Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:25:05 (1556029): wrapper (7.7.26015): starting
02:25:05 (1556029): wrapper: running run_atlas (--nthreads 4)
[2024-06-21 02:25:05] Arguments: --nthreads 4
[2024-06-21 02:25:05] Threads: 4
[2024-06-21 02:25:05] Checking for CVMFS
[2024-06-21 02:25:05] No cvmfs_config command found, will try listing directly
[2024-06-21 02:25:05] CVMFS is ok
[2024-06-21 02:25:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-21 02:25:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-21 02:25:05] Further information can be found at the LHC@home message board.
[2024-06-21 02:25:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-21 02:25:05] Checking for apptainer binary...
[2024-06-21 02:25:05] which: no apptainer in ((null))
[2024-06-21 02:25:05] apptainer is not installed, using version from CVMFS
[2024-06-21 02:25:05] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-21 02:25:06] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut07.grid.cesnet.cz
[2024-06-21 02:25:06] apptainer works
[2024-06-21 02:25:06] Set ATHENA_PROC_NUMBER=4
[2024-06-21 02:25:06] Set ATHENA_CORE_NUMBER=4
[2024-06-21 02:25:07] Starting ATLAS job with PandaID=6238851671
[2024-06-21 02:25:07] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-21 07:06:05]  *** The last 200 lines of the pilot log: ***
[2024-06-21 07:06:05] 2024-06-21 05:05:51,756 | INFO     | fitting pss+swap vs Time
[2024-06-21 07:06:05] 2024-06-21 05:05:51,757 | INFO     | model: linear, x: [1718929542.0, 1718929603.0, 1718929664.0, 1718929725.0, 1718929786.0, 1718929847.0, 1718929908.0, 1718929969.0, 1718930030.0, 1718930091.0, 1718
[2024-06-21 07:06:05] 2024-06-21 05:05:51,757 | INFO     | sum of square deviations: 6519285025.0
[2024-06-21 07:06:05] 2024-06-21 05:05:51,759 | INFO     | sum of deviations: 114974058643.5
[2024-06-21 07:06:05] 2024-06-21 05:05:51,760 | INFO     | mean x: 1718937929.5
[2024-06-21 07:06:05] 2024-06-21 05:05:51,760 | INFO     | mean y: 2312512.2065217393
[2024-06-21 07:06:05] 2024-06-21 05:05:51,760 | INFO     | -- intersect: -30312863086.496418
[2024-06-21 07:06:05] 2024-06-21 05:05:51,760 | INFO     | intersect: -30312863086.496418
[2024-06-21 07:06:05] 2024-06-21 05:05:51,760 | INFO     | chi2: 4.943027088352027
[2024-06-21 07:06:05] 2024-06-21 05:05:51,761 | INFO     | model: linear, x: [1718929542.0, 1718929603.0, 1718929664.0, 1718929725.0, 1718929786.0, 1718929847.0, 1718929908.0, 1718929969.0, 1718930030.0, 1718930091.0, 1718
[2024-06-21 07:06:05] 2024-06-21 05:05:51,761 | INFO     | sum of square deviations: 6171352920.0
[2024-06-21 07:06:05] 2024-06-21 05:05:51,763 | INFO     | sum of deviations: 130373121385.0
[2024-06-21 07:06:05] 2024-06-21 05:05:51,763 | INFO     | mean x: 1718937777.0
[2024-06-21 07:06:05] 2024-06-21 05:05:51,763 | INFO     | mean y: 2319146.5129151293
[2024-06-21 07:06:05] 2024-06-21 05:05:51,763 | INFO     | -- intersect: -36311158037.36576
[2024-06-21 07:06:05] 2024-06-21 05:05:51,763 | INFO     | intersect: -36311158037.36576
[2024-06-21 07:06:05] 2024-06-21 05:05:51,764 | INFO     | chi2: 4.143749656579063
[2024-06-21 07:06:05] 2024-06-21 05:05:51,764 | INFO     | current chi2=4.143749656579063 (change=16.16979671538555 %)
[2024-06-21 07:06:05] 2024-06-21 05:05:51,764 | INFO     | right removable region: 270
[2024-06-21 07:06:05] 2024-06-21 05:05:51,764 | INFO     | model: linear, x: [1718929847.0, 1718929908.0, 1718929969.0, 1718930030.0, 1718930091.0, 1718930152.0, 1718930213.0, 1718930274.0, 1718930335.0, 1718930396.0, 1718
