22 03:03:01,944 | INFO     | mean x: 1719019533.0
[2024-06-22 05:03:16] 2024-06-22 03:03:01,944 | INFO     | mean y: 2372856.157068063
[2024-06-22 05:03:16] 2024-06-22 03:03:01,944 | INFO     | -- intersect: -434077794.5048164
[2024-06-22 05:03:16] 2024-06-22 03:03:01,945 | INFO     | intersect: -434077794.5048164
[2024-06-22 05:03:16] 2024-06-22 03:03:01,949 | INFO     | chi2: 0.001469249567091233
[2024-06-22 05:03:16] 2024-06-22 03:03:01,949 | INFO     | current chi2=0.001469249567091233 (change=24.372405392856447 %)
[2024-06-22 05:03:16] 2024-06-22 03:03:01,949 | INFO     | left removable region: 40
[2024-06-22 05:03:16] 2024-06-22 03:03:01,949 | INFO     | model: linear, x: [1719014958.0, 1719015019.0, 1719015080.0, 1719015141.0, 1719015202.0, 1719015263.0, 1719015324.0, 1719015385.0, 1719015446.0, 1719015507.0, 1719
[2024-06-22 05:03:16] 2024-06-22 03:03:01,949 | INFO     | sum of square deviations: 1392881930.0
[2024-06-22 05:03:16] 2024-06-22 03:03:01,950 | INFO     | sum of deviations: 1090153569.9999998
[2024-06-22 05:03:16] 2024-06-22 03:03:01,950 | INFO     | mean x: 1719019960.0
[2024-06-22 05:03:16] 2024-06-22 03:03:01,950 | INFO     | mean y: 2371821.933333333
[2024-06-22 05:03:16] 2024-06-22 03:03:01,950 | INFO     | -- intersect: -1343037078.8018904
[2024-06-22 05:03:16] 2024-06-22 03:03:01,951 | INFO     | intersect: -1343037078.8018904
[2024-06-22 05:03:16] 2024-06-22 03:03:01,951 | INFO     | chi2: 0.0010161368489453133
[2024-06-22 05:03:16] 2024-06-22 03:03:01,951 | INFO     | -- intersect: -1343037078.8018904
[2024-06-22 05:03:16] 2024-06-22 03:03:01,951 | INFO     | current memory leak: 0.78 B/s (using 165 data points, chi2=0.00)
[2024-06-22 05:03:16] 2024-06-22 03:03:01,951 | INFO     | ..............................
[2024-06-22 05:03:16] 2024-06-22 03:03:01,952 | INFO     | . Timing measurements:
[2024-06-22 05:03:16] 2024-06-22 03:03:01,952 | INFO     | . get job = 0 s
[2024-06-22 05:03:16] 2024-06-22 03:03:01,952 | INFO     | . initial setup = 1 s
[2024-06-22 05:03:16] 2024-06-22 03:03:01,952 | INFO     | . payload setup = 9 s
[2024-06-22 05:03:16] 2024-06-22 03:03:01,952 | INFO     | . stage-in = 0 s
[2024-06-22 05:03:16] 2024-06-22 03:03:01,952 | INFO     | . payload execution = 12854 s
[2024-06-22 05:03:16] 2024-06-22 03:03:01,952 | INFO     | . stage-out = 0 s
[2024-06-22 05:03:16] 2024-06-22 03:03:01,952 | INFO     | . log creation = 0 s
[2024-06-22 05:03:16] 2024-06-22 03:03:01,952 | INFO     | ..............................
