Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:09:40 (668580): wrapper (7.7.26015): starting
02:09:40 (668580): wrapper: running run_atlas (--nthreads 4)
[2024-06-22 02:09:40] Arguments: --nthreads 4
[2024-06-22 02:09:40] Threads: 4
[2024-06-22 02:09:40] Checking for CVMFS
[2024-06-22 02:09:40] No cvmfs_config command found, will try listing directly
[2024-06-22 02:09:40] CVMFS is ok
[2024-06-22 02:09:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-22 02:09:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-22 02:09:40] Further information can be found at the LHC@home message board.
[2024-06-22 02:09:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-22 02:09:40] Checking for apptainer binary...
[2024-06-22 02:09:40] which: no apptainer in ((null))
[2024-06-22 02:09:40] apptainer is not installed, using version from CVMFS
[2024-06-22 02:09:40] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-22 02:09:41] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot44/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut07.grid.cesnet.cz
[2024-06-22 02:09:41] apptainer works
[2024-06-22 02:09:41] Set ATHENA_PROC_NUMBER=4
[2024-06-22 02:09:41] Set ATHENA_CORE_NUMBER=4
[2024-06-22 02:09:41] Starting ATLAS job with PandaID=6238856059
[2024-06-22 02:09:41] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot44/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-22 10:58:36]  *** The last 200 lines of the pilot log: ***
[2024-06-22 10:58:36] 2024-06-22 08:58:14,582 | INFO     | sum of square deviations: 42108147652.5
[2024-06-22 10:58:36] 2024-06-22 08:58:14,589 | INFO     | sum of deviations: 278195026200.0
[2024-06-22 10:58:36] 2024-06-22 08:58:14,589 | INFO     | mean x: 1719030671.5
[2024-06-22 10:58:36] 2024-06-22 08:58:14,589 | INFO     | mean y: 2354839.431906615
[2024-06-22 10:58:36] 2024-06-22 08:58:14,589 | INFO     | -- intersect: -11354729462.711538
[2024-06-22 10:58:36] 2024-06-22 08:58:14,589 | INFO     | intersect: -11354729462.711538
[2024-06-22 10:58:36] 2024-06-22 08:58:14,590 | INFO     | chi2: 4.255894221187484
[2024-06-22 10:58:36] 2024-06-22 08:58:14,590 | INFO     | current chi2=4.255894221187484 (change=-0.005070078862881827 %)
[2024-06-22 10:58:36] 2024-06-22 08:58:14,590 | INFO     | right removable region: 513
[2024-06-22 10:58:36] 2024-06-22 08:58:14,591 | INFO     | model: linear, x: [1719015330.0, 1719015391.0, 1719015452.0, 1719015513.0, 1719015574.0, 1719015635.0, 1719015696.0, 1719015757.0, 1719015818.0, 1719015879.0, 1719
[2024-06-22 10:58:36] 2024-06-22 08:58:14,591 | INFO     | sum of square deviations: 42108147652.5
[2024-06-22 10:58:36] 2024-06-22 08:58:14,598 | INFO     | sum of deviations: 152774404870.4999
[2024-06-22 10:58:36] 2024-06-22 08:58:14,598 | INFO     | mean x: 1719030976.5
[2024-06-22 10:58:36] 2024-06-22 08:58:14,598 | INFO     | mean y: 2370981.36770428
[2024-06-22 10:58:36] 2024-06-22 08:58:14,598 | INFO     | -- intersect: -6234520191.240066
[2024-06-22 10:58:36] 2024-06-22 08:58:14,598 | INFO     | intersect: -6234520191.240066
[2024-06-22 10:58:36] 2024-06-22 08:58:14,599 | INFO     | chi2: 1.6746045260607347
[2024-06-22 10:58:36] 2024-06-22 08:58:14,599 | INFO     | current chi2=1.6746045260607347 (change=60.650116220144824 %)
[2024-06-22 10:58:36] 2024-06-22 08:58:14,600 | INFO     | model: linear, x: [1719015635.0, 1719015696.0, 1719015757.0, 1719015818.0, 1719015879.0, 1719015940.0, 1719016001.0, 1719016062.0, 1719016123.0, 1719016184.0, 1719
[2024-06-22 10:58:36] 2024-06-22 08:58:14,600 | INFO     | sum of square deviations: 40891222510.0
[2024-06-22 10:58:36] 2024-06-22 08:58:14,607 | INFO     | sum of deviations: 49455164095.0