[2024-06-21 07:06:05] 2024-06-21 05:05:51,764 | INFO     | sum of square deviations: 6171352920.0
[2024-06-21 07:06:05] 2024-06-21 05:05:51,766 | INFO     | sum of deviations: 49757642782.0
[2024-06-21 07:06:05] 2024-06-21 05:05:51,766 | INFO     | mean x: 1718938082.0
[2024-06-21 07:06:05] 2024-06-21 05:05:51,766 | INFO     | mean y: 2341037.4243542436
[2024-06-21 07:06:05] 2024-06-21 05:05:51,766 | INFO     | -- intersect: -13856906384.862463
[2024-06-21 07:06:05] 2024-06-21 05:05:51,766 | INFO     | intersect: -13856906384.862463
[2024-06-21 07:06:05] 2024-06-21 05:05:51,766 | INFO     | chi2: 2.4449810824303637
[2024-06-21 07:06:05] 2024-06-21 05:05:51,766 | INFO     | current chi2=2.4449810824303637 (change=50.53676545305956 %)
[2024-06-21 07:06:05] 2024-06-21 05:05:51,766 | INFO     | model: linear, x: [1718930152.0, 1718930213.0, 1718930274.0, 1718930335.0, 1718930396.0, 1718930457.0, 1718930518.0, 1718930579.0, 1718930640.0, 1718930701.0, 1718
[2024-06-21 07:06:05] 2024-06-21 05:05:51,766 | INFO     | sum of square deviations: 5836025702.5
[2024-06-21 07:06:05] 2024-06-21 05:05:51,768 | INFO     | sum of deviations: -3674974340.999998
[2024-06-21 07:06:05] 2024-06-21 05:05:51,768 | INFO     | mean x: 1718938234.5
[2024-06-21 07:06:05] 2024-06-21 05:05:51,768 | INFO     | mean y: 2365339.4661654136
[2024-06-21 07:06:05] 2024-06-21 05:05:51,768 | INFO     | -- intersect: 1084789274.4473424
[2024-06-21 07:06:05] 2024-06-21 05:05:51,768 | INFO     | intersect: 1084789274.4473424
[2024-06-21 07:06:05] 2024-06-21 05:05:51,768 | INFO     | chi2: 0.9093387073186608
[2024-06-21 07:06:05] 2024-06-21 05:05:51,768 | INFO     | current chi2=0.9093387073186608 (change=62.80794506537618 %)
[2024-06-21 07:06:05] 2024-06-21 05:05:51,768 | INFO     | model: linear, x: [1718930457.0, 1718930518.0, 1718930579.0, 1718930640.0, 1718930701.0, 1718930762.0, 1718930823.0, 1718930884.0, 1718930945.0, 1718931006.0, 1718
[2024-06-21 07:06:05] 2024-06-21 05:05:51,768 | INFO     | sum of square deviations: 5513070810.0
[2024-06-21 07:06:05] 2024-06-21 05:05:51,769 | INFO     | sum of deviations: -11224199104.0
[2024-06-21 07:06:05] 2024-06-21 05:05:51,770 | INFO     | mean x: 1718938387.0
[2024-06-21 07:06:05] 2024-06-21 05:05:51,770 | INFO     | mean y: 2368866.111111111
[2024-06-21 07:06:05] 2024-06-21 05:05:51,770 | INFO     | -- intersect: 3501998631.1052966
[2024-06-21 07:06:05] 2024-06-21 05:05:51,770 | INFO     | intersect: 3501998631.1052966
[2024-06-21 07:06:05] 2024-06-21 05:05:51,770 | INFO     | chi2: 0.8377767428885992
[2024-06-21 07:06:05] 2024-06-21 05:05:51,770 | INFO     | current chi2=0.8377767428885992 (change=7.869670987730662 %)
[2024-06-21 07:06:05] 2024-06-21 05:05:51,770 | INFO     | left removable region: 30
[2024-06-21 07:06:05] 2024-06-21 05:05:51,770 | INFO     | model: linear, x: [1718931372.0, 1718931433.0, 1718931494.0, 1718931555.0, 1718931616.0, 1718931677.0, 1718931738.0, 1718931799.0, 1718931860.0, 1718931921.0, 1718
[2024-06-21 07:06:05] 2024-06-21 05:05:51,770 | INFO     | sum of square deviations: 4286517580.0
[2024-06-21 07:06:05] 2024-06-21 05:05:51,771 | INFO     | sum of deviations: 4997389833.500001
[2024-06-21 07:06:05] 2024-06-21 05:05:51,771 | INFO     | mean x: 1718938661.5
[2024-06-21 07:06:05] 2024-06-21 05:05:51,771 | INFO     | mean y: 2377220.8041666667
[2024-06-21 07:06:05] 2024-06-21 05:05:51,772 | INFO     | -- intersect: -2001628695.6699238
[2024-06-21 07:06:05] 2024-06-21 05:05:51,772 | INFO     | intersect: -2001628695.6699238
[2024-06-21 07:06:05] 2024-06-21 05:05:51,772 | INFO     | chi2: 0.0027930417195728596
[2024-06-21 07:06:05] 2024-06-21 05:05:51,772 | INFO     | -- intersect: -2001628695.6699238
[2024-06-21 07:06:05] 2024-06-21 05:05:51,772 | INFO     | current memory leak: 1.17 B/s (using 240 data points, chi2=0.00)
[2024-06-21 07:06:05] 2024-06-21 05:05:51,772 | INFO     | ..............................
[2024-06-21 07:06:05] 2024-06-21 05:05:51,772 | INFO     | . Timing measurements:
[2024-06-21 07:06:05] 2024-06-21 05:05:51,772 | INFO     | . get job = 0 s
[2024-06-21 07:06:05] 2024-06-21 05:05:51,772 | INFO     | . initial setup = 1 s
[2024-06-21 07:06:05] 2024-06-21 05:05:51,773 | INFO     | . payload setup = 4 s
[2024-06-21 07:06:05] 2024-06-21 05:05:51,773 | INFO     | . stage-in = 0 s
[2024-06-21 07:06:05] 2024-06-21 05:05:51,773 | INFO     | . payload execution = 16803 s
[2024-06-21 07:06:05] 2024-06-21 05:05:51,773 | INFO     | . stage-out = 1 s
[2024-06-21 07:06:05] 2024-06-21 05:05:51,773 | INFO     | . log creation = 0 s
[2024-06-21 07:06:05] 2024-06-21 05:05:51,773 | INFO     | ..............................
[2024-06-21 07:06:05] 2024-06-21 05:05:51,829 | INFO     | 
[2024-06-21 07:06:05] 2024-06-21 05:05:51,829 | INFO     | job summary report
[2024-06-21 07:06:05] 2024-06-21 05:05:51,829 | INFO     | --------------------------------------------------
[2024-06-21 07:06:05] 2024-06-21 05:05:51,829 | INFO     | PanDA job id: 6238851671
[2024-06-21 07:06:05] 2024-06-21 05:05:51,829 | INFO     | task id: 40024040
[2024-06-21 07:06:05] 2024-06-21 05:05:51,829 | INFO     | errors: (none)
[2024-06-21 07:06:05] 2024-06-21 05:05:51,829 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-21 07:06:05] 2024-06-21 05:05:51,829 | INFO     | pilot state: finished 
[2024-06-21 07:06:05] 2024-06-21 05:05:51,829 | INFO     | transexitcode: 0
[2024-06-21 07:06:05] 2024-06-21 05:05:51,829 | INFO     | exeerrorcode: 0
[2024-06-21 07:06:05] 2024-06-21 05:05:51,829 | INFO     | exeerrordiag: 
[2024-06-21 07:06:05] 2024-06-21 05:05:51,829 | INFO     | exitcode: 0
[2024-06-21 07:06:05] 2024-06-21 05:05:51,829 | INFO     | exitmsg: OK
[2024-06-21 07:06:05] 2024-06-21 05:05:51,829 | INFO     | cpuconsumptiontime: 63895 s
[2024-06-21 07:06:05] 2024-06-21 05:05:51,829 | INFO     | nevents: 400
[2024-06-21 07:06:05] 2024-06-21 05:05:51,829 | INFO     | neventsw: 0
[2024-06-21 07:06:05] 2024-06-21 05:05:51,830 | INFO     | pid: 1567357
[2024-06-21 07:06:05] 2024-06-21 05:05:51,830 | INFO     | pgrp: 1567357
[2024-06-21 07:06:05] 2024-06-21 05:05:51,830 | INFO     | corecount: 4
[2024-06-21 07:06:05] 2024-06-21 05:05:51,830 | INFO     | event service: False
[2024-06-21 07:06:05] 2024-06-21 05:05:51,830 | INFO     | sizes: {0: 2386855, 4: 2387061, 11: 2387089, 16811: 2418834, 16813: 2427816, 16816: 2427872, 16820: 2428170}
[2024-06-21 07:06:05] 2024-06-21 05:05:51,830 | INFO     | --------------------------------------------------
[2024-06-21 07:06:05] 2024-06-21 05:05:51,830 | INFO     | 
[2024-06-21 07:06:05] 2024-06-21 05:05:51,830 | INFO     | executing command: ls -lF /scratch/boinc/var/slot40/slots/0
[2024-06-21 07:06:05] 2024-06-21 05:05:51,883 | WARNING  | process 1567357 is no longer using CPU - aborting