[2024-06-22 05:03:16] 2024-06-22 03:03:02,040 | INFO     | 
[2024-06-22 05:03:16] 2024-06-22 03:03:02,041 | INFO     | job summary report
[2024-06-22 05:03:16] 2024-06-22 03:03:02,041 | INFO     | --------------------------------------------------
[2024-06-22 05:03:16] 2024-06-22 03:03:02,041 | INFO     | PanDA job id: 6238919534
[2024-06-22 05:03:16] 2024-06-22 03:03:02,041 | INFO     | task id: 40024040
[2024-06-22 05:03:16] 2024-06-22 03:03:02,041 | INFO     | errors: (none)
[2024-06-22 05:03:16] 2024-06-22 03:03:02,041 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-22 05:03:16] 2024-06-22 03:03:02,041 | INFO     | pilot state: finished 
[2024-06-22 05:03:16] 2024-06-22 03:03:02,041 | INFO     | transexitcode: 0
[2024-06-22 05:03:16] 2024-06-22 03:03:02,041 | INFO     | exeerrorcode: 0
[2024-06-22 05:03:16] 2024-06-22 03:03:02,041 | INFO     | exeerrordiag: 
[2024-06-22 05:03:16] 2024-06-22 03:03:02,041 | INFO     | exitcode: 0
[2024-06-22 05:03:16] 2024-06-22 03:03:02,041 | INFO     | exitmsg: OK
[2024-06-22 05:03:16] 2024-06-22 03:03:02,041 | INFO     | cpuconsumptiontime: 47911 s
[2024-06-22 05:03:16] 2024-06-22 03:03:02,041 | INFO     | nevents: 400
[2024-06-22 05:03:16] 2024-06-22 03:03:02,042 | INFO     | neventsw: 0
[2024-06-22 05:03:16] 2024-06-22 03:03:02,042 | INFO     | pid: 2307958
[2024-06-22 05:03:16] 2024-06-22 03:03:02,042 | INFO     | pgrp: 2307958
[2024-06-22 05:03:16] 2024-06-22 03:03:02,042 | INFO     | corecount: 4
[2024-06-22 05:03:16] 2024-06-22 03:03:02,042 | INFO     | event service: False
[2024-06-22 05:03:16] 2024-06-22 03:03:02,042 | INFO     | sizes: {0: 2385352, 1: 2386899, 9: 2387105, 12: 2387133, 12867: 2417001, 12870: 2425983, 12872: 2426167, 12880: 2426337}
[2024-06-22 05:03:16] 2024-06-22 03:03:02,042 | INFO     | --------------------------------------------------
[2024-06-22 05:03:16] 2024-06-22 03:03:02,042 | INFO     | 
[2024-06-22 05:03:16] 2024-06-22 03:03:02,042 | INFO     | executing command: ls -lF /scratch/boinc/var/slot64/slots/1
[2024-06-22 05:03:16] 2024-06-22 03:03:02,130 | WARNING  | process 2307958 is no longer using CPU - aborting
[2024-06-22 05:03:16] 2024-06-22 03:03:02,131 | INFO     | aborting job monitoring since job object (job id=6238919534) has expired
[2024-06-22 05:03:16] 2024-06-22 03:03:02,148 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-22 05:03:16] 2024-06-22 03:03:02,149 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-22 05:03:16] 2024-06-22 03:03:02,149 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-22 05:03:16] 2024-06-22 03:03:02,149 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-22 05:03:16] 2024-06-22 03:03:02,149 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-22 05:03:16] 2024-06-22 03:03:02,149 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-22 05:03:16] 2024-06-22 03:03:02,149 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-22 05:03:16] 2024-06-22 03:03:02,149 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-22 05:03:16] 2024-06-22 03:03:02,149 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-22 05:03:16] 2024-06-22 03:03:02,149 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-22 05:03:16] 2024-06-22 03:03:02,149 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-22 05:03:16] 2024-06-22 03:03:02,149 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-22 05:03:16] 2024-06-22 03:03:02,150 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-22 05:03:16] 2024-06-22 03:03:02,150 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-22 05:03:16] 2024-06-22 03:03:02,150 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-22 05:03:16] 2024-06-22 03:03:02,150 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-22 05:03:16] 2024-06-22 03:03:02,150 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-22 05:03:16] 2024-06-22 03:03:02,150 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-22 05:03:16] 2024-06-22 03:03:02,150 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-22 05:03:16] 2024-06-22 03:03:02,150 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-22 05:03:16] 2024-06-22 03:03:02,150 | INFO     | job 6238919534 has completed (purged errors)