[2024-06-22 10:58:36] 2024-06-22 08:58:14,607 | INFO     | mean x: 1719031129.0
[2024-06-22 10:58:36] 2024-06-22 08:58:14,607 | INFO     | mean y: 2383929.7838899805
[2024-06-22 10:58:36] 2024-06-22 08:58:14,607 | INFO     | -- intersect: -2076667792.0940168
[2024-06-22 10:58:36] 2024-06-22 08:58:14,607 | INFO     | intersect: -2076667792.0940168
[2024-06-22 10:58:36] 2024-06-22 08:58:14,608 | INFO     | chi2: 0.12610222165816368
[2024-06-22 10:58:36] 2024-06-22 08:58:14,608 | INFO     | current chi2=0.12610222165816368 (change=92.46973122933085 %)
[2024-06-22 10:58:36] 2024-06-22 08:58:14,608 | INFO     | model: linear, x: [1719015940.0, 1719016001.0, 1719016062.0, 1719016123.0, 1719016184.0, 1719016245.0, 1719016306.0, 1719016367.0, 1719016428.0, 1719016489.0, 1719
[2024-06-22 10:58:36] 2024-06-22 08:58:14,609 | INFO     | sum of square deviations: 39697972230.0
[2024-06-22 10:58:36] 2024-06-22 08:58:14,615 | INFO     | sum of deviations: 23955320949.5
[2024-06-22 10:58:36] 2024-06-22 08:58:14,615 | INFO     | mean x: 1719031281.5
[2024-06-22 10:58:36] 2024-06-22 08:58:14,615 | INFO     | mean y: 2387179.263888889
[2024-06-22 10:58:36] 2024-06-22 08:58:14,616 | INFO     | -- intersect: -1034944043.398483
[2024-06-22 10:58:36] 2024-06-22 08:58:14,616 | INFO     | intersect: -1034944043.398483
[2024-06-22 10:58:36] 2024-06-22 08:58:14,616 | INFO     | chi2: 0.003387159437910593
[2024-06-22 10:58:36] 2024-06-22 08:58:14,616 | INFO     | current chi2=0.003387159437910593 (change=97.31395736461134 %)
[2024-06-22 10:58:36] 2024-06-22 08:58:14,617 | INFO     | model: linear, x: [1719016245.0, 1719016306.0, 1719016367.0, 1719016428.0, 1719016489.0, 1719016550.0, 1719016611.0, 1719016672.0, 1719016733.0, 1719016794.0, 1719
[2024-06-22 10:58:36] 2024-06-22 08:58:14,617 | INFO     | sum of square deviations: 38528164250.0
[2024-06-22 10:58:36] 2024-06-22 08:58:14,624 | INFO     | sum of deviations: 21301626389.999992
[2024-06-22 10:58:36] 2024-06-22 08:58:14,624 | INFO     | mean x: 1719031434.0
[2024-06-22 10:58:36] 2024-06-22 08:58:14,624 | INFO     | mean y: 2387525.1923847697
[2024-06-22 10:58:36] 2024-06-22 08:58:14,624 | INFO     | -- intersect: -948038379.4037299
[2024-06-22 10:58:36] 2024-06-22 08:58:14,624 | INFO     | intersect: -948038379.4037299
[2024-06-22 10:58:36] 2024-06-22 08:58:14,625 | INFO     | chi2: 0.002710265533281327
[2024-06-22 10:58:36] 2024-06-22 08:58:14,625 | INFO     | current chi2=0.002710265533281327 (change=19.98411698762003 %)
[2024-06-22 10:58:36] 2024-06-22 08:58:14,625 | INFO     | left removable region: 40
[2024-06-22 10:58:36] 2024-06-22 08:58:14,626 | INFO     | model: linear, x: [1719017465.0, 1719017526.0, 1719017587.0, 1719017648.0, 1719017709.0, 1719017770.0, 1719017831.0, 1719017892.0, 1719017953.0, 1719018014.0, 1719
[2024-06-22 10:58:36] 2024-06-22 08:58:14,626 | INFO     | sum of square deviations: 32814055252.0
[2024-06-22 10:58:36] 2024-06-22 08:58:14,632 | INFO     | sum of deviations: 13497180372.000002
[2024-06-22 10:58:36] 2024-06-22 08:58:14,632 | INFO     | mean x: 1719031861.0
[2024-06-22 10:58:36] 2024-06-22 08:58:14,632 | INFO     | mean y: 2388470.3446088796
[2024-06-22 10:58:36] 2024-06-22 08:58:14,632 | INFO     | -- intersect: -704689119.2720442
[2024-06-22 10:58:36] 2024-06-22 08:58:14,632 | INFO     | intersect: -704689119.2720442
[2024-06-22 10:58:36] 2024-06-22 08:58:14,633 | INFO     | chi2: 0.0015702478233980217
[2024-06-22 10:58:36] 2024-06-22 08:58:14,633 | INFO     | -- intersect: -704689119.2720442
[2024-06-22 10:58:36] 2024-06-22 08:58:14,633 | INFO     | current memory leak: 0.41 B/s (using 473 data points, chi2=0.00)
[2024-06-22 10:58:36] 2024-06-22 08:58:14,634 | INFO     | ..............................
[2024-06-22 10:58:36] 2024-06-22 08:58:14,634 | INFO     | . Timing measurements:
[2024-06-22 10:58:36] 2024-06-22 08:58:14,634 | INFO     | . get job = 0 s
[2024-06-22 10:58:36] 2024-06-22 08:58:14,634 | INFO     | . initial setup = 1 s
[2024-06-22 10:58:36] 2024-06-22 08:58:14,634 | INFO     | . payload setup = 6 s
[2024-06-22 10:58:36] 2024-06-22 08:58:14,634 | INFO     | . stage-in = 0 s
[2024-06-22 10:58:36] 2024-06-22 08:58:14,634 | INFO     | . payload execution = 31661 s
[2024-06-22 10:58:36] 2024-06-22 08:58:14,634 | INFO     | . stage-out = 1 s
[2024-06-22 10:58:36] 2024-06-22 08:58:14,635 | INFO     | . log creation = 0 s
[2024-06-22 10:58:36] 2024-06-22 08:58:14,635 | INFO     | ..............................
[2024-06-22 10:58:36] 2024-06-22 08:58:14,699 | INFO     | 
[2024-06-22 10:58:36] 2024-06-22 08:58:14,699 | INFO     | job summary report
[2024-06-22 10:58:36] 2024-06-22 08:58:14,699 | INFO     | --------------------------------------------------
[2024-06-22 10:58:36] 2024-06-22 08:58:14,699 | INFO     | PanDA job id: 6238856059
[2024-06-22 10:58:36] 2024-06-22 08:58:14,699 | INFO     | task id: 38920995
[2024-06-22 10:58:36] 2024-06-22 08:58:14,699 | INFO     | errors: (none)
[2024-06-22 10:58:36] 2024-06-22 08:58:14,700 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-22 10:58:36] 2024-06-22 08:58:14,700 | INFO     | pilot state: finished 
[2024-06-22 10:58:36] 2024-06-22 08:58:14,700 | INFO     | transexitcode: 0
[2024-06-22 10:58:36] 2024-06-22 08:58:14,700 | INFO     | exeerrorcode: 0
[2024-06-22 10:58:36] 2024-06-22 08:58:14,700 | INFO     | exeerrordiag: 
[2024-06-22 10:58:36] 2024-06-22 08:58:14,700 | INFO     | exitcode: 0
[2024-06-22 10:58:36] 2024-06-22 08:58:14,700 | INFO     | exitmsg: OK
[2024-06-22 10:58:36] 2024-06-22 08:58:14,700 | INFO     | cpuconsumptiontime: 122899 s
[2024-06-22 10:58:36] 2024-06-22 08:58:14,700 | INFO     | nevents: 400
[2024-06-22 10:58:36] 2024-06-22 08:58:14,700 | INFO     | neventsw: 0
[2024-06-22 10:58:36] 2024-06-22 08:58:14,700 | INFO     | pid: 680222
[2024-06-22 10:58:36] 2024-06-22 08:58:14,700 | INFO     | pgrp: 680222
[2024-06-22 10:58:36] 2024-06-22 08:58:14,700 | INFO     | corecount: 4
[2024-06-22 10:58:36] 2024-06-22 08:58:14,700 | INFO     | event service: False
[2024-06-22 10:58:36] 2024-06-22 08:58:14,700 | INFO     | sizes: {0: 2387002, 5: 2387208, 11: 2387264, 31672: 2425445, 31673: 2434483, 31683: 2434597}
[2024-06-22 10:58:36] 2024-06-22 08:58:14,700 | INFO     | --------------------------------------------------
[2024-06-22 10:58:36] 2024-06-22 08:58:14,700 | INFO     | 
[2024-06-22 10:58:36] 2024-06-22 08:58:14,700 | INFO     | executing command: ls -lF /scratch/boinc/var/slot44/slots/1
[2024-06-22 10:58:36] 2024-06-22 08:58:14,722 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-22 10:58:36] 2024-06-22 08:58:14,723 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-22 10:58:36] 2024-06-22 08:58:14,723 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-22 10:58:36] 2024-06-22 08:58:14,723 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-22 10:58:36] 2024-06-22 08:58:14,723 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-22 10:58:36] 2024-06-22 08:58:14,723 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-22 10:58:36] 2024-06-22 08:58:14,723 