[2024-06-21 07:06:05] 2024-06-21 05:05:51,883 | INFO     | aborting job monitoring since job object (job id=6238851671) has expired
[2024-06-21 07:06:05] 2024-06-21 05:05:51,901 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-21 07:06:05] 2024-06-21 05:05:51,902 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-21 07:06:05] 2024-06-21 05:05:51,902 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-21 07:06:05] 2024-06-21 05:05:51,902 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-21 07:06:05] 2024-06-21 05:05:51,902 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-21 07:06:05] 2024-06-21 05:05:51,902 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-21 07:06:05] 2024-06-21 05:05:51,902 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-21 07:06:05] 2024-06-21 05:05:51,902 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-21 07:06:05] 2024-06-21 05:05:51,903 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-21 07:06:05] 2024-06-21 05:05:51,903 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-21 07:06:05] 2024-06-21 05:05:51,903 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-21 07:06:05] 2024-06-21 05:05:51,903 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-21 07:06:05] 2024-06-21 05:05:51,903 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-21 07:06:05] 2024-06-21 05:05:51,903 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-21 07:06:05] 2024-06-21 05:05:51,903 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-21 07:06:05] 2024-06-21 05:05:51,903 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-21 07:06:05] 2024-06-21 05:05:51,903 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-21 07:06:05] 2024-06-21 05:05:51,903 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-21 07:06:05] 2024-06-21 05:05:51,903 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-21 07:06:05] 2024-06-21 05:05:51,903 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-21 07:06:05] 2024-06-21 05:05:51,904 | INFO     | job 6238851671 has completed (purged errors)
[2024-06-21 07:06:05] 2024-06-21 05:05:51,904 | INFO     | overall cleanup function is called
[2024-06-21 07:06:05] 2024-06-21 05:05:52,911 | INFO     | --- collectZombieJob: --- 10, [1567357]
[2024-06-21 07:06:05] 2024-06-21 05:05:52,911 | INFO     | zombie collector waiting for pid 1567357
[2024-06-21 07:06:05] 2024-06-21 05:05:52,911 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-21 07:06:05] 2024-06-21 05:05:53,916 | INFO     | collected zombie processes
[2024-06-21 07:06:05] 2024-06-21 05:05:53,916 | INFO     | will now attempt to kill all subprocesses of pid=1567357
[2024-06-21 07:06:05] 2024-06-21 05:05:54,060 | INFO     | process IDs to be killed: [1567357] (in reverse order)
[2024-06-21 07:06:05] 2024-06-21 05:05:54,159 | WARNING  | found no corresponding commands to process id(s)
[2024-06-21 07:06:05] 2024-06-21 05:05:54,159 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-21 07:06:05] 2024-06-21 05:05:54,166 | INFO     | did not find any defunct processes belonging to 1567357
[2024-06-21 07:06:05] 2024-06-21 05:05:54,172 | INFO     | did not find any defunct processes belonging to 1567357
[2024-06-21 07:06:05] 2024-06-21 05:05:54,172 | INFO     | ready for new job
[2024-06-21 07:06:05] 2024-06-21 05:05:54,172 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-21 07:06:05] 2024-06-21 05:05:54,174 | INFO     | *************************************
[2024-06-21 07:06:05] 2024-06-21 05:05:54,174 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-21 07:06:05] 2024-06-21 05:05:54,174 | INFO     | *************************************
[2024-06-21 07:06:05] 2024-06-21 05:05:54,174 | INFO     | 
[2024-06-21 07:06:05] 2024-06-21 05:05:54,177 | INFO     | architecture information:
[2024-06-21 07:06:05] 2024-06-21 05:05:54,177 | INFO     | executing command: cat /etc/os-release
[2024-06-21 07:06:05] 2024-06-21 05:05:54,192 | INFO     | cat /etc/os-release:
[2024-06-21 07:06:05] NAME="CentOS Linux"
[2024-06-21 07:06:05] VERSION="7 (Core)"
[2024-06-21 07:06:05] ID="centos"
[2024-06-21 07:06:05] ID_LIKE="rhel fedora"
[2024-06-21 07:06:05] VERSION_ID="7"
[2024-06-21 07:06:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-21 07:06:05] ANSI_COLOR="0;31"
[2024-06-21 07:06:05] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-21 07:06:05] HOME_URL="https://www.centos.org/"
[2024-06-21 07:06:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-21 07:06:05] 
[2024-06-21 07:06:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-21 07:06:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-21 07:06:05] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-21 07:06:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-21 07:06:05] 
[2024-06-21 07:06:05] 2024-06-21 05:05:54,192 | INFO     | *************************************
[2024-06-21 07:06:05] 2024-06-21 05:05:54,695 | INFO     | executing command: df -mP /scratch/boinc/var/slot40/slots/0
[2024-06-21 07:06:05] 2024-06-21 05:05:54,719 | INFO     | sufficient remaining disk space (664574885888 B)
[2024-06-21 07:06:05] 2024-06-21 05:05:54,719 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-21 07:06:05] 2024-06-21 05:05:54,720 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-21 07:06:05] 2024-06-21 05:05:54,720 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-06-21 07:06:05] 2024-06-21 05:05:54,720 | INFO     | found 0 job(s) in 20 queues
[2024-06-21 07:06:05] 2024-06-21 05:05:54,721 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-21 07:06:05] 2024-06-21 05:05:54,721 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-21 07:06:05] 2024-06-21 05:05:54,721 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-21 07:06:05] 2024-06-21 05:05:54,931 | INFO     | all data control threads have been joined
[2024-06-21 07:06:05] 2024-06-21 05:05:55,126 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-21 07:06:05] 2024-06-21 05:05:55,244 | INFO     | all job control threads have been joined
[2024-06-21 07:06:05] 2024-06-21 05:05:55,391 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-21 07:06:05] 2024-06-21 05:05:55,391 | INFO     | aborting loop
[2024-06-21 07:06:05] 2024-06-21 05:05:55,725 | INFO     | [job] retrieve thread has finished
[2024-06-21 07:06:05] 2024-06-21 05:05:55,732 | INFO     | [payload] validate_pre thread has finished
[2024-06-21 07:06:05] 2024-06-21 05:05:55,936 | INFO     | [data] control thread has finished
[2024-06-21 07:06:05] 2024-06-21 05:05:56,041 | INFO     | all payload control threads have been joined
[2024-06-21 07:06:05] 2024-06-21 05:05:56,249 | INFO     | [job] control thread has finished
[2024-06-21 07:06:05] 2024-06-21 05:05:56,297 | INFO     | [payload] execute_payloads thread has finished
[2024-06-21 07:06:05] 2024-06-21 05:05:56,305 | INFO     | [job] validate thread has finished
