Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:03:47 (91227): wrapper (7.7.26015): starting
21:03:47 (91227): wrapper: running run_atlas (--nthreads 4)
[2024-06-21 21:03:47] Arguments: --nthreads 4
[2024-06-21 21:03:47] Threads: 4
[2024-06-21 21:03:47] Checking for CVMFS
[2024-06-21 21:03:47] No cvmfs_config command found, will try listing directly
[2024-06-21 21:03:47] CVMFS is ok
[2024-06-21 21:03:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-21 21:03:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-21 21:03:47] Further information can be found at the LHC@home message board.
[2024-06-21 21:03:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-21 21:03:47] Checking for apptainer binary...
[2024-06-21 21:03:47] which: no apptainer in ((null))
[2024-06-21 21:03:47] apptainer is not installed, using version from CVMFS
[2024-06-21 21:03:47] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-21 21:03:48] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot64/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut05.grid.cesnet.cz
[2024-06-21 21:03:48] apptainer works
[2024-06-21 21:03:48] Set ATHENA_PROC_NUMBER=4
[2024-06-21 21:03:48] Set ATHENA_CORE_NUMBER=4
[2024-06-21 21:03:48] Starting ATLAS job with PandaID=6238851662
[2024-06-21 21:03:48] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot64/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-22 01:29:21]  *** The last 200 lines of the pilot log: ***
[2024-06-22 01:29:21] 2024-06-21 23:29:05,092 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-06-22 01:29:21] 2024-06-21 23:29:05,095 | INFO     | fitting pss+swap vs Time
[2024-06-22 01:29:21] 2024-06-21 23:29:05,095 | INFO     | model: linear, x: [1718996663.0, 1718996724.0, 1718996785.0, 1718996846.0, 1718996907.0, 1718996968.0, 1718997029.0, 1718997090.0, 1718997151.0, 1718997212.0, 1718
[2024-06-22 01:29:21] 2024-06-21 23:29:05,095 | INFO     | sum of square deviations: 5513070810.0
[2024-06-22 01:29:21] 2024-06-21 23:29:05,096 | INFO     | sum of deviations: 108917966717.99998
[2024-06-22 01:29:21] 2024-06-21 23:29:05,096 | INFO     | mean x: 1719004593.0
[2024-06-22 01:29:21] 2024-06-21 23:29:05,097 | INFO     | mean y: 2301219.9042145596
[2024-06-22 01:29:21] 2024-06-21 23:29:05,097 | INFO     | -- intersect: -33958895996.87217
[2024-06-22 01:29:21] 2024-06-21 23:29:05,097 | INFO     | intersect: -33958895996.87217
[2024-06-22 01:29:21] 2024-06-21 23:29:05,097 | INFO     | chi2: 4.878084933501383
[2024-06-22 01:29:21] 2024-06-21 23:29:05,097 | INFO     | model: linear, x: [1718996663.0, 1718996724.0, 1718996785.0, 1718996846.0, 1718996907.0, 1718996968.0, 1718997029.0, 1718997090.0, 1718997151.0, 1718997212.0, 1718
[2024-06-22 01:29:21] 2024-06-21 23:29:05,097 | INFO     | sum of square deviations: 5202255680.0
[2024-06-22 01:29:21] 2024-06-21 23:29:05,099 | INFO     | sum of deviations: 123125602591.5
[2024-06-22 01:29:21] 2024-06-21 23:29:05,099 | INFO     | mean x: 1719004440.5
[2024-06-22 01:29:21] 2024-06-21 23:29:05,099 | INFO     | mean y: 2308063.41796875
[2024-06-22 01:29:21] 2024-06-21 23:29:05,099 | INFO     | -- intersect: -40682631434.60124
[2024-06-22 01:29:21] 2024-06-21 23:29:05,099 | INFO     | intersect: -40682631434.60124
[2024-06-22 01:29:21] 2024-06-21 23:29:05,099 | INFO     | chi2: 4.08870837382443
[2024-06-22 01:29:21] 2024-06-21 23:29:05,099 | INFO     | current chi2=4.08870837382443 (change=16.182099541886334 %)
[2024-06-22 01:29:21] 2024-06-21 23:29:05,099 | INFO     | right removable region: 255
[2024-06-22 01:29:21] 2024-06-21 23:29:05,099 | INFO     | model: linear, x: [1718996968.0, 1718997029.0, 1718997090.0, 1718997151.0, 1718997212.0, 1718997273.0, 1718997334.0, 1718997395.0, 1718997456.0, 1718997517.0, 1718
[2024-06-22 01:29:21] 2024-06-21 23:29:05,100 | INFO     | sum of square deviations: 5202255680.0
[2024-06-22 01:29:21] 2024-06-21 23:29:05,101 | INFO     | sum of deviations: 47575468310.0
[2024-06-22 01:29:21] 2024-06-21 23:29:05,101 | INFO     | mean x: 1719004745.5
[2024-06-22 01:29:21] 2024-06-21 23:29:05,101 | INFO     | mean y: 2331252.625
[2024-06-22 01:29:21] 2024-06-21 23:29:05,101 | INFO     | -- intersect: -15718244748.413624
[2024-06-22 01:29:21] 2024-06-21 23:29:05,101 | INFO     | intersect: -15718244748.413624
[2024-06-22 01:29:21] 2024-06-21 23:29:05,101 | INFO     | chi2: 2.3863854645173728
[2024-06-22 01:29:21] 2024-06-21 23:29:05,101 | INFO     | current chi2=2.3863854645173728 (change=51.07946054550393 %)
[2024-06-22 01:29:21] 2024-06-21 23:29:05,101 | INFO     | model: linear, x: [1718997273.0, 1718997334.0, 1718997395.0, 1718997456.0, 1718997517.0, 1718997578.0, 1718997639.0, 1718997700.0, 1718997761.0, 1718997822.0, 1718
[2024-06-22 01:29:21] 2024-06-21 23:29:05,101 | INFO     | sum of square deviations: 4903347750.0
[2024-06-22 01:29:21] 2024-06-21 23:29:05,102 | INFO     | sum of deviations: -1931504976.0000038
[2024-06-22 01:29:21] 2024-06-21 23:29:05,102 | INFO     | mean x: 1719004898.0
[2024-06-22 01:29:21] 2024-06-21 23:29:05,103 | INFO     | mean y: 2356512.003984064
[2024-06-22 01:29:21] 2024-06-21 23:29:05,103 | INFO     | -- intersect: 679499289.4574859
[2024-06-22 01:29:21] 2024-06-21 23:29:05,103 | INFO     | intersect: 679499289.4574859
[2024-06-22 01:29:21] 2024-06-21 23:29:05,103 | INFO     | chi2: 0.9004935493726581
[2024-06-22 01:29:21] 2024-06-21 23:29:05,103 | INFO     | current chi2=0.9004935493726581 (change=62.26537737671079 %)
[2024-06-22 01:29:21] 2024-06-21 23:29:05,103 | INFO     | model: linear, x: [1718997578.0, 1718997639.0, 1718997700.0, 1718997761.0, 1718997822.0, 1718997883.0, 1718997944.0, 1718998005.0, 1718998066.0, 1718998127.0, 1718
[2024-06-22 01:29:21] 2024-06-21 23:29:05,103 | INFO     | sum of square deviations: 4616114457.5
[2024-06-22 01:29:21] 2024-06-21 23:29:05,104 | INFO     | sum of deviations: -9170545044.0
[2024-06-22 01:29:21] 2024-06-21 23:29:05,104 | INFO     | mean x: 1719005050.5
[2024-06-22 01:29:21] 2024-06-21 23:29:05,104 | INFO     | mean y: 2360310.7560975607
[2024-06-22 01:29:21] 2024-06-21 23:29:05,104 | INFO     | -- intersect: 3417399818.899348
[2024-06-22 01:29:21] 2024-06-21 23:29:05,104 | INFO     | intersect: 3417399818.899348
[2024-06-22 01:29:21] 2024-06-21 23:29:05,104 | INFO     | chi2: 0.8259950582460232
[2024-06-22 01:29:21] 2024-06-21 23:29:05,105 | INFO     | current chi2=0.8259950582460232 (change=8.273073269490428 %)
[2024-06-22 01:29:21] 2024-06-21 23:29:05,105 | INFO     | left removable region: 30
[2024-06-22 01:29:21] 2024-06-21 23:29:05,105 | INFO     | model: linear, x: [1718998493.0, 1718998554.0, 1718998615.0, 1718998676.0, 1718998737.0, 1718998798.0, 1718998859.0, 1718998920.0, 1718998981.0, 1718999042.0, 1718
[2024-06-22 01:29:21] 2024-06-21 23:29:05,105 | INFO     | sum of square deviations: 3531973200.0
[2024-06-22 01:29:21] 2024-06-21 23:29:05,106 | INFO     | sum of deviations: 5467869017.000001
[2024-06-22 01:29:21] 2024-06-21 23:29:05,106 | INFO     | mean x: 1719005325.0
[2024-06-22 01:29:21] 2024-06-21 23:29:05,106 | INFO     | mean y: 2369362.742222222
[2024-06-22 01:29:21] 2024-06-21 23:29:05,106 | INFO     | -- intersect: -2658833150.5230303
[2024-06-22 01:29:21] 2024-06-21 23:29:05,106 | INFO     | intersect: -2658833150.5230303
[2024-06-22 01:29:21] 2024-06-21 23:29:05,106 | INFO     | chi2: 0.00041223758759116147
[2024-06-22 01:29:21] 2024-06-21 23:29:05,106 | INFO     | -- intersect: -2658833150.5230303
[2024-06-22 01:29:21] 2024-06-21 23:29:05,106 | INFO     | current memory leak: 1.55 B/s (using 225 data points, chi2=0.00)
[2024-06-22 01:29:21] 2024-06-21 23:29:05,107 | INFO     | ..............................
[2024-06-22 01:29:21] 2024-06-21 23:29:05,107 | INFO     | . Timing measurements:
[2024-06-22 01:29:21] 2024-06-21 23:29:05,107 | INFO     | . get job = 0 s
[2024-06-22 01:29:21] 2024-06-21 23:29:05,107 | INFO     | . initial setup = 1 s
[2024-06-22 01:29:21] 2024-06-21 23:29:05,107 | INFO     | . payload setup = 5 s
[2024-06-22 01:29:21] 2024-06-21 23:29:05,107 | INFO     | . stage-in = 0 s
[2024-06-22 01:29:21] 2024-06-21 23:29:05,107 | INFO     | . payload execution = 15877 s
[2024-06-22 01:29:21] 2024-06-21 23:29:05,107 | INFO     | . stage-out = 0 s
[2024-06-22 01:29:21] 2024-06-21 23:29:05,107 | INFO     | . log creation = 0 s
[2024-06-22 01:29:21] 2024-06-21 23:29:05,107 | INFO     | ..............................
[2024-06-22 01:29:21] 2024-06-21 23:29:05,176 | INFO     | 
[2024-06-22 01:29:21] 2024-06-21 23:29:05,177 | INFO     | job summary report
[2024-06-22 01:29:21] 2024-06-21 23:29:05,177 | INFO     | --------------------------------------------------
[2024-06-22 01:29:21] 2024-06-21 23:29:05,177 | INFO     | PanDA job id: 6238851662
[2024-06-22 01:29:21] 2024-06-21 23:29:05,177 | INFO     | task id: 40024040
[2024-06-22 01:29:21] 2024-06-21 23:29:05,177 | INFO     | errors: (none)
[2024-06-22 01:29:21] 2024-06-21 23:29:05,177 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-22 01:29:21] 2024-06-21 23:29:05,177 | INFO     | pilot state: finished 
[2024-06-22 01:29:21] 2024-06-21 23:29:05,177 | INFO     | transexitcode: 0
[2024-06-22 01:29:21] 2024-06-21 23:29:05,177 | INFO     | exeerrorcode: 0
[2024-06-22 01:29:21] 2024-06-21 23:29:05,177 | INFO     | exeerrordiag: 
[2024-06-22 01:29:21] 2024-06-21 23:29:05,177 | INFO     | exitcode: 0
[2024-06-22 01:29:21] 2024-06-21 23:29:05,177 | INFO     | exitmsg: OK
[2024-06-22 01:29:21] 2024-06-21 23:29:05,177 | INFO     | cpuconsumptiontime: 60228 s
[2024-06-22 01:29:21] 2024-06-21 23:29:05,178 | INFO     | nevents: 400
[2024-06-22 01:29:21] 2024-06-21 23:29:05,178 | INFO     | neventsw: 0
[2024-06-22 01:29:21] 2024-06-21 23:29:05,178 | INFO     | pid: 102767
[2024-06-22 01:29:21] 2024-06-21 23:29:05,178 | INFO     | pgrp: 102767
[2024-06-22 01:29:21] 2024-06-21 23:29:05,178 | INFO     | corecount: 4
[2024-06-22 01:29:21] 2024-06-21 23:29:05,178 | INFO     | event service: False
[2024-06-22 01:29:21] 2024-06-21 23:29:05,178 | INFO     | sizes: {0: 2386704, 1: 2386903, 5: 2387109, 11: 2387165, 15886: 2418373, 15887: 2427355, 15888: 2427539, 15893: 2427709}
[2024-06-22 01:29:21] 2024-06-21 23:29:05,178 | INFO     | --------------------------------------------------
[2024-06-22 01:29:21] 2024-06-21 23:29:05,178 | INFO     | 
[2024-06-22 01:29:21] 2024-06-21 23:29:05,178 | INFO     | executing command: ls -lF /scratch/boinc/var/slot64/slots/0
[2024-06-22 01:29:21] 2024-06-21 23:29:05,230 | WARNING  | process 102767 is no longer using CPU - aborting
[2024-06-22 01:29:21] 2024-06-21 23:29:05,231 | INFO     | aborting job monitoring since job object (job id=6238851662) has expired
[2024-06-22 01:29:21] 2024-06-21 23:29:05,248 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-22 01:29:21] 2024-06-21 23:29:05,249 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-22 01:29:21] 2024-06-21 23:29:05,249 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-22 01:29:21] 2024-06-21 23:29:05,249 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-22 01:29:21] 2024-06-21 23:29:05,249 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-22 01:29:21] 2024-06-21 23:29:05,249 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-22 01:29:21] 2024-06-21 23:29:05,249 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-22 01:29:21] 2024-06-21 23:29:05,249 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-22 01:29:21] 2024-06-21 23:29:05,249 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-22 01:29:21] 2024-06-21 23:29:05,249 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-22 01:29:21] 2024-06-21 23:29:05,249 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-22 01:29:21] 2024-06-21 23:29:05,249 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-22 01:29:21] 2024-06-21 23:29:05,249 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-22 01:29:21] 2024-06-21 23:29:05,249 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-22 01:29:21] 2024-06-21 23:29:05,249 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-22 01:29:21] 2024-06-21 23:29:05,249 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-22 01:29:21] 2024-06-21 23:29:05,249 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-22 01:29:21] 2024-06-21 23:29:05,249 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-22 01:29:21] 2024-06-21 23:29:05,249 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-22 01:29:21] 2024-06-21 23:29:05,249 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-22 01:29:21] 2024-06-21 23:29:05,249 | INFO     | job 6238851662 has completed (purged errors)
[2024-06-22 01:29:21] 2024-06-21 23:29:05,250 | INFO     | overall cleanup function is called
[2024-06-22 01:29:21] 2024-06-21 23:29:06,257 | INFO     | --- collectZombieJob: --- 10, [102767]
[2024-06-22 01:29:21] 2024-06-21 23:29:06,257 | INFO     | zombie collector waiting for pid 102767
[2024-06-22 01:29:21] 2024-06-21 23:29:06,257 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-22 01:29:21] 2024-06-21 23:29:07,262 | INFO     | collected zombie processes
[2024-06-22 01:29:21] 2024-06-21 23:29:07,262 | INFO     | will now attempt to kill all subprocesses of pid=102767
[2024-06-22 01:29:21] 2024-06-21 23:29:07,418 | INFO     | process IDs to be killed: [102767] (in reverse order)
[2024-06-22 01:29:21] 2024-06-21 23:29:07,511 | WARNING  | found no corresponding commands to process id(s)
[2024-06-22 01:29:21] 2024-06-21 23:29:07,511 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-22 01:29:21] 2024-06-21 23:29:07,518 | INFO     | did not find any defunct processes belonging to 102767
[2024-06-22 01:29:21] 2024-06-21 23:29:07,523 | INFO     | did not find any defunct processes belonging to 102767
[2024-06-22 01:29:21] 2024-06-21 23:29:07,524 | INFO     | ready for new job