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-22 10:58:36] 2024-06-22 08:58:14,723 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-22 10:58:36] 2024-06-22 08:58:14,723 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-22 10:58:36] 2024-06-22 08:58:14,723 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-22 10:58:36] 2024-06-22 08:58:14,723 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-22 10:58:36] 2024-06-22 08:58:14,723 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-22 10:58:36] 2024-06-22 08:58:14,723 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-22 10:58:36] 2024-06-22 08:58:14,723 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-22 10:58:36] 2024-06-22 08:58:14,724 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-22 10:58:36] 2024-06-22 08:58:14,724 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-22 10:58:36] 2024-06-22 08:58:14,724 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-22 10:58:36] 2024-06-22 08:58:14,724 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-22 10:58:36] 2024-06-22 08:58:14,724 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-22 10:58:36] 2024-06-22 08:58:14,724 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-22 10:58:36] 2024-06-22 08:58:14,724 | INFO     | job 6238856059 has completed (purged errors)
[2024-06-22 10:58:36] 2024-06-22 08:58:14,724 | INFO     | overall cleanup function is called
[2024-06-22 10:58:36] 2024-06-22 08:58:15,731 | INFO     | --- collectZombieJob: --- 10, [680222]
[2024-06-22 10:58:36] 2024-06-22 08:58:15,731 | INFO     | zombie collector waiting for pid 680222
[2024-06-22 10:58:36] 2024-06-22 08:58:15,732 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-22 10:58:36] 2024-06-22 08:58:16,737 | INFO     | collected zombie processes
[2024-06-22 10:58:36] 2024-06-22 08:58:16,737 | INFO     | will now attempt to kill all subprocesses of pid=680222
[2024-06-22 10:58:36] 2024-06-22 08:58:16,911 | INFO     | process IDs to be killed: [680222] (in reverse order)
[2024-06-22 10:58:36] 2024-06-22 08:58:17,051 | WARNING  | found no corresponding commands to process id(s)
[2024-06-22 10:58:36] 2024-06-22 08:58:17,051 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-22 10:58:36] 2024-06-22 08:58:17,062 | INFO     | did not find any defunct processes belonging to 680222
[2024-06-22 10:58:36] 2024-06-22 08:58:17,071 | INFO     | did not find any defunct processes belonging to 680222
[2024-06-22 10:58:36] 2024-06-22 08:58:17,071 | INFO     | ready for new job
[2024-06-22 10:58:36] 2024-06-22 08:58:17,072 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-22 10:58:36] 2024-06-22 08:58:17,075 | INFO     | *************************************
[2024-06-22 10:58:36] 2024-06-22 08:58:17,075 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-22 10:58:36] 2024-06-22 08:58:17,075 | INFO     | *************************************
[2024-06-22 10:58:36] 2024-06-22 08:58:17,075 | INFO     | 
[2024-06-22 10:58:36] 2024-06-22 08:58:17,079 | INFO     | architecture information:
[2024-06-22 10:58:36] 2024-06-22 08:58:17,080 | INFO     | executing command: cat /etc/os-release
[2024-06-22 10:58:36] 2024-06-22 08:58:17,102 | INFO     | cat /etc/os-release:
[2024-06-22 10:58:36] NAME="CentOS Linux"
[2024-06-22 10:58:36] VERSION="7 (Core)"
