Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:06:18 (3945063): wrapper (7.7.26015): starting
04:06:18 (3945063): wrapper: running run_atlas (--nthreads 4)
[2024-06-21 04:06:18] Arguments: --nthreads 4
[2024-06-21 04:06:18] Threads: 4
[2024-06-21 04:06:18] Checking for CVMFS
[2024-06-21 04:06:18] No cvmfs_config command found, will try listing directly
[2024-06-21 04:06:18] CVMFS is ok
[2024-06-21 04:06:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-21 04:06:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-21 04:06:18] Further information can be found at the LHC@home message board.
[2024-06-21 04:06:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-21 04:06:18] Checking for apptainer binary...
[2024-06-21 04:06:18] which: no apptainer in ((null))
[2024-06-21 04:06:18] apptainer is not installed, using version from CVMFS
[2024-06-21 04:06:18] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-21 04:06:19] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot64/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut16.grid.cesnet.cz
[2024-06-21 04:06:19] apptainer works
[2024-06-21 04:06:19] Set ATHENA_PROC_NUMBER=4
[2024-06-21 04:06:19] Set ATHENA_CORE_NUMBER=4
[2024-06-21 04:06:19] Starting ATLAS job with PandaID=6238873545
[2024-06-21 04:06:19] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot64/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-21 07:43:08]  *** The last 200 lines of the pilot log: ***
[2024-06-21 07:43:08] 2024-06-21 05:42:53,948 | INFO     | -- intersect: -53073543112.185646
[2024-06-21 07:43:08] 2024-06-21 05:42:53,949 | INFO     | intersect: -53073543112.185646
[2024-06-21 07:43:08] 2024-06-21 05:42:53,949 | INFO     | chi2: 5.143120086464272
[2024-06-21 07:43:08] 2024-06-21 05:42:53,949 | INFO     | model: linear, x: [1718935627.0, 1718935688.0, 1718935749.0, 1718935810.0, 1718935871.0, 1718935932.0, 1718935993.0, 1718936054.0, 1718936115.0, 1718936176.0, 1718
[2024-06-21 07:43:08] 2024-06-21 05:42:53,949 | INFO     | sum of square deviations: 2790348132.0
[2024-06-21 07:43:08] 2024-06-21 05:42:53,950 | INFO     | sum of deviations: 103765714537.5
[2024-06-21 07:43:08] 2024-06-21 05:42:53,950 | INFO     | mean x: 1718941940.5
[2024-06-21 07:43:08] 2024-06-21 05:42:53,950 | INFO     | mean y: 2291138.8798076925
[2024-06-21 07:43:08] 2024-06-21 05:42:53,951 | INFO     | -- intersect: -63920642583.5921
[2024-06-21 07:43:08] 2024-06-21 05:42:53,951 | INFO     | intersect: -63920642583.5921
[2024-06-21 07:43:08] 2024-06-21 05:42:53,951 | INFO     | chi2: 4.339472314523987
[2024-06-21 07:43:08] 2024-06-21 05:42:53,951 | INFO     | current chi2=4.339472314523987 (change=15.625685545537527 %)
[2024-06-21 07:43:08] 2024-06-21 05:42:53,951 | INFO     | right removable region: 207
[2024-06-21 07:43:08] 2024-06-21 05:42:53,951 | INFO     | model: linear, x: [1718935932.0, 1718935993.0, 1718936054.0, 1718936115.0, 1718936176.0, 1718936237.0, 1718936298.0, 1718936359.0, 1718936420.0, 1718936481.0, 1718
[2024-06-21 07:43:08] 2024-06-21 05:42:53,951 | INFO     | sum of square deviations: 2790348132.0
[2024-06-21 07:43:08] 2024-06-21 05:42:53,953 | INFO     | sum of deviations: 44351555175.0
[2024-06-21 07:43:08] 2024-06-21 05:42:53,953 | INFO     | mean x: 1718942245.5
[2024-06-21 07:43:08] 2024-06-21 05:42:53,953 | INFO     | mean y: 2318564.8846153845
[2024-06-21 07:43:08] 2024-06-21 05:42:53,953 | INFO     | -- intersect: -27319634910.966347
[2024-06-21 07:43:08] 2024-06-21 05:42:53,953 | INFO     | intersect: -27319634910.966347
[2024-06-21 07:43:08] 2024-06-21 05:42:53,953 | INFO     | chi2: 2.7583766019513756
[2024-06-21 07:43:08] 2024-06-21 05:42:53,953 | INFO     | current chi2=2.7583766019513756 (change=46.367641517628456 %)
[2024-06-21 07:43:08] 2024-06-21 05:42:53,953 | INFO     | model: linear, x: [1718936237.0, 1718936298.0, 1718936359.0, 1718936420.0, 1718936481.0, 1718936542.0, 1718936603.0, 1718936664.0, 1718936725.0, 1718936786.0, 1718
[2024-06-21 07:43:08] 2024-06-21 05:42:53,954 | INFO     | sum of square deviations: 2593916542.0
[2024-06-21 07:43:08] 2024-06-21 05:42:53,955 | INFO     | sum of deviations: 3295041270.0
[2024-06-21 07:43:08] 2024-06-21 05:42:53,955 | INFO     | mean x: 1718942398.0
[2024-06-21 07:43:08] 2024-06-21 05:42:53,955 | INFO     | mean y: 2350447.699507389
[2024-06-21 07:43:08] 2024-06-21 05:42:53,955 | INFO     | -- intersect: -2181214848.428191
[2024-06-21 07:43:08] 2024-06-21 05:42:53,955 | INFO     | intersect: -2181214848.428191
[2024-06-21 07:43:08] 2024-06-21 05:42:53,955 | INFO     | chi2: 1.1776834424023797
[2024-06-21 07:43:08] 2024-06-21 05:42:53,955 | INFO     | current chi2=1.1776834424023797 (change=57.30519750025274 %)
[2024-06-21 07:43:08] 2024-06-21 05:42:53,955 | INFO     | model: linear, x: [1718936542.0, 1718936603.0, 1718936664.0, 1718936725.0, 1718936786.0, 1718936847.0, 1718936908.0, 1718936969.0, 1718937030.0, 1718937091.0, 1718
[2024-06-21 07:43:08] 2024-06-21 05:42:53,956 | INFO     | sum of square deviations: 2406926989.5
[2024-06-21 07:43:08] 2024-06-21 05:42:53,957 | INFO     | sum of deviations: -9209552256.5
[2024-06-21 07:43:08] 2024-06-21 05:42:53,957 | INFO     | mean x: 1718942550.5
[2024-06-21 07:43:08] 2024-06-21 05:42:53,957 | INFO     | mean y: 2360506.0353535353
[2024-06-21 07:43:08] 2024-06-21 05:42:53,957 | INFO     | -- intersect: 6579498621.903052
[2024-06-21 07:43:08] 2024-06-21 05:42:53,957 | INFO     | intersect: 6579498621.903052
[2024-06-21 07:43:08] 2024-06-21 05:42:53,957 | INFO     | chi2: 0.8428349529215063
[2024-06-21 07:43:08] 2024-06-21 05:42:53,957 | INFO     | current chi2=0.8428349529215063 (change=28.432809482131233 %)
[2024-06-21 07:43:08] 2024-06-21 05:42:53,957 | INFO     | model: linear, x: [1718936847.0, 1718936908.0, 1718936969.0, 1718937030.0, 1718937091.0, 1718937152.0, 1718937213.0, 1718937274.0, 1718937335.0, 1718937396.0, 1718
[2024-06-21 07:43:08] 2024-06-21 05:42:53,958 | INFO     | sum of square deviations: 2229146912.0
[2024-06-21 07:43:08] 2024-06-21 05:42:53,958 | INFO     | sum of deviations: -10033452264.0
[2024-06-21 07:43:08] 2024-06-21 05:42:53,958 | INFO     | mean x: 1718942703.0
[2024-06-21 07:43:08] 2024-06-21 05:42:53,958 | INFO     | mean y: 2361210.564766839
[2024-06-21 07:43:08] 2024-06-21 05:42:53,958 | INFO     | -- intersect: 7739370136.381868
[2024-06-21 07:43:08] 2024-06-21 05:42:53,958 | INFO     | intersect: 7739370136.381868
[2024-06-21 07:43:08] 2024-06-21 05:42:53,959 | INFO     | chi2: 0.8422146913563374
[2024-06-21 07:43:08] 2024-06-21 05:42:53,959 | INFO     | current chi2=0.8422146913563374 (change=0.07359229265693348 %)
[2024-06-21 07:43:08] 2024-06-21 05:42:53,959 | INFO     | left removable region: 40
[2024-06-21 07:43:08] 2024-06-21 05:42:53,959 | INFO     | model: linear, x: [1718938067.0, 1718938128.0, 1718938189.0, 1718938250.0, 1718938311.0, 1718938372.0, 1718938433.0, 1718938494.0, 1718938555.0, 1718938616.0, 1718
[2024-06-21 07:43:08] 2024-06-21 05:42:53,959 | INFO     | sum of square deviations: 1444149868.0
[2024-06-21 07:43:08] 2024-06-21 05:42:53,959 | INFO     | sum of deviations: 824048390.0000004
[2024-06-21 07:43:08] 2024-06-21 05:42:53,959 | INFO     | mean x: 1718943130.0
[2024-06-21 07:43:08] 2024-06-21 05:42:53,959 | INFO     | mean y: 2373930.1017964073
[2024-06-21 07:43:08] 2024-06-21 05:42:53,959 | INFO     | -- intersect: -978474630.1239913
[2024-06-21 07:43:08] 2024-06-21 05:42:53,959 | INFO     | intersect: -978474630.1239913
[2024-06-21 07:43:08] 2024-06-21 05:42:53,960 | INFO     | chi2: 0.00014045266573244855
[2024-06-21 07:43:08] 2024-06-21 05:42:53,960 | INFO     | -- intersect: -978474630.1239913
[2024-06-21 07:43:08] 2024-06-21 05:42:53,960 | INFO     | current memory leak: 0.57 B/s (using 167 data points, chi2=0.00)
[2024-06-21 07:43:08] 2024-06-21 05:42:53,960 | INFO     | ..............................
[2024-06-21 07:43:08] 2024-06-21 05:42:53,960 | INFO     | . Timing measurements:
[2024-06-21 07:43:08] 2024-06-21 05:42:53,960 | INFO     | . get job = 0 s
[2024-06-21 07:43:08] 2024-06-21 05:42:53,960 | INFO     | . initial setup = 1 s
[2024-06-21 07:43:08] 2024-06-21 05:42:53,960 | INFO     | . payload setup = 8 s
[2024-06-21 07:43:08] 2024-06-21 05:42:53,960 | INFO     | . stage-in = 0 s
[2024-06-21 07:43:08] 2024-06-21 05:42:53,960 | INFO     | . payload execution = 12940 s
[2024-06-21 07:43:08] 2024-06-21 05:42:53,960 | INFO     | . stage-out = 0 s
[2024-06-21 07:43:08] 2024-06-21 05:42:53,960 | INFO     | . log creation = 0 s
[2024-06-21 07:43:08] 2024-06-21 05:42:53,960 | INFO     | ..............................
[2024-06-21 07:43:08] 2024-06-21 05:42:54,016 | INFO     | 
[2024-06-21 07:43:08] 2024-06-21 05:42:54,016 | INFO     | job summary report
[2024-06-21 07:43:08] 2024-06-21 05:42:54,016 | INFO     | --------------------------------------------------
[2024-06-21 07:43:08] 2024-06-21 05:42:54,016 | INFO     | PanDA job id: 6238873545
[2024-06-21 07:43:08] 2024-06-21 05:42:54,017 | INFO     | task id: 40024049
[2024-06-21 07:43:08] 2024-06-21 05:42:54,017 | INFO     | errors: (none)
[2024-06-21 07:43:08] 2024-06-21 05:42:54,017 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-21 07:43:08] 2024-06-21 05:42:54,017 | INFO     | pilot state: finished 
[2024-06-21 07:43:08] 2024-06-21 05:42:54,017 | INFO     | transexitcode: 0
[2024-06-21 07:43:08] 2024-06-21 05:42:54,017 | INFO     | exeerrorcode: 0
[2024-06-21 07:43:08] 2024-06-21 05:42:54,017 | INFO     | exeerrordiag: 
[2024-06-21 07:43:08] 2024-06-21 05:42:54,017 | INFO     | exitcode: 0
[2024-06-21 07:43:08] 2024-06-21 05:42:54,017 | INFO     | exitmsg: OK
[2024-06-21 07:43:08] 2024-06-21 05:42:54,017 | INFO     | cpuconsumptiontime: 48462 s
[2024-06-21 07:43:08] 2024-06-21 05:42:54,017 | INFO     | nevents: 400
[2024-06-21 07:43:08] 2024-06-21 05:42:54,017 | INFO     | neventsw: 0
[2024-06-21 07:43:08] 2024-06-21 05:42:54,017 | INFO     | pid: 3960254
[2024-06-21 07:43:08] 2024-06-21 05:42:54,018 | INFO     | pgrp: 3960254
[2024-06-21 07:43:08] 2024-06-21 05:42:54,018 | INFO     | corecount: 4
[2024-06-21 07:43:08] 2024-06-21 05:42:54,018 | INFO     | event service: False
[2024-06-21 07:43:08] 2024-06-21 05:42:54,018 | INFO     | sizes: {0: 2386858, 8: 2387064, 10: 2387092, 12953: 2416985, 12955: 2426023, 12963: 2426137}
[2024-06-21 07:43:08] 2024-06-21 05:42:54,018 | INFO     | --------------------------------------------------
[2024-06-21 07:43:08] 2024-06-21 05:42:54,018 | INFO     | 
[2024-06-21 07:43:08] 2024-06-21 05:42:54,018 | INFO     | executing command: ls -lF /scratch/boinc/var/slot64/slots/1
[2024-06-21 07:43:08] 2024-06-21 05:42:54,038 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-21 07:43:08] 2024-06-21 05:42:54,038 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-21 07:43:08] 2024-06-21 05:42:54,038 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-21 07:43:08] 2024-06-21 05:42:54,038 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-21 07:43:08] 2024-06-21 05:42:54,038 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-21 07:43:08] 2024-06-21 05:42:54,038 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-21 07:43:08] 2024-06-21 05:42:54,039 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-21 07:43:08] 2024-06-21 05:42:54,039 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-21 07:43:08] 2024-06-21 05:42:54,039 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-21 07:43:08] 2024-06-21 05:42:54,039 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-21 07:43:08] 2024-06-21 05:42:54,039 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-21 07:43:08] 2024-06-21 05:42:54,039 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-21 07:43:08] 2024-06-21 05:42:54,039 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-21 07:43:08] 2024-06-21 05:42:54,039 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-21 07:43:08] 2024-06-21 05:42:54,039 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-21 07:43:08] 2024-06-21 05:42:54,039 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-21 07:43:08] 2024-06-21 05:42:54,039 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-21 07:43:08] 2024-06-21 05:42:54,039 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-21 07:43:08] 2024-06-21 05:42:54,039 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-21 07:43:08] 2024-06-21 05:42:54,039 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-21 07:43:08] 2024-06-21 05:42:54,039 | INFO     | job 6238873545 has completed (purged errors)
[2024-06-21 07:43:08] 2024-06-21 05:42:54,039 | INFO     | overall cleanup function is called
[2024-06-21 07:43:08] 2024-06-21 05:42:55,046 | INFO     | --- collectZombieJob: --- 10, [3960254]
[2024-06-21 07:43:08] 2024-06-21 05:42:55,046 | INFO     | zombie collector waiting for pid 3960254
[2024-06-21 07:43:08] 2024-06-21 05:42:55,046 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-21 07:43:08] 2024-06-21 05:42:56,051 | INFO     | collected zombie processes
[2024-06-21 07:43:08] 2024-06-21 05:42:56,051 | INFO     | will now attempt to kill all subprocesses of pid=3960254
[2024-06-21 07:43:08] 2024-06-21 05:42:56,236 | INFO     | process IDs to be killed: [3960254] (in reverse order)
[2024-06-21 07:43:08] 2024-06-21 05:42:56,402 | WARNING  | found no corresponding commands to process id(s)
[2024-06-21 07:43:08] 2024-06-21 05:42:56,402 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-21 07:43:08] 2024-06-21 05:42:56,419 | INFO     | did not find any defunct processes belonging to 3960254
[2024-06-21 07:43:08] 2024-06-21 05:42:56,428 | INFO     | did not find any defunct processes belonging to 3960254
[2024-06-21 07:43:08] 2024-06-21 05:42:56,428 | INFO     | ready for new job
[2024-06-21 07:43:08] 2024-06-21 05:42:56,428 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-21 07:43:08] 2024-06-21 05:42:56,430 | INFO     | *************************************
[2024-06-21 07:43:08] 2024-06-21 05:42:56,430 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-21 07:43:08] 2024-06-21 05:42:56,430 | INFO     | *************************************
[2024-06-21 07:43:08] 2024-06-21 05:42:56,430 | INFO     | 
[2024-06-21 07:43:08] 2024-06-21 05:42:56,434 | INFO     | architecture information:
[2024-06-21 07:43:08] 2024-06-21 05:42:56,435 | INFO     | executing command: cat /etc/os-release
[2024-06-21 07:43:08] 2024-06-21 05:42:56,454 | INFO     | cat /etc/os-release:
[2024-06-21 07:43:08] NAME="CentOS Linux"
[2024-06-21 07:43:08] VERSION="7 (Core)"
[2024-06-21 07:43:08] ID="centos"
[2024-06-21 07:43:08] ID_LIKE="rhel fedora"
[2024-06-21 07:43:08] VERSION_ID="7"
[2024-06-21 07:43:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-21 07:43:08] ANSI_COLOR="0;31"
[2024-06-21 07:43:08] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-21 07:43:08] HOME_URL="https://www.centos.org/"
[2024-06-21 07:43:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-21 07:43:08] 
[2024-06-21 07:43:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-21 07:43:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-21 07:43:08] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-21 07:43:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-21 07:43:08] 
[2024-06-21 07:43:08] 2024-06-21 05:42:56,454 | INFO     | *************************************
[2024-06-21 07:43:08] 2024-06-21 05:42:56,956 | INFO     | executing command: df -mP /scratch/boinc/var/slot64/slots/1
[2024-06-21 07:43:08] 2024-06-21 05:42:56,976 | INFO     | sufficient remaining disk space (3165996974080 B)
[2024-06-21 07:43:08] 2024-06-21 05:42:56,976 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-21 07:43:08] 2024-06-21 05:42:56,976 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-21 07:43:08] 2024-06-21 05:42:56,977 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-21 07:43:08] 2024-06-21 05:42:56,977 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-21 07:43:08] 2024-06-21 05:42:56,978 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-21 07:43:08] 2024-06-21 05:42:56,978 | INFO     | aborting loop
[2024-06-21 07:43:08] 2024-06-21 05:42:57,467 | INFO     | all data control threads have been joined
[2024-06-21 07:43:08] 2024-06-21 05:42:57,525 | INFO     | all payload control threads have been joined
[2024-06-21 07:43:08] 2024-06-21 05:42:57,570 | INFO     | found 0 job(s) in 20 queues
[2024-06-21 07:43:08] 2024-06-21 05:42:57,570 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-21 07:43:08] 2024-06-21 05:42:57,570 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-21 07:43:08] 2024-06-21 05:42:57,979 | INFO     | [job] retrieve thread has finished
[2024-06-21 07:43:08] 2024-06-21 05:42:57,983 | INFO     | [job] job monitor thread has finished
[2024-06-21 07:43:08] 2024-06-21 05:42:58,196 | INFO     | [job] create_data_payload thread has finished
[2024-06-21 07:43:08] 2024-06-21 05:42:58,315 | INFO     | all job control threads have been joined
[2024-06-21 07:43:08] 2024-06-21 05:42:58,424 | INFO     | [job] validate thread has finished
[2024-06-21 07:43:08] 2024-06-21 05:42:58,455 | INFO     | [payload] execute_payloads thread has finished
[2024-06-21 07:43:08] 2024-06-21 05:42:58,472 | INFO     | [data] control thread has finished
[2024-06-21 07:43:08] 2024-06-21 05:42:58,511 | INFO     | [data] copytool_in thread has finished
[2024-06-21 07:43:08] 2024-06-21 05:42:58,530 | INFO     | [payload] control thread has finished
[2024-06-21 07:43:08] 2024-06-21 05:42:58,624 | INFO     | [payload] failed_post thread has finished
[2024-06-21 07:43:08] 2024-06-21 05:42:58,701 | INFO     | [payload] validate_pre thread has finished
[2024-06-21 07:43:08] 2024-06-21 05:42:58,983 | INFO     | [data] copytool_out thread has finished
[2024-06-21 07:43:08] 2024-06-21 05:42:59,026 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-21 07:43:08] 2024-06-21 05:42:59,320 | INFO     | [job] control thread has finished
[2024-06-21 07:43:08] 2024-06-21 05:42:59,365 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-21 07:43:08] 2024-06-21 05:42:59,476 | INFO     | [payload] validate_post thread has finished
[2024-06-21 07:43:08] 2024-06-21 05:43:00,031 | INFO     | [job] queue monitor thread has finished
[2024-06-21 07:43:08] 2024-06-21 05:43:00,984 | INFO     | [data] queue_monitor thread has finished
[2024-06-21 07:43:08] 2024-06-21 05:43:02,920 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47921655219264)>', '<ExcThread(monitor, started 47921835493120)>']
[2024-06-21 07:43:08] 2024-06-21 05:43:03,595 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-21 07:43:08] 2024-06-21 05:43:03,595 | INFO     | [monitor] control thread has ended
[2024-06-21 07:43:08] 2024-06-21 05:43:07,945 | INFO     | all workflow threads have been joined
[2024-06-21 07:43:08] 2024-06-21 05:43:07,945 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-21 07:43:08] 2024-06-21 05:43:07,945 | INFO     | traces error code: 0
[2024-06-21 07:43:08] 2024-06-21 05:43:07,946 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-21 07:43:08] 2024-06-21 05:43:08,045 [wrapper] ==== pilot stdout END ====
[2024-06-21 07:43:08] 2024-06-21 05:43:08,048 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-21 07:43:08] 2024-06-21 05:43:08,050 [wrapper] pilotpid: 3950346
[2024-06-21 07:43:08] 2024-06-21 05:43:08,052 [wrapper] Pilot exit status: 0
[2024-06-21 07:43:08] 2024-06-21 05:43:08,058 [wrapper] pandaids: 6238873545
[2024-06-21 07:43:08] 2024-06-21 05:43:08,149 [wrapper] cleanup supervisor_pilot  785104 3950347
[2024-06-21 07:43:08] 2024-06-21 05:43:08,152 [wrapper] Test setup, not cleaning
[2024-06-21 07:43:08] 2024-06-21 05:43:08,155 [wrapper] ==== wrapper stdout END ====
[2024-06-21 07:43:08] 2024-06-21 05:43:08,159 [wrapper] ==== wrapper stderr END ====
[2024-06-21 07:43:08] 2024-06-21 05:43:08,170 [wrapper] apfmon messages muted
[2024-06-21 07:43:08]  *** Error codes and diagnostics ***
[2024-06-21 07:43:08]     "exeErrorCode": 0,
[2024-06-21 07:43:08]     "exeErrorDiag": "",
[2024-06-21 07:43:08]     "pilotErrorCode": 0,
[2024-06-21 07:43:08]     "pilotErrorDiag": "",
[2024-06-21 07:43:08]  *** Listing of results directory ***
[2024-06-21 07:43:08] total 875988
[2024-06-21 07:43:08] -rw-r--r-- 1 boinc boinc    469766 Jun 20 16:14 pilot3.tar.gz
[2024-06-21 07:43:08] -rw-r--r-- 1 boinc boinc      5654 Jun 20 16:25 queuedata.json
[2024-06-21 07:43:08] -rwx------ 1 boinc boinc     32308 Jun 20 16:27 runpilot2-wrapper.sh
[2024-06-21 07:43:08] -rw-r--r-- 1 boinc boinc       100 Jun 21 04:06 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-21 07:43:08] -rwxr-xr-x 1 boinc boinc      7986 Jun 21 04:06 run_atlas
[2024-06-21 07:43:08] -rw-r--r-- 1 boinc boinc       105 Jun 21 04:06 job.xml
[2024-06-21 07:43:08] -rw-r--r-- 2 boinc boinc 616523824 Jun 21 04:06 EVNT.40024047._000018.pool.root.1
[2024-06-21 07:43:08] -rw-r--r-- 2 boinc boinc     17537 Jun 21 04:06 start_atlas.sh
[2024-06-21 07:43:08] drwxrwx--x 2 boinc boinc      4096 Jun 21 04:06 shared
[2024-06-21 07:43:08] -rw-r--r-- 2 boinc boinc    482489 Jun 21 04:06 input.tar.gz
[2024-06-21 07:43:08] -rw-r--r-- 1 boinc boinc      6642 Jun 21 04:06 init_data.xml
[2024-06-21 07:43:08] -rw-r--r-- 1 boinc boinc         0 Jun 21 04:06 boinc_lockfile
[2024-06-21 07:43:08] -rw-r--r-- 1 boinc boinc      2493 Jun 21 04:06 pandaJob.out
[2024-06-21 07:43:08] -rw------- 1 boinc boinc       424 Jun 21 04:06 setup.sh.local
[2024-06-21 07:43:08] -rw------- 1 boinc boinc   1024126 Jun 21 04:06 agis_schedconf.cvmfs.json
[2024-06-21 07:43:08] -rw------- 1 boinc boinc   1321251 Jun 21 04:06 cric_ddmendpoints.json
[2024-06-21 07:43:08] drwx------ 4 boinc boinc      4096 Jun 21 04:06 pilot3
[2024-06-21 07:43:08] -rw-r--r-- 1 boinc boinc       531 Jun 21 07:42 boinc_task_state.xml
[2024-06-21 07:43:08] -rw------- 1 boinc boinc 273608897 Jun 21 07:42 HITS.40024049._000245.pool.root.1
[2024-06-21 07:43:08] -rw------- 1 boinc boinc        95 Jun 21 07:42 pilot_heartbeat.json
[2024-06-21 07:43:08] -rw------- 1 boinc boinc      1039 Jun 21 07:42 memory_monitor_summary.json
[2024-06-21 07:43:08] -rw------- 1 boinc boinc         0 Jun 21 07:42 agis_ddmendpoints.agis.ALL.json
[2024-06-21 07:43:08] -rw------- 1 boinc boinc    338990 Jun 21 07:42 log.40024049._000245.job.log.tgz.1
[2024-06-21 07:43:08] -rw-r--r-- 1 boinc boinc        28 Jun 21 07:42 wrapper_checkpoint.txt
[2024-06-21 07:43:08] -rw-r--r-- 1 boinc boinc      8192 Jun 21 07:42 boinc_mmap_file
[2024-06-21 07:43:08] -rw------- 1 boinc boinc      7711 Jun 21 07:42 heartbeat.json
[2024-06-21 07:43:08] -rw------- 1 boinc boinc      4222 Jun 21 07:43 pilotlog.txt
[2024-06-21 07:43:08] -rw------- 1 boinc boinc   1329097 Jun 21 07:43 log.40024049._000245.job.log.1
[2024-06-21 07:43:08] -rw------- 1 boinc boinc       357 Jun 21 07:43 output.list
[2024-06-21 07:43:08] -rw-r--r-- 1 boinc boinc       620 Jun 21 07:43 runtime_log
[2024-06-21 07:43:08] -rw------- 1 boinc boinc   1689600 Jun 21 07:43 result.tar.gz
[2024-06-21 07:43:08] -rw-r--r-- 1 boinc boinc     11410 Jun 21 07:43 runtime_log.err
[2024-06-21 07:43:08] -rw------- 1 boinc boinc       659 Jun 21 07:43 WeBMDmZwXe5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmMFlKDmSPRz0n.diag
[2024-06-21 07:43:08] -rw-r--r-- 1 boinc boinc     21250 Jun 21 07:43 stderr.txt
[2024-06-21 07:43:08] HITS file was successfully produced:
[2024-06-21 07:43:09] -rw------- 1 boinc boinc 273608897 Jun 21 07:42 shared/HITS.pool.root.1
[2024-06-21 07:43:09]  *** Contents of shared directory: ***
[2024-06-21 07:43:09] total 871428
[2024-06-21 07:43:09] -rw-r--r-- 2 boinc boinc 616523824 Jun 21 04:06 ATLAS.root_0
[2024-06-21 07:43:09] -rw-r--r-- 2 boinc boinc     17537 Jun 21 04:06 start_atlas.sh
[2024-06-21 07:43:09] -rw-r--r-- 2 boinc boinc    482489 Jun 21 04:06 input.tar.gz
[2024-06-21 07:43:09] -rw------- 1 boinc boinc 273608897 Jun 21 07:42 HITS.pool.root.1
[2024-06-21 07:43:09] -rw------- 1 boinc boinc   1689600 Jun 21 07:43 result.tar.gz
07:43:10 (3945063): run_atlas exited; CPU time 47999.868154
07:43:10 (3945063): called boinc_finish(0)

</stderr_txt>
]]>

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