[2024-06-21 07:06:05] 2024-06-21 05:05:56,396 | INFO     | [job] job monitor thread has finished
[2024-06-21 07:06:05] 2024-06-21 05:05:56,440 | INFO     | [payload] failed_post thread has finished
[2024-06-21 07:06:05] 2024-06-21 05:05:56,839 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-21 07:06:05] 2024-06-21 05:05:56,955 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-21 07:06:05] 2024-06-21 05:05:57,009 | INFO     | [job] create_data_payload thread has finished
[2024-06-21 07:06:05] 2024-06-21 05:05:57,046 | INFO     | [payload] control thread has finished
[2024-06-21 07:06:05] 2024-06-21 05:05:57,123 | INFO     | [data] copytool_in thread has finished
[2024-06-21 07:06:05] 2024-06-21 05:05:57,131 | INFO     | [data] copytool_out thread has finished
[2024-06-21 07:06:05] 2024-06-21 05:05:57,157 | INFO     | [payload] validate_post thread has finished
[2024-06-21 07:06:05] 2024-06-21 05:05:57,844 | INFO     | [job] queue monitor thread has finished
[2024-06-21 07:06:05] 2024-06-21 05:05:58,724 | INFO     | [data] queue_monitor thread has finished
[2024-06-21 07:06:05] 2024-06-21 05:05:59,150 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47200225170496)>', '<ExcThread(monitor, started 47200411748096)>']
[2024-06-21 07:06:05] 2024-06-21 05:05:59,741 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-21 07:06:05] 2024-06-21 05:05:59,741 | INFO     | [monitor] control thread has ended
[2024-06-21 07:06:05] 2024-06-21 05:06:04,175 | INFO     | all workflow threads have been joined
[2024-06-21 07:06:05] 2024-06-21 05:06:04,175 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-21 07:06:05] 2024-06-21 05:06:04,175 | INFO     | traces error code: 0
[2024-06-21 07:06:05] 2024-06-21 05:06:04,176 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-21 07:06:05] 2024-06-21 05:06:04,286 [wrapper] ==== pilot stdout END ====
[2024-06-21 07:06:05] 2024-06-21 05:06:04,288 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-21 07:06:05] 2024-06-21 05:06:04,290 [wrapper] pilotpid: 1560361
[2024-06-21 07:06:05] 2024-06-21 05:06:04,291 [wrapper] Pilot exit status: 0
[2024-06-21 07:06:05] 2024-06-21 05:06:04,298 [wrapper] pandaids: 6238851671
[2024-06-21 07:06:05] 2024-06-21 05:06:04,358 [wrapper] cleanup supervisor_pilot 2215084 1560362
[2024-06-21 07:06:05] 2024-06-21 05:06:04,360 [wrapper] Test setup, not cleaning
[2024-06-21 07:06:05] 2024-06-21 05:06:04,362 [wrapper] ==== wrapper stdout END ====
[2024-06-21 07:06:05] 2024-06-21 05:06:04,364 [wrapper] ==== wrapper stderr END ====
[2024-06-21 07:06:05] 2024-06-21 05:06:04,367 [wrapper] apfmon messages muted
[2024-06-21 07:06:05]  *** Error codes and diagnostics ***
[2024-06-21 07:06:05]     "exeErrorCode": 0,
[2024-06-21 07:06:05]     "exeErrorDiag": "",
[2024-06-21 07:06:05]     "pilotErrorCode": 0,
[2024-06-21 07:06:05]     "pilotErrorDiag": "",
[2024-06-21 07:06:05]  *** Listing of results directory ***
[2024-06-21 07:06:05] total 877040
[2024-06-21 07:06:05] -rw-r--r-- 1 boinc boinc    469766 Jun 20 15:44 pilot3.tar.gz
[2024-06-21 07:06:05] -rwx------ 1 boinc boinc     32308 Jun 20 15:47 runpilot2-wrapper.sh
[2024-06-21 07:06:05] -rw-r--r-- 1 boinc boinc      5654 Jun 20 15:47 queuedata.json
[2024-06-21 07:06:05] -rw-r--r-- 1 boinc boinc       100 Jun 21 02:24 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-21 07:06:05] -rwxr-xr-x 1 boinc boinc      7986 Jun 21 02:24 run_atlas
[2024-06-21 07:06:05] -rw-r--r-- 1 boinc boinc       105 Jun 21 02:24 job.xml
