Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:52:15 (1647294): wrapper (7.7.26015): starting
10:52:15 (1647294): wrapper: running run_atlas (--nthreads 4)
[2024-06-21 10:52:15] Arguments: --nthreads 4
[2024-06-21 10:52:15] Threads: 4
[2024-06-21 10:52:15] Checking for CVMFS
[2024-06-21 10:52:15] No cvmfs_config command found, will try listing directly
[2024-06-21 10:52:15] CVMFS is ok
[2024-06-21 10:52:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-21 10:52:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-21 10:52:15] Further information can be found at the LHC@home message board.
[2024-06-21 10:52:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-21 10:52:15] Checking for apptainer binary...
[2024-06-21 10:52:15] which: no apptainer in ((null))
[2024-06-21 10:52:15] apptainer is not installed, using version from CVMFS
[2024-06-21 10:52:15] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-21 10:52:16] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot72/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2024-06-21 10:52:16] apptainer works
[2024-06-21 10:52:16] Set ATHENA_PROC_NUMBER=4
[2024-06-21 10:52:16] Set ATHENA_CORE_NUMBER=4
[2024-06-21 10:52:16] Starting ATLAS job with PandaID=6238873722
[2024-06-21 10:52:16] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot72/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-21 14:55:29]  *** The last 200 lines of the pilot log: ***
[2024-06-21 14:55:29] 2024-06-21 12:55:15,504 | INFO     | intersect: -44106935002.56202
[2024-06-21 14:55:29] 2024-06-21 12:55:15,504 | INFO     | chi2: 5.115977389350466
[2024-06-21 14:55:29] 2024-06-21 12:55:15,504 | INFO     | model: linear, x: [1718960033.0, 1718960094.0, 1718960155.0, 1718960216.0, 1718960277.0, 1718960338.0, 1718960399.0, 1718960460.0, 1718960521.0, 1718960582.0, 1718
[2024-06-21 14:55:29] 2024-06-21 12:55:15,504 | INFO     | sum of square deviations: 3922276332.0
[2024-06-21 14:55:29] 2024-06-21 12:55:15,506 | INFO     | sum of deviations: 119330929384.00002
[2024-06-21 14:55:29] 2024-06-21 12:55:15,506 | INFO     | mean x: 1718967109.0
[2024-06-21 14:55:29] 2024-06-21 12:55:15,506 | INFO     | mean y: 2293955.892703863
[2024-06-21 14:55:29] 2024-06-21 12:55:15,506 | INFO     | -- intersect: -52295383549.379425
[2024-06-21 14:55:29] 2024-06-21 12:55:15,506 | INFO     | intersect: -52295383549.379425
[2024-06-21 14:55:29] 2024-06-21 12:55:15,506 | INFO     | chi2: 4.371791885794203
[2024-06-21 14:55:29] 2024-06-21 12:55:15,507 | INFO     | current chi2=4.371791885794203 (change=14.546301653040446 %)
[2024-06-21 14:55:29] 2024-06-21 12:55:15,507 | INFO     | right removable region: 232
[2024-06-21 14:55:29] 2024-06-21 12:55:15,507 | INFO     | model: linear, x: [1718960338.0, 1718960399.0, 1718960460.0, 1718960521.0, 1718960582.0, 1718960643.0, 1718960704.0, 1718960765.0, 1718960826.0, 1718960887.0, 1718
[2024-06-21 14:55:29] 2024-06-21 12:55:15,510 | INFO     | sum of square deviations: 3922276332.0
[2024-06-21 14:55:29] 2024-06-21 12:55:15,512 | INFO     | sum of deviations: 51748375220.0
[2024-06-21 14:55:29] 2024-06-21 12:55:15,512 | INFO     | mean x: 1718967414.0
[2024-06-21 14:55:29] 2024-06-21 12:55:15,512 | INFO     | mean y: 2319709.802575107
[2024-06-21 14:55:29] 2024-06-21 12:55:15,512 | INFO     | -- intersect: -22676799047.051266
[2024-06-21 14:55:29] 2024-06-21 12:55:15,512 | INFO     | intersect: -22676799047.051266
[2024-06-21 14:55:29] 2024-06-21 12:55:15,512 | INFO     | chi2: 2.613389965698852
[2024-06-21 14:55:29] 2024-06-21 12:55:15,513 | INFO     | current chi2=2.613389965698852 (change=48.91709312205047 %)
[2024-06-21 14:55:29] 2024-06-21 12:55:15,513 | INFO     | model: linear, x: [1718960643.0, 1718960704.0, 1718960765.0, 1718960826.0, 1718960887.0, 1718960948.0, 1718961009.0, 1718961070.0, 1718961131.0, 1718961192.0, 1718
[2024-06-21 14:55:29] 2024-06-21 12:55:15,513 | INFO     | sum of square deviations: 3675146117.0
[2024-06-21 14:55:29] 2024-06-21 12:55:15,514 | INFO     | sum of deviations: 7908184082.0
[2024-06-21 14:55:29] 2024-06-21 12:55:15,514 | INFO     | mean x: 1718967566.5
[2024-06-21 14:55:29] 2024-06-21 12:55:15,514 | INFO     | mean y: 2346765.798245614
[2024-06-21 14:55:29] 2024-06-21 12:55:15,515 | INFO     | -- intersect: -3696529826.8870564
[2024-06-21 14:55:29] 2024-06-21 12:55:15,515 | INFO     | intersect: -3696529826.8870564
[2024-06-21 14:55:29] 2024-06-21 12:55:15,515 | INFO     | chi2: 1.1867578955050795
[2024-06-21 14:55:29] 2024-06-21 12:55:15,515 | INFO     | current chi2=1.1867578955050795 (change=54.5893299093721 %)
[2024-06-21 14:55:29] 2024-06-21 12:55:15,515 | INFO     | model: linear, x: [1718960948.0, 1718961009.0, 1718961070.0, 1718961131.0, 1718961192.0, 1718961253.0, 1718961314.0, 1718961375.0, 1718961436.0, 1718961497.0, 1718
[2024-06-21 14:55:29] 2024-06-21 12:55:15,515 | INFO     | sum of square deviations: 3438620752.0
[2024-06-21 14:55:29] 2024-06-21 12:55:15,517 | INFO     | sum of deviations: -9405059300.0
[2024-06-21 14:55:29] 2024-06-21 12:55:15,517 | INFO     | mean x: 1718967719.0
[2024-06-21 14:55:29] 2024-06-21 12:55:15,517 | INFO     | mean y: 2357806.278026906
[2024-06-21 14:55:29] 2024-06-21 12:55:15,517 | INFO     | -- intersect: 4703950246.379934
[2024-06-21 14:55:29] 2024-06-21 12:55:15,517 | INFO     | intersect: 4703950246.379934
[2024-06-21 14:55:29] 2024-06-21 12:55:15,517 | INFO     | chi2: 0.7783463712524097
[2024-06-21 14:55:29] 2024-06-21 12:55:15,517 | INFO     | current chi2=0.7783463712524097 (change=34.414055790111384 %)
[2024-06-21 14:55:29] 2024-06-21 12:55:15,517 | INFO     | model: linear, x: [1718961253.0, 1718961314.0, 1718961375.0, 1718961436.0, 1718961497.0, 1718961558.0, 1718961619.0, 1718961680.0, 1718961741.0, 1718961802.0, 1718
[2024-06-21 14:55:29] 2024-06-21 12:55:15,518 | INFO     | sum of square deviations: 3212467674.5
[2024-06-21 14:55:29] 2024-06-21 12:55:15,519 | INFO     | sum of deviations: -8515061095.499999
[2024-06-21 14:55:29] 2024-06-21 12:55:15,519 | INFO     | mean x: 1718967871.5
[2024-06-21 14:55:29] 2024-06-21 12:55:15,519 | INFO     | mean y: 2357203.7018348626
[2024-06-21 14:55:29] 2024-06-21 12:55:15,519 | INFO     | -- intersect: 4558703891.082047
[2024-06-21 14:55:29] 2024-06-21 12:55:15,519 | INFO     | intersect: 4558703891.082047
[2024-06-21 14:55:29] 2024-06-21 12:55:15,519 | INFO     | chi2: 0.777979142390163
[2024-06-21 14:55:29] 2024-06-21 12:55:15,519 | INFO     | current chi2=0.777979142390163 (change=0.047180648077772974 %)
[2024-06-21 14:55:29] 2024-06-21 12:55:15,520 | INFO     | left removable region: 40
[2024-06-21 14:55:29] 2024-06-21 12:55:15,520 | INFO     | model: linear, x: [1718962473.0, 1718962534.0, 1718962595.0, 1718962656.0, 1718962717.0, 1718962778.0, 1718962839.0, 1718962900.0, 1718962961.0, 1718963022.0, 1718
[2024-06-21 14:55:29] 2024-06-21 12:55:15,520 | INFO     | sum of square deviations: 2194675568.0
[2024-06-21 14:55:29] 2024-06-21 12:55:15,521 | INFO     | sum of deviations: 1851579756.5
[2024-06-21 14:55:29] 2024-06-21 12:55:15,521 | INFO     | mean x: 1718968298.5
[2024-06-21 14:55:29] 2024-06-21 12:55:15,521 | INFO     | mean y: 2368752.921875
[2024-06-21 14:55:29] 2024-06-21 12:55:15,521 | INFO     | -- intersect: -1447871524.035475
[2024-06-21 14:55:29] 2024-06-21 12:55:15,521 | INFO     | intersect: -1447871524.035475
[2024-06-21 14:55:29] 2024-06-21 12:55:15,521 | INFO     | chi2: 0.00017413133736751544
[2024-06-21 14:55:29] 2024-06-21 12:55:15,521 | INFO     | -- intersect: -1447871524.035475
[2024-06-21 14:55:29] 2024-06-21 12:55:15,522 | INFO     | current memory leak: 0.84 B/s (using 192 data points, chi2=0.00)
[2024-06-21 14:55:29] 2024-06-21 12:55:15,522 | INFO     | ..............................
[2024-06-21 14:55:29] 2024-06-21 12:55:15,522 | INFO     | . Timing measurements:
[2024-06-21 14:55:29] 2024-06-21 12:55:15,522 | INFO     | . get job = 0 s
[2024-06-21 14:55:29] 2024-06-21 12:55:15,522 | INFO     | . initial setup = 1 s
[2024-06-21 14:55:29] 2024-06-21 12:55:15,522 | INFO     | . payload setup = 14 s
[2024-06-21 14:55:29] 2024-06-21 12:55:15,522 | INFO     | . stage-in = 0 s
[2024-06-21 14:55:29] 2024-06-21 12:55:15,522 | INFO     | . payload execution = 14469 s
[2024-06-21 14:55:29] 2024-06-21 12:55:15,522 | INFO     | . stage-out = 1 s
[2024-06-21 14:55:29] 2024-06-21 12:55:15,522 | INFO     | . log creation = 0 s
[2024-06-21 14:55:29] 2024-06-21 12:55:15,522 | INFO     | ..............................
[2024-06-21 14:55:29] 2024-06-21 12:55:15,611 | INFO     | 
[2024-06-21 14:55:29] 2024-06-21 12:55:15,612 | INFO     | job summary report
[2024-06-21 14:55:29] 2024-06-21 12:55:15,612 | INFO     | --------------------------------------------------
[2024-06-21 14:55:29] 2024-06-21 12:55:15,612 | INFO     | PanDA job id: 6238873722
[2024-06-21 14:55:29] 2024-06-21 12:55:15,612 | INFO     | task id: 40024049
[2024-06-21 14:55:29] 2024-06-21 12:55:15,612 | INFO     | errors: (none)
[2024-06-21 14:55:29] 2024-06-21 12:55:15,612 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-21 14:55:29] 2024-06-21 12:55:15,612 | INFO     | pilot state: finished 
[2024-06-21 14:55:29] 2024-06-21 12:55:15,612 | INFO     | transexitcode: 0
[2024-06-21 14:55:29] 2024-06-21 12:55:15,612 | INFO     | exeerrorcode: 0
[2024-06-21 14:55:29] 2024-06-21 12:55:15,612 | INFO     | exeerrordiag: 
[2024-06-21 14:55:29] 2024-06-21 12:55:15,612 | INFO     | exitcode: 0
[2024-06-21 14:55:29] 2024-06-21 12:55:15,612 | INFO     | exitmsg: OK
[2024-06-21 14:55:29] 2024-06-21 12:55:15,613 | INFO     | cpuconsumptiontime: 54230 s
[2024-06-21 14:55:29] 2024-06-21 12:55:15,613 | INFO     | nevents: 400
[2024-06-21 14:55:29] 2024-06-21 12:55:15,613 | INFO     | neventsw: 0
[2024-06-21 14:55:29] 2024-06-21 12:55:15,613 | INFO     | pid: 1660432
[2024-06-21 14:55:29] 2024-06-21 12:55:15,613 | INFO     | pgrp: 1660432
[2024-06-21 14:55:29] 2024-06-21 12:55:15,613 | INFO     | corecount: 4
[2024-06-21 14:55:29] 2024-06-21 12:55:15,613 | INFO     | event service: False
[2024-06-21 14:55:29] 2024-06-21 12:55:15,613 | INFO     | sizes: {0: 2386869, 1: 2386869, 11: 2386897, 12: 2387131, 22: 2387159, 14488: 2417885, 14490: 2426867, 14491: 2426923, 14507: 2427093}
[2024-06-21 14:55:29] 2024-06-21 12:55:15,613 | INFO     | --------------------------------------------------
[2024-06-21 14:55:29] 2024-06-21 12:55:15,613 | INFO     | 
[2024-06-21 14:55:29] 2024-06-21 12:55:15,613 | INFO     | executing command: ls -lF /scratch/boinc/var/slot72/slots/1
[2024-06-21 14:55:29] 2024-06-21 12:55:15,641 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-21 14:55:29] 2024-06-21 12:55:15,642 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-21 14:55:29] 2024-06-21 12:55:15,642 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-21 14:55:29] 2024-06-21 12:55:15,642 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-21 14:55:29] 2024-06-21 12:55:15,642 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-21 14:55:29] 2024-06-21 12:55:15,642 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-21 14:55:29] 2024-06-21 12:55:15,642 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-21 14:55:29] 2024-06-21 12:55:15,642 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-21 14:55:29] 2024-06-21 12:55:15,642 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-21 14:55:29] 2024-06-21 12:55:15,642 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-21 14:55:29] 2024-06-21 12:55:15,643 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-21 14:55:29] 2024-06-21 12:55:15,643 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-21 14:55:29] 2024-06-21 12:55:15,643 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-21 14:55:29] 2024-06-21 12:55:15,643 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-21 14:55:29] 2024-06-21 12:55:15,643 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-21 14:55:29] 2024-06-21 12:55:15,643 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-21 14:55:29] 2024-06-21 12:55:15,643 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-21 14:55:29] 2024-06-21 12:55:15,643 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-21 14:55:29] 2024-06-21 12:55:15,643 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-21 14:55:29] 2024-06-21 12:55:15,643 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-21 14:55:29] 2024-06-21 12:55:15,643 | INFO     | job 6238873722 has completed (purged errors)
[2024-06-21 14:55:29] 2024-06-21 12:55:15,643 | INFO     | overall cleanup function is called
[2024-06-21 14:55:29] 2024-06-21 12:55:16,650 | INFO     | --- collectZombieJob: --- 10, [1660432]
[2024-06-21 14:55:29] 2024-06-21 12:55:16,651 | INFO     | zombie collector waiting for pid 1660432
[2024-06-21 14:55:29] 2024-06-21 12:55:16,651 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-21 14:55:29] 2024-06-21 12:55:17,655 | INFO     | collected zombie processes
[2024-06-21 14:55:29] 2024-06-21 12:55:17,656 | INFO     | will now attempt to kill all subprocesses of pid=1660432
[2024-06-21 14:55:29] 2024-06-21 12:55:17,968 | INFO     | process IDs to be killed: [1660432] (in reverse order)
[2024-06-21 14:55:29] 2024-06-21 12:55:18,188 | WARNING  | found no corresponding commands to process id(s)
[2024-06-21 14:55:29] 2024-06-21 12:55:18,188 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-21 14:55:29] 2024-06-21 12:55:18,207 | INFO     | did not find any defunct processes belonging to 1660432
[2024-06-21 14:55:29] 2024-06-21 12:55:18,217 | INFO     | did not find any defunct processes belonging to 1660432
[2024-06-21 14:55:29] 2024-06-21 12:55:18,217 | INFO     | ready for new job
[2024-06-21 14:55:29] 2024-06-21 12:55:18,218 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-21 14:55:29] 2024-06-21 12:55:18,220 | INFO     | *************************************
[2024-06-21 14:55:29] 2024-06-21 12:55:18,220 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-21 14:55:29] 2024-06-21 12:55:18,220 | INFO     | *************************************
[2024-06-21 14:55:29] 2024-06-21 12:55:18,220 | INFO     | 
[2024-06-21 14:55:29] 2024-06-21 12:55:18,227 | INFO     | architecture information:
[2024-06-21 14:55:29] 2024-06-21 12:55:18,227 | INFO     | executing command: cat /etc/os-release
[2024-06-21 14:55:29] 2024-06-21 12:55:18,249 | INFO     | cat /etc/os-release:
[2024-06-21 14:55:29] NAME="CentOS Linux"
[2024-06-21 14:55:29] VERSION="7 (Core)"
[2024-06-21 14:55:29] ID="centos"
[2024-06-21 14:55:29] ID_LIKE="rhel fedora"
[2024-06-21 14:55:29] VERSION_ID="7"
[2024-06-21 14:55:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-21 14:55:29] ANSI_COLOR="0;31"
[2024-06-21 14:55:29] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-21 14:55:29] HOME_URL="https://www.centos.org/"
[2024-06-21 14:55:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-21 14:55:29] 
[2024-06-21 14:55:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-21 14:55:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-21 14:55:29] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-21 14:55:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-21 14:55:29] 
[2024-06-21 14:55:29] 2024-06-21 12:55:18,249 | INFO     | *************************************
[2024-06-21 14:55:29] 2024-06-21 12:55:18,752 | INFO     | executing command: df -mP /scratch/boinc/var/slot72/slots/1
[2024-06-21 14:55:29] 2024-06-21 12:55:18,779 | INFO     | sufficient remaining disk space (3148542377984 B)
[2024-06-21 14:55:29] 2024-06-21 12:55:18,779 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-21 14:55:29] 2024-06-21 12:55:18,779 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-21 14:55:29] 2024-06-21 12:55:18,780 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-21 14:55:29] 2024-06-21 12:55:18,780 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-06-21 14:55:29] 2024-06-21 12:55:18,781 | INFO     | found 0 job(s) in 20 queues
[2024-06-21 14:55:29] 2024-06-21 12:55:18,781 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-21 14:55:29] 2024-06-21 12:55:18,781 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-21 14:55:29] 2024-06-21 12:55:19,005 | INFO     | all payload control threads have been joined
[2024-06-21 14:55:29] 2024-06-21 12:55:19,069 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-21 14:55:29] 2024-06-21 12:55:19,487 | INFO     | all data control threads have been joined
[2024-06-21 14:55:29] 2024-06-21 12:55:19,585 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-21 14:55:29] 2024-06-21 12:55:19,586 | INFO     | aborting loop
[2024-06-21 14:55:29] 2024-06-21 12:55:19,785 | INFO     | [job] retrieve thread has finished
[2024-06-21 14:55:29] 2024-06-21 12:55:19,827 | INFO     | all job control threads have been joined
[2024-06-21 14:55:29] 2024-06-21 12:55:19,855 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-21 14:55:29] 2024-06-21 12:55:20,011 | INFO     | [payload] control thread has finished
[2024-06-21 14:55:29] 2024-06-21 12:55:20,490 | INFO     | [data] copytool_in thread has finished
[2024-06-21 14:55:29] 2024-06-21 12:55:20,493 | INFO     | [data] control thread has finished
[2024-06-21 14:55:29] 2024-06-21 12:55:20,591 | INFO     | [job] job monitor thread has finished
[2024-06-21 14:55:29] 2024-06-21 12:55:20,620 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-21 14:55:29] 2024-06-21 12:55:20,765 | INFO     | [job] create_data_payload thread has finished
[2024-06-21 14:55:29] 2024-06-21 12:55:20,778 | INFO     | [payload] validate_pre thread has finished
[2024-06-21 14:55:29] 2024-06-21 12:55:20,834 | INFO     | [job] control thread has finished
[2024-06-21 14:55:29] 2024-06-21 12:55:20,901 | INFO     | [payload] failed_post thread has finished
[2024-06-21 14:55:29] 2024-06-21 12:55:20,968 | INFO     | [job] validate thread has finished
[2024-06-21 14:55:29] 2024-06-21 12:55:21,074 | INFO     | [data] copytool_out thread has finished
[2024-06-21 14:55:29] 2024-06-21 12:55:21,218 | INFO     | [payload] execute_payloads thread has finished
[2024-06-21 14:55:29] 2024-06-21 12:55:21,373 | INFO     | [payload] validate_post thread has finished
[2024-06-21 14:55:29] 2024-06-21 12:55:21,625 | INFO     | [job] queue monitor thread has finished
[2024-06-21 14:55:29] 2024-06-21 12:55:22,788 | INFO     | [data] queue_monitor thread has finished
[2024-06-21 14:55:29] 2024-06-21 12:55:22,825 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47645587813440)>', '<ExcThread(monitor, started 47645768087296)>']
[2024-06-21 14:55:29] 2024-06-21 12:55:23,808 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-21 14:55:29] 2024-06-21 12:55:23,809 | INFO     | [monitor] control thread has ended
[2024-06-21 14:55:29] 2024-06-21 12:55:27,849 | INFO     | all workflow threads have been joined
[2024-06-21 14:55:29] 2024-06-21 12:55:27,850 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-21 14:55:29] 2024-06-21 12:55:27,850 | INFO     | traces error code: 0
[2024-06-21 14:55:29] 2024-06-21 12:55:27,850 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-21 14:55:29] 2024-06-21 12:55:27,970 [wrapper] ==== pilot stdout END ====
[2024-06-21 14:55:29] 2024-06-21 12:55:27,974 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-21 14:55:29] 2024-06-21 12:55:27,976 [wrapper] pilotpid: 1652066
[2024-06-21 14:55:29] 2024-06-21 12:55:27,979 [wrapper] Pilot exit status: 0
[2024-06-21 14:55:29] 2024-06-21 12:55:28,046 [wrapper] pandaids: 6238873722
[2024-06-21 14:55:29] 2024-06-21 12:55:28,162 [wrapper] cleanup supervisor_pilot 2819596 1652067
[2024-06-21 14:55:29] 2024-06-21 12:55:28,165 [wrapper] Test setup, not cleaning
[2024-06-21 14:55:29] 2024-06-21 12:55:28,171 [wrapper] ==== wrapper stdout END ====
[2024-06-21 14:55:29] 2024-06-21 12:55:28,193 [wrapper] ==== wrapper stderr END ====
[2024-06-21 14:55:29] 2024-06-21 12:55:28,211 [wrapper] apfmon messages muted
[2024-06-21 14:55:29]  *** Error codes and diagnostics ***
[2024-06-21 14:55:29]     "exeErrorCode": 0,
[2024-06-21 14:55:29]     "exeErrorDiag": "",
[2024-06-21 14:55:29]     "pilotErrorCode": 0,
[2024-06-21 14:55:29]     "pilotErrorDiag": "",
[2024-06-21 14:55:29]  *** Listing of results directory ***
[2024-06-21 14:55:29] total 872940
[2024-06-21 14:55:29] -rw-r--r-- 1 boinc boinc    469766 Jun 20 16:57 pilot3.tar.gz
[2024-06-21 14:55:29] -rw-r--r-- 1 boinc boinc      5654 Jun 20 17:00 queuedata.json
[2024-06-21 14:55:29] -rwx------ 1 boinc boinc     32308 Jun 20 17:01 runpilot2-wrapper.sh
[2024-06-21 14:55:29] -rw-r--r-- 1 boinc boinc       100 Jun 21 10:52 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-21 14:55:29] -rwxr-xr-x 1 boinc boinc      7986 Jun 21 10:52 run_atlas
[2024-06-21 14:55:29] -rw-r--r-- 1 boinc boinc       105 Jun 21 10:52 job.xml
[2024-06-21 14:55:29] -rw-r--r-- 2 boinc boinc 612613282 Jun 21 10:52 EVNT.40024047._000027.pool.root.1
[2024-06-21 14:55:29] -rw-r--r-- 2 boinc boinc     17537 Jun 21 10:52 start_atlas.sh
[2024-06-21 14:55:29] drwxrwx--x 2 boinc boinc      4096 Jun 21 10:52 shared
[2024-06-21 14:55:29] -rw-r--r-- 2 boinc boinc    482473 Jun 21 10:52 input.tar.gz
[2024-06-21 14:55:29] -rw-r--r-- 1 boinc boinc      6642 Jun 21 10:52 init_data.xml
[2024-06-21 14:55:29] -rw-r--r-- 1 boinc boinc         0 Jun 21 10:52 boinc_lockfile
[2024-06-21 14:55:29] -rw-r--r-- 1 boinc boinc      2503 Jun 21 10:52 pandaJob.out
[2024-06-21 14:55:29] -rw------- 1 boinc boinc       424 Jun 21 10:52 setup.sh.local
[2024-06-21 14:55:29] -rw------- 1 boinc boinc   1023459 Jun 21 10:52 agis_schedconf.cvmfs.json
[2024-06-21 14:55:29] -rw------- 1 boinc boinc   1321251 Jun 21 10:52 cric_ddmendpoints.json
[2024-06-21 14:55:29] drwx------ 4 boinc boinc      4096 Jun 21 10:52 pilot3
[2024-06-21 14:55:29] -rw------- 1 boinc boinc 274101063 Jun 21 14:54 HITS.40024049._000421.pool.root.1
[2024-06-21 14:55:29] -rw-r--r-- 1 boinc boinc       532 Jun 21 14:54 boinc_task_state.xml
[2024-06-21 14:55:29] -rw------- 1 boinc boinc        95 Jun 21 14:54 pilot_heartbeat.json
[2024-06-21 14:55:29] -rw------- 1 boinc boinc      1042 Jun 21 14:54 memory_monitor_summary.json
[2024-06-21 14:55:29] -rw------- 1 boinc boinc         0 Jun 21 14:54 agis_ddmendpoints.agis.ALL.json
[2024-06-21 14:55:29] -rw------- 1 boinc boinc    353592 Jun 21 14:54 log.40024049._000421.job.log.tgz.1
[2024-06-21 14:55:29] -rw-r--r-- 1 boinc boinc      8192 Jun 21 14:55 boinc_mmap_file
[2024-06-21 14:55:29] -rw-r--r-- 1 boinc boinc        28 Jun 21 14:55 wrapper_checkpoint.txt
[2024-06-21 14:55:29] -rw------- 1 boinc boinc      7709 Jun 21 14:55 heartbeat.json
[2024-06-21 14:55:29] -rw------- 1 boinc boinc      4345 Jun 21 14:55 pilotlog.txt
[2024-06-21 14:55:29] -rw------- 1 boinc boinc   1465527 Jun 21 14:55 log.40024049._000421.job.log.1
[2024-06-21 14:55:29] -rw------- 1 boinc boinc       357 Jun 21 14:55 output.list
[2024-06-21 14:55:29] -rw-r--r-- 1 boinc boinc       620 Jun 21 14:55 runtime_log
[2024-06-21 14:55:29] -rw------- 1 boinc boinc   1843200 Jun 21 14:55 result.tar.gz
[2024-06-21 14:55:29] -rw-r--r-- 1 boinc boinc     11410 Jun 21 14:55 runtime_log.err
[2024-06-21 14:55:29] -rw------- 1 boinc boinc       658 Jun 21 14:55 PWrMDmnSYe5n7Olcko1bjSoqABFKDmABFKDmOtvXDm1nqKDmAlecXo.diag
[2024-06-21 14:55:29] -rw-r--r-- 1 boinc boinc     21342 Jun 21 14:55 stderr.txt
[2024-06-21 14:55:29] HITS file was successfully produced:
[2024-06-21 14:55:29] -rw------- 1 boinc boinc 274101063 Jun 21 14:54 shared/HITS.pool.root.1
[2024-06-21 14:55:29]  *** Contents of shared directory: ***
[2024-06-21 14:55:29] total 868236
[2024-06-21 14:55:29] -rw-r--r-- 2 boinc boinc 612613282 Jun 21 10:52 ATLAS.root_0
[2024-06-21 14:55:29] -rw-r--r-- 2 boinc boinc     17537 Jun 21 10:52 start_atlas.sh
[2024-06-21 14:55:29] -rw-r--r-- 2 boinc boinc    482473 Jun 21 10:52 input.tar.gz
[2024-06-21 14:55:29] -rw------- 1 boinc boinc 274101063 Jun 21 14:54 HITS.pool.root.1
[2024-06-21 14:55:29] -rw------- 1 boinc boinc   1843200 Jun 21 14:55 result.tar.gz
14:55:30 (1647294): run_atlas exited; CPU time 53909.883564
14:55:30 (1647294): called boinc_finish(0)

</stderr_txt>
]]>

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