[2024-06-22 05:03:16] 2024-06-22 03:03:02,150 | INFO     | overall cleanup function is called
[2024-06-22 05:03:16] 2024-06-22 03:03:03,158 | INFO     | --- collectZombieJob: --- 10, [2307958]
[2024-06-22 05:03:16] 2024-06-22 03:03:03,158 | INFO     | zombie collector waiting for pid 2307958
[2024-06-22 05:03:16] 2024-06-22 03:03:03,158 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-22 05:03:16] 2024-06-22 03:03:04,163 | INFO     | collected zombie processes
[2024-06-22 05:03:16] 2024-06-22 03:03:04,163 | INFO     | will now attempt to kill all subprocesses of pid=2307958
[2024-06-22 05:03:16] 2024-06-22 03:03:04,397 | INFO     | process IDs to be killed: [2307958] (in reverse order)
[2024-06-22 05:03:16] 2024-06-22 03:03:04,603 | WARNING  | found no corresponding commands to process id(s)
[2024-06-22 05:03:16] 2024-06-22 03:03:04,604 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-22 05:03:16] 2024-06-22 03:03:04,624 | INFO     | did not find any defunct processes belonging to 2307958
[2024-06-22 05:03:16] 2024-06-22 03:03:04,638 | INFO     | did not find any defunct processes belonging to 2307958
[2024-06-22 05:03:16] 2024-06-22 03:03:04,638 | INFO     | ready for new job
[2024-06-22 05:03:16] 2024-06-22 03:03:04,638 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-22 05:03:16] 2024-06-22 03:03:04,640 | INFO     | *************************************
[2024-06-22 05:03:16] 2024-06-22 03:03:04,641 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-22 05:03:16] 2024-06-22 03:03:04,641 | INFO     | *************************************
[2024-06-22 05:03:16] 2024-06-22 03:03:04,641 | INFO     | 
[2024-06-22 05:03:16] 2024-06-22 03:03:04,646 | INFO     | architecture information:
[2024-06-22 05:03:16] 2024-06-22 03:03:04,647 | INFO     | executing command: cat /etc/os-release
[2024-06-22 05:03:16] 2024-06-22 03:03:04,667 | INFO     | cat /etc/os-release:
[2024-06-22 05:03:16] NAME="CentOS Linux"
[2024-06-22 05:03:16] VERSION="7 (Core)"
[2024-06-22 05:03:16] ID="centos"
[2024-06-22 05:03:16] ID_LIKE="rhel fedora"
[2024-06-22 05:03:16] VERSION_ID="7"
[2024-06-22 05:03:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-22 05:03:16] ANSI_COLOR="0;31"
[2024-06-22 05:03:16] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-22 05:03:16] HOME_URL="https://www.centos.org/"
[2024-06-22 05:03:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-22 05:03:16] 
[2024-06-22 05:03:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-22 05:03:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-22 05:03:16] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-22 05:03:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-22 05:03:16] 
[2024-06-22 05:03:16] 2024-06-22 03:03:04,667 | INFO     | *************************************
[2024-06-22 05:03:16] 2024-06-22 03:03:05,170 | INFO     | executing command: df -mP /scratch/boinc/var/slot64/slots/1
[2024-06-22 05:03:16] 2024-06-22 03:03:05,192 | INFO     | sufficient remaining disk space (3149918109696 B)
[2024-06-22 05:03:16] 2024-06-22 03:03:05,192 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-22 05:03:16] 2024-06-22 03:03:05,192 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-22 05:03:16] 2024-06-22 03:03:05,193 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-22 05:03:16] 2024-06-22 03:03:05,193 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-06-22 05:03:16] 2024-06-22 03:03:05,193 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-22 05:03:16] 2024-06-22 03:03:05,194 | INFO     | found 0 job(s) in 20 queues
[2024-06-22 05:03:16] 2024-06-22 03:03:05,194 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-22 05:03:16] 2024-06-22 03:03:05,195 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-22 05:03:16] 2024-06-22 03:03:05,471 | INFO     | all data control threads have been joined