[2024-06-21 07:06:05] -rw-r--r-- 1 boinc boinc      6661 Jun 21 02:25 init_data.xml
[2024-06-21 07:06:05] -rw-r--r-- 2 boinc boinc 610399117 Jun 21 02:25 EVNT.40024038._000048.pool.root.1
[2024-06-21 07:06:05] -rw-r--r-- 2 boinc boinc     17537 Jun 21 02:25 start_atlas.sh
[2024-06-21 07:06:05] drwxrwx--x 2 boinc boinc      4096 Jun 21 02:25 shared
[2024-06-21 07:06:05] -rw-r--r-- 2 boinc boinc    482473 Jun 21 02:25 input.tar.gz
[2024-06-21 07:06:05] -rw-r--r-- 1 boinc boinc         0 Jun 21 02:25 boinc_lockfile
[2024-06-21 07:06:05] -rw-r--r-- 1 boinc boinc      2489 Jun 21 02:25 pandaJob.out
[2024-06-21 07:06:05] -rw------- 1 boinc boinc       424 Jun 21 02:25 setup.sh.local
[2024-06-21 07:06:05] -rw------- 1 boinc boinc   1024134 Jun 21 02:25 agis_schedconf.cvmfs.json
[2024-06-21 07:06:05] -rw------- 1 boinc boinc   1321251 Jun 21 02:25 cric_ddmendpoints.json
[2024-06-21 07:06:05] drwx------ 4 boinc boinc      4096 Jun 21 02:25 pilot3
[2024-06-21 07:06:05] -rw------- 1 boinc boinc 279949364 Jun 21 07:05 HITS.40024040._000694.pool.root.1
[2024-06-21 07:06:05] -rw------- 1 boinc boinc        95 Jun 21 07:05 pilot_heartbeat.json
[2024-06-21 07:06:05] -rw-r--r-- 1 boinc boinc       532 Jun 21 07:05 boinc_task_state.xml
[2024-06-21 07:06:05] -rw------- 1 boinc boinc      1042 Jun 21 07:05 memory_monitor_summary.json
[2024-06-21 07:06:05] -rw------- 1 boinc boinc         0 Jun 21 07:05 agis_ddmendpoints.agis.ALL.json
[2024-06-21 07:06:05] -rw------- 1 boinc boinc    374707 Jun 21 07:05 log.40024040._000694.job.log.tgz.1
[2024-06-21 07:06:05] -rw------- 1 boinc boinc      7750 Jun 21 07:05 heartbeat.json
[2024-06-21 07:06:05] -rw-r--r-- 1 boinc boinc        28 Jun 21 07:05 wrapper_checkpoint.txt
[2024-06-21 07:06:05] -rw-r--r-- 1 boinc boinc      8192 Jun 21 07:05 boinc_mmap_file
[2024-06-21 07:06:05] -rw------- 1 boinc boinc      4344 Jun 21 07:06 pilotlog.txt
[2024-06-21 07:06:05] -rw------- 1 boinc boinc   1724374 Jun 21 07:06 log.40024040._000694.job.log.1
[2024-06-21 07:06:05] -rw------- 1 boinc boinc       357 Jun 21 07:06 output.list
[2024-06-21 07:06:05] -rw-r--r-- 1 boinc boinc       620 Jun 21 07:06 runtime_log
[2024-06-21 07:06:05] -rw------- 1 boinc boinc   2119680 Jun 21 07:06 result.tar.gz
[2024-06-21 07:06:05] -rw-r--r-- 1 boinc boinc     11410 Jun 21 07:06 runtime_log.err
[2024-06-21 07:06:05] -rw------- 1 boinc boinc       657 Jun 21 07:06 2IYNDmTJXe5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmkDlKDm9161xn.diag
[2024-06-21 07:06:05] -rw-r--r-- 1 boinc boinc     21361 Jun 21 07:06 stderr.txt
[2024-06-21 07:06:05] HITS file was successfully produced:
[2024-06-21 07:06:05] -rw------- 1 boinc boinc 279949364 Jun 21 07:05 shared/HITS.pool.root.1
[2024-06-21 07:06:05]  *** Contents of shared directory: ***
[2024-06-21 07:06:05] total 872060
[2024-06-21 07:06:05] -rw-r--r-- 2 boinc boinc 610399117 Jun 21 02:25 ATLAS.root_0
[2024-06-21 07:06:05] -rw-r--r-- 2 boinc boinc     17537 Jun 21 02:25 start_atlas.sh
[2024-06-21 07:06:05] -rw-r--r-- 2 boinc boinc    482473 Jun 21 02:25 input.tar.gz
[2024-06-21 07:06:05] -rw------- 1 boinc boinc 279949364 Jun 21 07:05 HITS.pool.root.1
[2024-06-21 07:06:05] -rw------- 1 boinc boinc   2119680 Jun 21 07:06 result.tar.gz
07:06:06 (1556029): run_atlas exited; CPU time 63614.937485
07:06:06 (1556029): called boinc_finish(0)

</stderr_txt>
]]>

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