[2024-06-22 01:29:21] 2024-06-21 23:29:07,524 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-22 01:29:21] 2024-06-21 23:29:07,525 | INFO     | *************************************
[2024-06-22 01:29:21] 2024-06-21 23:29:07,525 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-22 01:29:21] 2024-06-21 23:29:07,526 | INFO     | *************************************
[2024-06-22 01:29:21] 2024-06-21 23:29:07,526 | INFO     | 
[2024-06-22 01:29:21] 2024-06-21 23:29:07,528 | INFO     | architecture information:
[2024-06-22 01:29:21] 2024-06-21 23:29:07,529 | INFO     | executing command: cat /etc/os-release
[2024-06-22 01:29:21] 2024-06-21 23:29:07,544 | INFO     | cat /etc/os-release:
[2024-06-22 01:29:21] NAME="CentOS Linux"
[2024-06-22 01:29:21] VERSION="7 (Core)"
[2024-06-22 01:29:21] ID="centos"
[2024-06-22 01:29:21] ID_LIKE="rhel fedora"
[2024-06-22 01:29:21] VERSION_ID="7"
[2024-06-22 01:29:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-22 01:29:21] ANSI_COLOR="0;31"
[2024-06-22 01:29:21] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-22 01:29:21] HOME_URL="https://www.centos.org/"
[2024-06-22 01:29:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-22 01:29:21] 
[2024-06-22 01:29:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-22 01:29:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-22 01:29:21] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-22 01:29:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-22 01:29:21] 
[2024-06-22 01:29:21] 2024-06-21 23:29:07,544 | INFO     | *************************************
[2024-06-22 01:29:21] 2024-06-21 23:29:08,047 | INFO     | executing command: df -mP /scratch/boinc/var/slot64/slots/0
[2024-06-22 01:29:21] 2024-06-21 23:29:08,067 | INFO     | sufficient remaining disk space (652149260288 B)
[2024-06-22 01:29:21] 2024-06-21 23:29:08,067 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-22 01:29:21] 2024-06-21 23:29:08,067 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-22 01:29:21] 2024-06-21 23:29:08,068 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-22 01:29:21] 2024-06-21 23:29:08,135 | INFO     | all job control threads have been joined
[2024-06-22 01:29:21] 2024-06-21 23:29:08,598 | INFO     | all payload control threads have been joined
[2024-06-22 01:29:21] 2024-06-21 23:29:08,739 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-22 01:29:21] 2024-06-21 23:29:08,739 | INFO     | aborting loop
[2024-06-22 01:29:21] 2024-06-21 23:29:08,741 | INFO     | all data control threads have been joined
[2024-06-22 01:29:21] 2024-06-21 23:29:08,870 | INFO     | found 0 job(s) in 20 queues
[2024-06-22 01:29:21] 2024-06-21 23:29:08,870 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-22 01:29:21] 2024-06-21 23:29:08,870 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-22 01:29:21] 2024-06-21 23:29:09,073 | INFO     | [job] retrieve thread has finished
[2024-06-22 01:29:21] 2024-06-21 23:29:09,140 | INFO     | [job] control thread has finished
[2024-06-22 01:29:21] 2024-06-21 23:29:09,264 | INFO     | [payload] validate_post thread has finished
[2024-06-22 01:29:21] 2024-06-21 23:29:09,378 | INFO     | [job] create_data_payload thread has finished
[2024-06-22 01:29:21] 2024-06-21 23:29:09,383 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-22 01:29:21] 2024-06-21 23:29:09,603 | INFO     | [payload] control thread has finished
[2024-06-22 01:29:21] 2024-06-21 23:29:09,685 | INFO     | [payload] validate_pre thread has finished
[2024-06-22 01:29:21] 2024-06-21 23:29:09,744 | INFO     | [job] job monitor thread has finished
[2024-06-22 01:29:21] 2024-06-21 23:29:09,746 | INFO     | [data] control thread has finished
[2024-06-22 01:29:21] 2024-06-21 23:29:10,063 | INFO     | [payload] failed_post thread has finished
[2024-06-22 01:29:21] 2024-06-21 23:29:10,070 | INFO     | [data] copytool_out thread has finished
[2024-06-22 01:29:21] 2024-06-21 23:29:10,075 | INFO     | [payload] execute_payloads thread has finished
[2024-06-22 01:29:21] 2024-06-21 23:29:10,172 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-22 01:29:21] 2024-06-21 23:29:10,249 | INFO     | [data] copytool_in thread has finished
[2024-06-22 01:29:21] 2024-06-21 23:29:10,275 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-22 01:29:21] 2024-06-21 23:29:10,325 | INFO     | [job] validate thread has finished
[2024-06-22 01:29:21] 2024-06-21 23:29:11,177 | INFO     | [job] queue monitor thread has finished
[2024-06-22 01:29:21] 2024-06-21 23:29:14,280 | INFO     | [data] queue_monitor thread has finished
[2024-06-22 01:29:21] 2024-06-21 23:29:15,126 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47486347334720)>', '<ExcThread(monitor, started 47486536013568)>']
[2024-06-22 01:29:21] 2024-06-21 23:29:15,904 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-22 01:29:21] 2024-06-21 23:29:15,904 | INFO     | [monitor] control thread has ended
[2024-06-22 01:29:21] 2024-06-21 23:29:20,135 | INFO     | all workflow threads have been joined
[2024-06-22 01:29:21] 2024-06-21 23:29:20,136 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-22 01:29:21] 2024-06-21 23:29:20,136 | INFO     | traces error code: 0
[2024-06-22 01:29:21] 2024-06-21 23:29:20,136 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-22 01:29:21] 2024-06-21 23:29:20,250 [wrapper] ==== pilot stdout END ====
[2024-06-22 01:29:21] 2024-06-21 23:29:20,252 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-22 01:29:21] 2024-06-21 23:29:20,255 [wrapper] pilotpid: 95608
[2024-06-22 01:29:21] 2024-06-21 23:29:20,258 [wrapper] Pilot exit status: 0
[2024-06-22 01:29:21] 2024-06-21 23:29:20,270 [wrapper] pandaids: 6238851662
[2024-06-22 01:29:21] 2024-06-21 23:29:20,337 [wrapper] cleanup supervisor_pilot  636024 95609
[2024-06-22 01:29:21] 2024-06-21 23:29:20,339 [wrapper] Test setup, not cleaning
[2024-06-22 01:29:21] 2024-06-21 23:29:20,341 [wrapper] ==== wrapper stdout END ====
[2024-06-22 01:29:21] 2024-06-21 23:29:20,343 [wrapper] ==== wrapper stderr END ====
[2024-06-22 01:29:21] 2024-06-21 23:29:20,348 [wrapper] apfmon messages muted
[2024-06-22 01:29:21]  *** Error codes and diagnostics ***
[2024-06-22 01:29:21]     "exeErrorCode": 0,
[2024-06-22 01:29:21]     "exeErrorDiag": "",
[2024-06-22 01:29:21]     "pilotErrorCode": 0,
[2024-06-22 01:29:21]     "pilotErrorDiag": "",
[2024-06-22 01:29:21]  *** Listing of results directory ***
[2024-06-22 01:29:21] total 869628
[2024-06-22 01:29:21] -rw-r--r-- 1 boinc boinc    469766 Jun 20 15:44 pilot3.tar.gz
[2024-06-22 01:29:21] -rwx------ 1 boinc boinc     32308 Jun 20 15:47 runpilot2-wrapper.sh
[2024-06-22 01:29:21] -rw-r--r-- 1 boinc boinc      5654 Jun 20 15:47 queuedata.json
[2024-06-22 01:29:21] -rw-r--r-- 1 boinc boinc       100 Jun 21 21:03 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-22 01:29:21] -rwxr-xr-x 1 boinc boinc      7986 Jun 21 21:03 run_atlas
[2024-06-22 01:29:21] -rw-r--r-- 1 boinc boinc       105 Jun 21 21:03 job.xml
[2024-06-22 01:29:21] -rw-r--r-- 1 boinc boinc      6661 Jun 21 21:03 init_data.xml
[2024-06-22 01:29:21] -rw-r--r-- 2 boinc boinc 610399117 Jun 21 21:03 EVNT.40024038._000048.pool.root.1
[2024-06-22 01:29:21] -rw-r--r-- 2 boinc boinc     17537 Jun 21 21:03 start_atlas.sh
[2024-06-22 01:29:21] drwxrwx--x 2 boinc boinc      4096 Jun 21 21:03 shared
[2024-06-22 01:29:21] -rw-r--r-- 2 boinc boinc    482470 Jun 21 21:03 input.tar.gz
[2024-06-22 01:29:21] -rw-r--r-- 1 boinc boinc         0 Jun 21 21:03 boinc_lockfile
[2024-06-22 01:29:21] -rw-r--r-- 1 boinc boinc      2489 Jun 21 21:03 pandaJob.out
[2024-06-22 01:29:21] -rw------- 1 boinc boinc       424 Jun 21 21:03 setup.sh.local
[2024-06-22 01:29:21] -rw------- 1 boinc boinc   1025648 Jun 21 21:03 agis_schedconf.cvmfs.json
[2024-06-22 01:29:21] -rw------- 1 boinc boinc   1321363 Jun 21 21:03 cric_ddmendpoints.json
[2024-06-22 01:29:21] drwx------ 4 boinc boinc      4096 Jun 21 21:03 pilot3
[2024-06-22 01:29:21] -rw------- 1 boinc boinc 272559702 Jun 22 01:28 HITS.40024040._000689.pool.root.1
[2024-06-22 01:29:21] -rw-r--r-- 1 boinc boinc       532 Jun 22 01:28 boinc_task_state.xml
[2024-06-22 01:29:21] -rw------- 1 boinc boinc        95 Jun 22 01:28 pilot_heartbeat.json
[2024-06-22 01:29:21] -rw------- 1 boinc boinc      1047 Jun 22 01:28 memory_monitor_summary.json
[2024-06-22 01:29:21] -rw------- 1 boinc boinc         0 Jun 22 01:28 agis_ddmendpoints.agis.ALL.json
[2024-06-22 01:29:21] -rw------- 1 boinc boinc    356798 Jun 22 01:28 log.40024040._000689.job.log.tgz.1
[2024-06-22 01:29:21] -rw------- 1 boinc boinc      7761 Jun 22 01:29 heartbeat.json
[2024-06-22 01:29:21] -rw-r--r-- 1 boinc boinc        28 Jun 22 01:29 wrapper_checkpoint.txt
[2024-06-22 01:29:21] -rw-r--r-- 1 boinc boinc      8192 Jun 22 01:29 boinc_mmap_file
[2024-06-22 01:29:21] -rw------- 1 boinc boinc      4221 Jun 22 01:29 pilotlog.txt
[2024-06-22 01:29:21] -rw------- 1 boinc boinc   1643133 Jun 22 01:29 log.40024040._000689.job.log.1
[2024-06-22 01:29:21] -rw------- 1 boinc boinc       357 Jun 22 01:29 output.list
[2024-06-22 01:29:21] -rw-r--r-- 1 boinc boinc       620 Jun 22 01:29 runtime_log
[2024-06-22 01:29:21] -rw------- 1 boinc boinc   2017280 Jun 22 01:29 result.tar.gz
[2024-06-22 01:29:21] -rw-r--r-- 1 boinc boinc     11410 Jun 22 01:29 runtime_log.err
[2024-06-22 01:29:21] -rw------- 1 boinc boinc       658 Jun 22 01:29 onLNDmTJXe5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmfDlKDmkbhTnn.diag
[2024-06-22 01:29:21] -rw-r--r-- 1 boinc boinc     21300 Jun 22 01:29 stderr.txt
[2024-06-22 01:29:21] HITS file was successfully produced:
[2024-06-22 01:29:21] -rw------- 1 boinc boinc 272559702 Jun 22 01:28 shared/HITS.pool.root.1
[2024-06-22 01:29:21]  *** Contents of shared directory: ***
[2024-06-22 01:29:21] total 864740
[2024-06-22 01:29:21] -rw-r--r-- 2 boinc boinc 610399117 Jun 21 21:03 ATLAS.root_0
[2024-06-22 01:29:21] -rw-r--r-- 2 boinc boinc     17537 Jun 21 21:03 start_atlas.sh
[2024-06-22 01:29:21] -rw-r--r-- 2 boinc boinc    482470 Jun 21 21:03 input.tar.gz
[2024-06-22 01:29:21] -rw------- 1 boinc boinc 272559702 Jun 22 01:28 HITS.pool.root.1
[2024-06-22 01:29:21] -rw------- 1 boinc boinc   2017280 Jun 22 01:29 result.tar.gz
01:29:23 (91227): run_atlas exited; CPU time 59944.413189
01:29:23 (91227): called boinc_finish(0)

</stderr_txt>
]]>

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