[2024-06-22 05:03:16] 2024-06-22 03:03:05,535 | INFO     | all job control threads have been joined
[2024-06-22 05:03:16] 2024-06-22 03:03:05,639 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-22 05:03:16] 2024-06-22 03:03:05,639 | INFO     | aborting loop
[2024-06-22 05:03:16] 2024-06-22 03:03:05,998 | INFO     | all payload control threads have been joined
[2024-06-22 05:03:16] 2024-06-22 03:03:06,197 | INFO     | [job] retrieve thread has finished
[2024-06-22 05:03:16] 2024-06-22 03:03:06,273 | INFO     | [job] validate thread has finished
[2024-06-22 05:03:16] 2024-06-22 03:03:06,476 | INFO     | [data] control thread has finished
[2024-06-22 05:03:16] 2024-06-22 03:03:06,524 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-22 05:03:16] 2024-06-22 03:03:06,540 | INFO     | [job] control thread has finished
[2024-06-22 05:03:16] 2024-06-22 03:03:06,619 | INFO     | [job] create_data_payload thread has finished
[2024-06-22 05:03:16] 2024-06-22 03:03:06,644 | INFO     | [job] job monitor thread has finished
[2024-06-22 05:03:16] 2024-06-22 03:03:06,720 | INFO     | [payload] validate_post thread has finished
[2024-06-22 05:03:16] 2024-06-22 03:03:06,758 | INFO     | [payload] validate_pre thread has finished
[2024-06-22 05:03:16] 2024-06-22 03:03:07,005 | INFO     | [payload] control thread has finished
[2024-06-22 05:03:16] 2024-06-22 03:03:07,051 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-22 05:03:16] 2024-06-22 03:03:07,166 | INFO     | [payload] execute_payloads thread has finished
[2024-06-22 05:03:16] 2024-06-22 03:03:07,199 | INFO     | [data] copytool_out thread has finished
[2024-06-22 05:03:16] 2024-06-22 03:03:07,367 | INFO     | [data] copytool_in thread has finished
[2024-06-22 05:03:16] 2024-06-22 03:03:07,535 | INFO     | [payload] failed_post thread has finished
[2024-06-22 05:03:16] 2024-06-22 03:03:08,054 | INFO     | [job] queue monitor thread has finished
[2024-06-22 05:03:16] 2024-06-22 03:03:09,199 | INFO     | [data] queue_monitor thread has finished
[2024-06-22 05:03:16] 2024-06-22 03:03:10,129 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47665601168448)>', '<ExcThread(monitor, started 47665781442304)>']
[2024-06-22 05:03:16] 2024-06-22 03:03:10,219 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-22 05:03:16] 2024-06-22 03:03:10,219 | INFO     | [monitor] control thread has ended
[2024-06-22 05:03:16] 2024-06-22 03:03:15,154 | INFO     | all workflow threads have been joined
[2024-06-22 05:03:16] 2024-06-22 03:03:15,154 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-22 05:03:16] 2024-06-22 03:03:15,154 | INFO     | traces error code: 0
[2024-06-22 05:03:16] 2024-06-22 03:03:15,155 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-22 05:03:16] 2024-06-22 03:03:15,272 [wrapper] ==== pilot stdout END ====
[2024-06-22 05:03:16] 2024-06-22 03:03:15,279 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-22 05:03:16] 2024-06-22 03:03:15,283 [wrapper] pilotpid: 2300208
[2024-06-22 05:03:16] 2024-06-22 03:03:15,288 [wrapper] Pilot exit status: 0
[2024-06-22 05:03:16] 2024-06-22 03:03:15,303 [wrapper] pandaids: 6238919534
[2024-06-22 05:03:16] 2024-06-22 03:03:15,409 [wrapper] cleanup supervisor_pilot 3371679 2300209
[2024-06-22 05:03:16] 2024-06-22 03:03:15,414 [wrapper] Test setup, not cleaning
[2024-06-22 05:03:16] 2024-06-22 03:03:15,417 [wrapper] ==== wrapper stdout END ====
[2024-06-22 05:03:16] 2024-06-22 03:03:15,421 [wrapper] ==== wrapper stderr END ====
[2024-06-22 05:03:16] 2024-06-22 03:03:15,451 [wrapper] apfmon messages muted
[2024-06-22 05:03:16]  *** Error codes and diagnostics ***
[2024-06-22 05:03:16]     "exeErrorCode": 0,
[2024-06-22 05:03:16]     "exeErrorDiag": "",
[2024-06-22 05:03:16]     "pilotErrorCode": 0,
[2024-06-22 05:03:16]     "pilotErrorDiag": "",
[2024-06-22 05:03:16]  *** Listing of results directory ***
[2024-06-22 05:03:16] total 878640
[2024-06-22 05:03:16] -rw-r--r-- 1 boinc boinc    469766 Jun 20 17:25 pilot3.tar.gz
[2024-06-22 05:03:16] -rwx------ 1 boinc boinc     32308 Jun 20 17:26 runpilot2-wrapper.sh
[2024-06-22 05:03:16] -rw-r--r-- 1 boinc boinc      5654 Jun 20 17:31 queuedata.json
[2024-06-22 05:03:16] -rw-r--r-- 1 boinc boinc       100 Jun 22 01:27 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-22 05:03:16] -rwxr-xr-x 1 boinc boinc      7986 Jun 22 01:27 run_atlas
[2024-06-22 05:03:16] -rw-r--r-- 1 boinc boinc       105 Jun 22 01:27 job.xml
[2024-06-22 05:03:16] -rw-r--r-- 1 boinc boinc      6642 Jun 22 01:27 init_data.xml
[2024-06-22 05:03:16] -rw-r--r-- 2 boinc boinc 611110357 Jun 22 01:27 EVNT.40024038._000025.pool.root.1
[2024-06-22 05:03:16] -rw-r--r-- 2 boinc boinc     17537 Jun 22 01:27 start_atlas.sh
[2024-06-22 05:03:16] drwxrwx--x 2 boinc boinc      4096 Jun 22 01:27 shared
[2024-06-22 05:03:16] -rw-r--r-- 2 boinc boinc    482465 Jun 22 01:27 input.tar.gz
[2024-06-22 05:03:16] -rw-r--r-- 1 boinc boinc         0 Jun 22 01:27 boinc_lockfile
[2024-06-22 05:03:16] -rw-r--r-- 1 boinc boinc      2483 Jun 22 01:27 pandaJob.out
[2024-06-22 05:03:16] -rw------- 1 boinc boinc       424 Jun 22 01:27 setup.sh.local
[2024-06-22 05:03:16] -rw------- 1 boinc boinc   1025961 Jun 22 01:28 agis_schedconf.cvmfs.json
[2024-06-22 05:03:16] -rw------- 1 boinc boinc   1321363 Jun 22 01:28 cric_ddmendpoints.json
[2024-06-22 05:03:16] drwx------ 4 boinc boinc      4096 Jun 22 01:28 pilot3
[2024-06-22 05:03:16] -rw------- 1 boinc boinc 281819673 Jun 22 05:02 HITS.40024040._001009.pool.root.1
[2024-06-22 05:03:16] -rw-r--r-- 1 boinc boinc       532 Jun 22 05:02 boinc_task_state.xml
[2024-06-22 05:03:16] -rw------- 1 boinc boinc      1036 Jun 22 05:02 memory_monitor_summary.json
[2024-06-22 05:03:16] -rw------- 1 boinc boinc        95 Jun 22 05:02 pilot_heartbeat.json
[2024-06-22 05:03:16] -rw------- 1 boinc boinc         0 Jun 22 05:02 agis_ddmendpoints.agis.ALL.json
[2024-06-22 05:03:16] -rw------- 1 boinc boinc    324303 Jun 22 05:02 log.40024040._001009.job.log.tgz.1
[2024-06-22 05:03:16] -rw------- 1 boinc boinc      7710 Jun 22 05:03 heartbeat.json
[2024-06-22 05:03:16] -rw-r--r-- 1 boinc boinc      8192 Jun 22 05:03 boinc_mmap_file
[2024-06-22 05:03:16] -rw-r--r-- 1 boinc boinc        28 Jun 22 05:03 wrapper_checkpoint.txt
[2024-06-22 05:03:16] -rw------- 1 boinc boinc      4345 Jun 22 05:03 pilotlog.txt
[2024-06-22 05:03:16] -rw------- 1 boinc boinc   1303071 Jun 22 05:03 log.40024040._001009.job.log.1
[2024-06-22 05:03:16] -rw------- 1 boinc boinc       357 Jun 22 05:03 output.list
[2024-06-22 05:03:16] -rw-r--r-- 1 boinc boinc       620 Jun 22 05:03 runtime_log
[2024-06-22 05:03:16] -rw------- 1 boinc boinc   1648640 Jun 22 05:03 result.tar.gz
[2024-06-22 05:03:16] -rw-r--r-- 1 boinc boinc     11410 Jun 22 05:03 runtime_log.err
[2024-06-22 05:03:16] -rw------- 1 boinc boinc       656 Jun 22 05:03 hiSLDmuqYe5n7Olcko1bjSoqABFKDmABFKDmOtvXDmawqKDmDokJ3n.diag
[2024-06-22 05:03:16] -rw-r--r-- 1 boinc boinc     21421 Jun 22 05:03 stderr.txt
[2024-06-22 05:03:16] HITS file was successfully produced:
[2024-06-22 05:03:16] -rw------- 1 boinc boinc 281819673 Jun 22 05:02 shared/HITS.pool.root.1
[2024-06-22 05:03:16]  *** Contents of shared directory: ***
[2024-06-22 05:03:16] total 874116
[2024-06-22 05:03:16] -rw-r--r-- 2 boinc boinc 611110357 Jun 22 01:27 ATLAS.root_0
[2024-06-22 05:03:16] -rw-r--r-- 2 boinc boinc     17537 Jun 22 01:27 start_atlas.sh
[2024-06-22 05:03:16] -rw-r--r-- 2 boinc boinc    482465 Jun 22 01:27 input.tar.gz
[2024-06-22 05:03:16] -rw------- 1 boinc boinc 281819673 Jun 22 05:02 HITS.pool.root.1
[2024-06-22 05:03:16] -rw------- 1 boinc boinc   1648640 Jun 22 05:03 result.tar.gz
05:03:17 (2288057): run_atlas exited; CPU time 47462.767969
05:03:17 (2288057): called boinc_finish(0)

</stderr_txt>
]]>

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