[2024-06-22 10:58:36] ID="centos"
[2024-06-22 10:58:36] ID_LIKE="rhel fedora"
[2024-06-22 10:58:36] VERSION_ID="7"
[2024-06-22 10:58:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-22 10:58:36] ANSI_COLOR="0;31"
[2024-06-22 10:58:36] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-22 10:58:36] HOME_URL="https://www.centos.org/"
[2024-06-22 10:58:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-22 10:58:36] 
[2024-06-22 10:58:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-22 10:58:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-22 10:58:36] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-22 10:58:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-22 10:58:36] 
[2024-06-22 10:58:36] 2024-06-22 08:58:17,102 | INFO     | *************************************
[2024-06-22 10:58:36] 2024-06-22 08:58:17,605 | INFO     | executing command: df -mP /scratch/boinc/var/slot44/slots/1
[2024-06-22 10:58:36] 2024-06-22 08:58:17,630 | INFO     | sufficient remaining disk space (662330933248 B)
[2024-06-22 10:58:36] 2024-06-22 08:58:17,631 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-22 10:58:36] 2024-06-22 08:58:17,631 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-22 10:58:36] 2024-06-22 08:58:17,631 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-06-22 10:58:36] 2024-06-22 08:58:17,632 | INFO     | found 0 job(s) in 20 queues
[2024-06-22 10:58:36] 2024-06-22 08:58:17,632 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-22 10:58:36] 2024-06-22 08:58:17,632 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-22 10:58:36] 2024-06-22 08:58:17,747 | INFO     | all payload control threads have been joined
[2024-06-22 10:58:36] 2024-06-22 08:58:17,944 | INFO     | all data control threads have been joined
[2024-06-22 10:58:36] 2024-06-22 08:58:17,996 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-06-22 10:58:36] 2024-06-22 08:58:17,997 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-06-22 10:58:36] 2024-06-22 08:58:17,997 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-22 10:58:36] 2024-06-22 08:58:17,997 | INFO     | will abort loop
[2024-06-22 10:58:36] 2024-06-22 08:58:18,357 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-22 10:58:36] 2024-06-22 08:58:18,636 | INFO     | [job] retrieve thread has finished
[2024-06-22 10:58:36] 2024-06-22 08:58:18,668 | INFO     | [job] create_data_payload thread has finished
[2024-06-22 10:58:36] 2024-06-22 08:58:18,753 | INFO     | [payload] control thread has finished
[2024-06-22 10:58:36] 2024-06-22 08:58:18,793 | INFO     | [payload] validate_pre thread has finished
[2024-06-22 10:58:36] 2024-06-22 08:58:18,949 | INFO     | [data] control thread has finished
[2024-06-22 10:58:36] 2024-06-22 08:58:19,002 | INFO     | [job] job monitor thread has finished
[2024-06-22 10:58:36] 2024-06-22 08:58:19,019 | INFO     | all job control threads have been joined
[2024-06-22 10:58:36] 2024-06-22 08:58:19,365 | INFO     | [job] validate thread has finished
[2024-06-22 10:58:36] 2024-06-22 08:58:19,434 | INFO     | [payload] validate_post thread has finished
[2024-06-22 10:58:36] 2024-06-22 08:58:19,504 | INFO     | [payload] failed_post thread has finished
[2024-06-22 10:58:36] 2024-06-22 08:58:19,661 | INFO     | [payload] execute_payloads thread has finished
[2024-06-22 10:58:36] 2024-06-22 08:58:19,709 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-22 10:58:36] 2024-06-22 08:58:19,773 | INFO     | [data] copytool_in thread has finished
[2024-06-22 10:58:36] 2024-06-22 08:58:20,024 | INFO     | [job] control thread has finished
[2024-06-22 10:58:36] 2024-06-22 08:58:20,362 | INFO     | [data] copytool_out thread has finished
[2024-06-22 10:58:36] 2024-06-22 08:58:20,475 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-22 10:58:36] 2024-06-22 08:58:20,714 | INFO     | [job] queue monitor thread has finished
[2024-06-22 10:58:36] 2024-06-22 08:58:24,480 | INFO     | [data] queue_monitor thread has finished
[2024-06-22 10:58:36] 2024-06-22 08:58:27,735 | INFO     | job.realtimelogging is not enabled
[2024-06-22 10:58:36] 2024-06-22 08:58:28,740 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-22 10:58:36] 2024-06-22 08:58:30,197 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 46927603655744)>', '<ExcThread(monitor, started 46927792334592)>']
[2024-06-22 10:58:36] 2024-06-22 08:58:30,697 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-22 10:58:36] 2024-06-22 08:58:30,697 | INFO     | [monitor] control thread has ended
[2024-06-22 10:58:36] 2024-06-22 08:58:35,222 | INFO     | all workflow threads have been joined
[2024-06-22 10:58:36] 2024-06-22 08:58:35,222 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-22 10:58:36] 2024-06-22 08:58:35,222 | INFO     | traces error code: 0
[2024-06-22 10:58:36] 2024-06-22 08:58:35,223 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-22 10:58:36] 2024-06-22 08:58:35,344 [wrapper] ==== pilot stdout END ====
[2024-06-22 10:58:36] 2024-06-22 08:58:35,351 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-22 10:58:36] 2024-06-22 08:58:35,357 [wrapper] pilotpid: 672911
[2024-06-22 10:58:36] 2024-06-22 08:58:35,359 [wrapper] Pilot exit status: 0
[2024-06-22 10:58:36] 2024-06-22 08:58:35,379 [wrapper] pandaids: 6238856059
[2024-06-22 10:58:36] 2024-06-22 08:58:35,465 [wrapper] cleanup supervisor_pilot 1797475 672912
[2024-06-22 10:58:36] 2024-06-22 08:58:35,468 [wrapper] Test setup, not cleaning
[2024-06-22 10:58:36] 2024-06-22 08:58:35,470 [wrapper] ==== wrapper stdout END ====
[2024-06-22 10:58:36] 2024-06-22 08:58:35,475 [wrapper] ==== wrapper stderr END ====
[2024-06-22 10:58:36] 2024-06-22 08:58:35,493 [wrapper] apfmon messages muted
[2024-06-22 10:58:36]  *** Error codes and diagnostics ***
[2024-06-22 10:58:36]     "exeErrorCode": 0,
[2024-06-22 10:58:36]     "exeErrorDiag": "",
[2024-06-22 10:58:36]     "pilotErrorCode": 0,
[2024-06-22 10:58:36]     "pilotErrorDiag": "",
[2024-06-22 10:58:36]  *** Listing of results directory ***
[2024-06-22 10:58:36] total 979596
[2024-06-22 10:58:36] -rw-r--r-- 1 boinc boinc    469766 Jun 20 15:44 pilot3.tar.gz
[2024-06-22 10:58:36] -rw-r--r-- 1 boinc boinc      5654 Jun 20 16:04 queuedata.json
[2024-06-22 10:58:36] -rwx------ 1 boinc boinc     32308 Jun 20 16:04 runpilot2-wrapper.sh
[2024-06-22 10:58:36] -rw-r--r-- 1 boinc boinc       100 Jun 22 02:09 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-22 10:58:36] -rwxr-xr-x 1 boinc boinc      7986 Jun 22 02:09 run_atlas
[2024-06-22 10:58:36] -rw-r--r-- 1 boinc boinc       105 Jun 22 02:09 job.xml
[2024-06-22 10:58:36] -rw-r--r-- 1 boinc boinc      6661 Jun 22 02:09 init_data.xml
[2024-06-22 10:58:36] -rw-r--r-- 2 boinc boinc 637777252 Jun 22 02:09 EVNT.38776180._000939.pool.root.1
[2024-06-22 10:58:36] -rw-r--r-- 2 boinc boinc     17537 Jun 22 02:09 start_atlas.sh
[2024-06-22 10:58:36] drwxrwx--x 2 boinc boinc      4096 Jun 22 02:09 shared
[2024-06-22 10:58:36] -rw-r--r-- 2 boinc boinc    482533 Jun 22 02:09 input.tar.gz
[2024-06-22 10:58:36] -rw-r--r-- 1 boinc boinc         0 Jun 22 02:09 boinc_lockfile
[2024-06-22 10:58:36] -rw-r--r-- 1 boinc boinc      2613 Jun 22 02:09 pandaJob.out
[2024-06-22 10:58:36] -rw------- 1 boinc boinc       424 Jun 22 02:09 setup.sh.local
[2024-06-22 10:58:36] -rw------- 1 boinc boinc   1025961 Jun 22 02:09 agis_schedconf.cvmfs.json
[2024-06-22 10:58:36] -rw------- 1 boinc boinc   1321363 Jun 22 02:09 cric_ddmendpoints.json
[2024-06-22 10:58:36] drwx------ 4 boinc boinc      4096 Jun 22 02:09 pilot3
[2024-06-22 10:58:36] -rw-r--r-- 1 boinc boinc       533 Jun 22 10:57 boinc_task_state.xml
[2024-06-22 10:58:36] -rw------- 1 boinc boinc 353596707 Jun 22 10:57 HITS.38920995._057062.pool.root.1
[2024-06-22 10:58:36] -rw------- 1 boinc boinc        95 Jun 22 10:57 pilot_heartbeat.json
[2024-06-22 10:58:36] -rw------- 1 boinc boinc      1047 Jun 22 10:58 memory_monitor_summary.json
[2024-06-22 10:58:36] -rw------- 1 boinc boinc         0 Jun 22 10:58 agis_ddmendpoints.agis.ALL.json
[2024-06-22 10:58:36] -rw------- 1 boinc boinc    518363 Jun 22 10:58 log.38920995._057062.job.log.tgz.1
[2024-06-22 10:58:36] -rw------- 1 boinc boinc      7765 Jun 22 10:58 heartbeat.json
[2024-06-22 10:58:36] -rw-r--r-- 1 boinc boinc      8192 Jun 22 10:58 boinc_mmap_file
[2024-06-22 10:58:36] -rw-r--r-- 1 boinc boinc        29 Jun 22 10:58 wrapper_checkpoint.txt
[2024-06-22 10:58:36] -rw------- 1 boinc boinc      4602 Jun 22 10:58 pilotlog.txt
[2024-06-22 10:58:36] -rw------- 1 boinc boinc   3578818 Jun 22 10:58 log.38920995._057062.job.log.1
[2024-06-22 10:58:36] -rw------- 1 boinc boinc       357 Jun 22 10:58 output.list
[2024-06-22 10:58:36] -rw-r--r-- 1 boinc boinc       620 Jun 22 10:58 runtime_log
[2024-06-22 10:58:36] -rw------- 1 boinc boinc   4116480 Jun 22 10:58 result.tar.gz
[2024-06-22 10:58:36] -rw------- 1 boinc boinc       660 Jun 22 10:58 kT3LDmoZXe5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmMElKDm4vzunn.diag
[2024-06-22 10:58:36] -rw-r--r-- 1 boinc boinc     11410 Jun 22 10:58 runtime_log.err
[2024-06-22 10:58:36] -rw-r--r-- 1 boinc boinc     21249 Jun 22 10:58 stderr.txt
[2024-06-22 10:58:36] HITS file was successfully produced:
[2024-06-22 10:58:36] -rw------- 1 boinc boinc 353596707 Jun 22 10:57 shared/HITS.pool.root.1
[2024-06-22 10:58:36]  *** Contents of shared directory: ***
[2024-06-22 10:58:36] total 972664
[2024-06-22 10:58:36] -rw-r--r-- 2 boinc boinc 637777252 Jun 22 02:09 ATLAS.root_0
[2024-06-22 10:58:36] -rw-r--r-- 2 boinc boinc     17537 Jun 22 02:09 start_atlas.sh
[2024-06-22 10:58:36] -rw-r--r-- 2 boinc boinc    482533 Jun 22 02:09 input.tar.gz
[2024-06-22 10:58:36] -rw------- 1 boinc boinc 353596707 Jun 22 10:57 HITS.pool.root.1
[2024-06-22 10:58:36] -rw------- 1 boinc boinc   4116480 Jun 22 10:58 result.tar.gz
10:58:37 (668580): run_atlas exited; CPU time 122413.938974
10:58:37 (668580): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN