Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-21 17:07:17 (3902291): Detected: vboxwrapper 26206
2024-06-21 17:07:17 (3902291): Detected: BOINC client v7.16.6
2024-06-21 17:07:17 (3902291): Detected: VirtualBox VboxManage Interface (Version: 6.1.38)
2024-06-21 17:07:17 (3902291): Successfully copied 'init_data.xml' to the shared directory.
2024-06-21 17:07:18 (3902291): Create VM. (boinc_efd0ab059c49d0e6, slot#2)
2024-06-21 17:07:18 (3902291): Setting Memory Size for VM. (4300MB)
2024-06-21 17:07:18 (3902291): Setting CPU Count for VM. (3)
2024-06-21 17:07:18 (3902291): Setting Chipset Options for VM.
2024-06-21 17:07:18 (3902291): Setting Graphics Controller Options for VM.
2024-06-21 17:07:18 (3902291): Setting Boot Options for VM.
2024-06-21 17:07:18 (3902291): Setting Network Configuration for NAT.
2024-06-21 17:07:18 (3902291): Enabling VM Network Access.
2024-06-21 17:07:18 (3902291): Disabling USB Support for VM.
2024-06-21 17:07:18 (3902291): Disabling COM Port Support for VM.
2024-06-21 17:07:18 (3902291): Disabling LPT Port Support for VM.
2024-06-21 17:07:18 (3902291): Disabling Audio Support for VM.
2024-06-21 17:07:18 (3902291): Disabling Clipboard Support for VM.
2024-06-21 17:07:18 (3902291): Disabling Drag and Drop Support for VM.
2024-06-21 17:07:18 (3902291): Adding storage controller(s) to VM.
2024-06-21 17:07:18 (3902291): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-21 17:07:18 (3902291): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-21 17:07:18 (3902291): forwarding host port 39101 to guest port 80
2024-06-21 17:07:19 (3902291): Enabling remote desktop for VM.
2024-06-21 17:07:19 (3902291): Enabling shared directory for VM.
2024-06-21 17:07:19 (3902291): Starting VM using VBoxManage interface. (boinc_efd0ab059c49d0e6, slot#2)
2024-06-21 17:07:20 (3902291): Successfully started VM. (PID = '3902681')
2024-06-21 17:07:20 (3902291): Reporting VM Process ID to BOINC.
2024-06-21 17:07:20 (3902291): Guest Log: BIOS: VirtualBox 6.1.38
2024-06-21 17:07:20 (3902291): Guest Log: CPUID EDX: 0x178bfbff
2024-06-21 17:07:20 (3902291): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-21 17:07:20 (3902291): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-21 17:07:20 (3902291): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-21 17:07:20 (3902291): Detected: Web Application Enabled (http://localhost:39101)
2024-06-21 17:07:20 (3902291): Detected: Remote Desktop Enabled (localhost:41815)
2024-06-21 17:07:20 (3902291): Preference change detected
2024-06-21 17:07:20 (3902291): Setting CPU throttle for VM. (90%)
2024-06-21 17:07:20 (3902291): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 900 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-21 17:07:22 (3902291): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-21 17:07:22 (3902291): Guest Log: BIOS: Booting from Hard Disk...
2024-06-21 17:07:25 (3902291): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-21 17:07:25 (3902291): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-21 17:07:25 (3902291): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-21 17:07:25 (3902291): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-21 17:07:25 (3902291): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-21 17:07:25 (3902291): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-21 17:07:25 (3902291): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-21 17:07:25 (3902291): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-21 17:07:25 (3902291): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-21 17:07:25 (3902291): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-21 17:07:25 (3902291): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-21 17:07:25 (3902291): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-21 17:07:25 (3902291): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-21 17:07:25 (3902291): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-21 17:07:25 (3902291): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-21 17:07:25 (3902291): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-21 17:07:25 (3902291): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-21 17:07:25 (3902291): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-21 17:07:25 (3902291): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-21 17:07:25 (3902291): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-21 17:07:25 (3902291): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-21 17:07:25 (3902291): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-21 17:07:25 (3902291): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-21 17:07:25 (3902291): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-21 17:07:25 (3902291): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-21 17:07:25 (3902291): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-21 17:07:25 (3902291): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-21 17:07:25 (3902291): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-21 17:07:25 (3902291): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-21 17:07:25 (3902291): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-21 17:07:25 (3902291): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-21 17:07:25 (3902291): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-21 17:07:30 (3902291): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-21 17:07:30 (3902291): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-21 17:07:37 (3902291): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-21 17:07:37 (3902291): Guest Log: 00:00:00.000193 main     Log opened 2024-06-21T21:07:35.161213000Z
2024-06-21 17:07:37 (3902291): Guest Log: 00:00:00.000290 main     OS Product: Linux
2024-06-21 17:07:37 (3902291): Guest Log: 00:00:00.000322 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-21 17:07:37 (3902291): Guest Log: 00:00:00.000346 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-21 17:07:37 (3902291): Guest Log: 00:00:00.000368 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-21 17:07:37 (3902291): Guest Log: 00:00:00.000369 main     Process ID: 1275
2024-06-21 17:07:37 (3902291): Guest Log: 00:00:00.000369 main     Package type: LINUX_64BITS_GENERIC
2024-06-21 17:07:37 (3902291): Guest Log: 00:00:00.001539 main     5.2.32 r132073 started. Verbose level = 0
2024-06-21 17:07:37 (3902291): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-21 17:07:37 (3902291): Guest Log: [INFO] Mounting shared directory
2024-06-21 17:07:37 (3902291): Guest Log: [INFO] Checking for init_data.xml
2024-06-21 17:10:10 (3902291): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-21 17:10:10 (3902291): Guest Log: [INFO] Detected branch: prod
2024-06-21 17:10:10 (3902291): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-21 17:10:10 (3902291): Guest Log: Copying input files
2024-06-21 17:10:13 (3902291): Guest Log: Copied input files into RunAtlas.
2024-06-21 17:10:13 (3902291): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-06-21 17:10:13 (3902291): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-06-21 17:10:13 (3902291): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-06-21 17:10:13 (3902291): Guest Log: Further information can be found at the LHC@home message board.
2024-06-21 17:11:20 (3902291): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-21 17:11:20 (3902291): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-21 17:11:20 (3902291): Guest Log: 2.6.3.0 1605 2 32184 134142 4 1 3117206 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-06-21 17:11:21 (3902291): Guest Log: copied the webapp to /var/www
2024-06-21 17:11:21 (3902291): Guest Log: ATHENA_PROC_NUMBER=3
2024-06-21 17:11:21 (3902291): Guest Log: ATHENA_CORE_NUMBER=3
2024-06-21 17:11:22 (3902291): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-21 17:11:22 (3902291): Guest Log:  *** Starting ATLAS job. (PandaID=6238936250 taskID=40024023) ***
2024-06-21 18:46:20 (3902291): Status Report: Elapsed Time: '6000.000000'
2024-06-21 18:46:20 (3902291): Status Report: CPU Time: '13646.700000'
2024-06-21 20:25:21 (3902291): Status Report: Elapsed Time: '12000.000000'
2024-06-21 20:25:21 (3902291): Status Report: CPU Time: '30281.050000'
2024-06-21 22:04:21 (3902291): Status Report: Elapsed Time: '18000.000000'
2024-06-21 22:04:21 (3902291): Status Report: CPU Time: '46917.600000'
2024-06-21 23:34:58 (3902291): Guest Log:  *** Job finished ***
2024-06-21 23:34:58 (3902291): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-21 23:34:58 (3902291): Guest Log: 2024-06-22 03:34:49,154 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2024-06-21 23:34:58 (3902291): Guest Log: 2024-06-22 03:34:50,155 | INFO     | [job] queue monitor thread has finished
2024-06-21 23:34:58 (3902291): Guest Log: 2024-06-22 03:34:50,935 | INFO     | [data] queue_monitor thread has finished
2024-06-21 23:34:58 (3902291): Guest Log: 2024-06-22 03:34:52,104 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140399545575232)>', '<ExcThread(monitor, started 140398940886784)>']
2024-06-21 23:34:58 (3902291): Guest Log: 2024-06-22 03:34:52,916 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-21 23:34:58 (3902291): Guest Log: 2024-06-22 03:34:52,917 | INFO     | [monitor] control thread has ended
2024-06-21 23:34:58 (3902291): Guest Log: 2024-06-22 03:34:57,109 | INFO     | all workflow threads have been joined
2024-06-21 23:34:58 (3902291): Guest Log: 2024-06-22 03:34:57,109 | INFO     | end of generic workflow (traces error code: 0)
2024-06-21 23:34:58 (3902291): Guest Log: 2024-06-22 03:34:57,110 | INFO     | traces error code: 0
2024-06-21 23:34:58 (3902291): Guest Log: 2024-06-22 03:34:57,110 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-21 23:34:58 (3902291): Guest Log: 2024-06-22 03:34:57,189 [wrapper] ==== pilot stdout END ====
2024-06-21 23:34:58 (3902291): Guest Log: 2024-06-22 03:34:57,194 [wrapper] ==== wrapper stdout RESUME ====
2024-06-21 23:34:58 (3902291): Guest Log: 2024-06-22 03:34:57,201 [wrapper] pilotpid: 6465
2024-06-21 23:34:58 (3902291): Guest Log: 2024-06-22 03:34:57,208 [wrapper] Pilot exit status: 0
2024-06-21 23:34:58 (3902291): Guest Log: 2024-06-22 03:34:57,276 [wrapper] pandaids: 6238936250
2024-06-21 23:34:58 (3902291): Guest Log: 2024-06-22 03:34:57,315 [wrapper] cleanup supervisor_pilot 28828 6466
2024-06-21 23:34:58 (3902291): Guest Log: 2024-06-22 03:34:57,322 [wrapper] Test setup, not cleaning
2024-06-21 23:34:58 (3902291): Guest Log: 2024-06-22 03:34:57,328 [wrapper] ==== wrapper stdout END ====
2024-06-21 23:34:58 (3902291): Guest Log: 2024-06-22 03:34:57,334 [wrapper] ==== wrapper stderr END ====
2024-06-21 23:34:58 (3902291): Guest Log: 2024-06-22 03:34:57,347 [wrapper] apfmon messages muted
2024-06-21 23:34:58 (3902291): Guest Log:  *** Error codes and diagnostics ***
2024-06-21 23:34:58 (3902291): Guest Log:     "exeErrorCode": 0,
2024-06-21 23:34:58 (3902291): Guest Log:     "exeErrorDiag": "",
2024-06-21 23:34:58 (3902291): Guest Log:     "pilotErrorCode": 0,
2024-06-21 23:34:58 (3902291): Guest Log:     "pilotErrorDiag": "",
2024-06-21 23:34:58 (3902291): Guest Log:  *** Listing of results directory ***
2024-06-21 23:34:58 (3902291): Guest Log: total 258280
2024-06-21 23:34:58 (3902291): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 20 15:25 pilot3.tar.gz
2024-06-21 23:34:58 (3902291): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 20 15:29 queuedata.json
2024-06-21 23:34:58 (3902291): Guest Log: -rwx------. 1 atlas atlas     32308 Jun 20 15:31 runpilot2-wrapper.sh
2024-06-21 23:34:58 (3902291): Guest Log: -rw-r--r--. 1 atlas atlas     17537 Jun 21 21:10 start_atlas.sh
2024-06-21 23:34:58 (3902291): Guest Log: -rw-r--r--. 1 atlas atlas      8775 Jun 21 21:10 init_data.xml
2024-06-21 23:34:58 (3902291): Guest Log: -rw-r--r--. 1 atlas atlas    482484 Jun 21 21:10 input.tar.gz
2024-06-21 23:34:58 (3902291): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 21 21:10 EVNT.40024021._000001.pool.root.1 -> /data/./ATLAS.root_0
2024-06-21 23:34:58 (3902291): Guest Log: -rw-r--r--. 1 atlas atlas      2514 Jun 21 21:11 pandaJob.out
2024-06-21 23:34:58 (3902291): Guest Log: -rw-------. 1 atlas atlas       424 Jun 21 21:11 setup.sh.local
2024-06-21 23:34:58 (3902291): Guest Log: -rw-------. 1 atlas atlas   1025632 Jun 21 21:11 agis_schedconf.cvmfs.json
2024-06-21 23:34:58 (3902291): Guest Log: -rw-------. 1 atlas atlas   1321363 Jun 21 21:11 cric_ddmendpoints.json
2024-06-21 23:34:58 (3902291): Guest Log: drwx------. 4 atlas atlas      4096 Jun 21 21:11 pilot3
2024-06-21 23:34:58 (3902291): Guest Log: -rw-------. 1 atlas atlas 256866755 Jun 22 03:33 HITS.40024023._000956.pool.root.1
2024-06-21 23:34:58 (3902291): Guest Log: -rw-------. 1 atlas atlas        95 Jun 22 03:33 pilot_heartbeat.json
2024-06-21 23:34:58 (3902291): Guest Log: -rw-------. 1 atlas atlas      1048 Jun 22 03:34 memory_monitor_summary.json
2024-06-21 23:34:58 (3902291): Guest Log: -rw-------. 1 atlas atlas         0 Jun 22 03:34 agis_ddmendpoints.agis.ALL.json
2024-06-21 23:34:58 (3902291): Guest Log: -rw-------. 1 atlas atlas    358423 Jun 22 03:34 log.40024023._000956.job.log.tgz.1
2024-06-21 23:34:58 (3902291): Guest Log: -rw-------. 1 atlas atlas      7736 Jun 22 03:34 heartbeat.json
2024-06-21 23:34:58 (3902291): Guest Log: -rw-------. 1 atlas atlas      4580 Jun 22 03:34 pilotlog.txt
2024-06-21 23:34:58 (3902291): Guest Log: -rw-------. 1 atlas atlas   1714955 Jun 22 03:34 log.40024023._000956.job.log.1
2024-06-21 23:34:58 (3902291): Guest Log: -rw-------. 1 atlas atlas       357 Jun 22 03:34 output.list
2024-06-21 23:34:58 (3902291): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 22 03:34 runtime_log
2024-06-21 23:34:58 (3902291): Guest Log: -rw-------. 1 atlas atlas   2088960 Jun 22 03:34 result.tar.gz
2024-06-21 23:34:58 (3902291): Guest Log: -rw-------. 1 atlas atlas       643 Jun 22 03:34 tOAMDmmvYe5n9Rq4apOajLDm4fhM0noT9bVo2ijZDmKSXKDmZwXHIn.diag
2024-06-21 23:34:58 (3902291): Guest Log: -rw-r--r--. 1 atlas atlas     10913 Jun 22 03:34 runtime_log.err
2024-06-21 23:34:58 (3902291): Guest Log: Looking for outputfile HITS.40024023._000956.pool.root.1
2024-06-21 23:34:58 (3902291): Guest Log: HITS file was successfully produced
2024-06-21 23:34:58 (3902291): Guest Log: -rw-------. 1 atlas atlas 256866755 Jun 22 03:33 /home/atlas/RunAtlas/HITS.40024023._000956.pool.root.1
2024-06-21 23:34:58 (3902291): Guest Log: Successfully finished the ATLAS job!
2024-06-21 23:34:58 (3902291): Guest Log: Copying the results back to the shared directory!
2024-06-21 23:34:58 (3902291): Guest Log:  *** Contents of shared directory: ***
2024-06-21 23:34:58 (3902291): Guest Log: total 587300
2024-06-21 23:34:58 (3902291): Guest Log: -rw-r--r--. 1 root root 598785598 Jun 21 21:07 ATLAS.root_0
2024-06-21 23:34:58 (3902291): Guest Log: -rw-r--r--. 1 root root      8775 Jun 21 21:07 init_data.xml
2024-06-21 23:34:58 (3902291): Guest Log: -rw-r--r--. 1 root root    482484 Jun 21 21:07 input.tar.gz
2024-06-21 23:34:58 (3902291): Guest Log: -rw-r--r--. 1 root root   2088960 Jun 22 03:34 result.tar.gz
2024-06-21 23:34:58 (3902291): Guest Log: -rw-r--r--. 1 root root     17537 Jun 21 21:07 start_atlas.sh
2024-06-21 23:34:58 (3902291): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-21 23:34:58 (3902291): VM Completion File Detected.
2024-06-21 23:34:58 (3902291): Powering off VM.
2024-06-21 23:34:58 (3902291): Successfully stopped VM.
2024-06-21 23:34:58 (3902291): Deregistering VM. (boinc_efd0ab059c49d0e6, slot#2)
2024-06-21 23:34:58 (3902291): Removing network bandwidth throttle group from VM.
2024-06-21 23:34:58 (3902291): Removing VM from VirtualBox.
23:35:03 (3902291): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN