Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:47:38 (1434416): wrapper (7.7.26015): starting
05:47:38 (1434416): wrapper: running run_atlas (--nthreads 4)
[2024-06-21 05:47:38] Arguments: --nthreads 4
[2024-06-21 05:47:38] Threads: 4
[2024-06-21 05:47:38] Checking for CVMFS
[2024-06-21 05:47:38] No cvmfs_config command found, will try listing directly
[2024-06-21 05:47:38] CVMFS is ok
[2024-06-21 05:47:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-21 05:47:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-21 05:47:38] Further information can be found at the LHC@home message board.
[2024-06-21 05:47:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-21 05:47:38] Checking for apptainer binary...
[2024-06-21 05:47:38] which: no apptainer in ((null))
[2024-06-21 05:47:38] apptainer is not installed, using version from CVMFS
[2024-06-21 05:47:38] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-21 05:47:39] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot44/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut15.grid.cesnet.cz
[2024-06-21 05:47:39] apptainer works
[2024-06-21 05:47:39] Set ATHENA_PROC_NUMBER=4
[2024-06-21 05:47:39] Set ATHENA_CORE_NUMBER=4
[2024-06-21 05:47:39] Starting ATLAS job with PandaID=6239493975
[2024-06-21 05:47:39] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot44/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-21 08:41:59]  *** The last 200 lines of the pilot log: ***
[2024-06-21 08:41:59] 2024-06-21 06:41:36,355 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-06-21 08:41:59] 2024-06-21 06:41:36,355 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-06-21 08:41:59] 2024-06-21 06:41:36,358 | INFO     | fitting pss+swap vs Time
[2024-06-21 08:41:59] 2024-06-21 06:41:36,358 | INFO     | model: linear, x: [1718941710.0, 1718941771.0, 1718941832.0, 1718941893.0, 1718941954.0, 1718942015.0, 1718942076.0, 1718942137.0, 1718942198.0, 1718942259.0, 1718
[2024-06-21 08:41:59] 2024-06-21 06:41:36,358 | INFO     | sum of square deviations: 1550429070.0
[2024-06-21 08:41:59] 2024-06-21 06:41:36,359 | INFO     | sum of deviations: 68342890372.000015
[2024-06-21 08:41:59] 2024-06-21 06:41:36,359 | INFO     | mean x: 1718946895.0
[2024-06-21 08:41:59] 2024-06-21 06:41:36,359 | INFO     | mean y: 2252292.8596491227
[2024-06-21 08:41:59] 2024-06-21 06:41:36,359 | INFO     | -- intersect: -75768901301.59328
[2024-06-21 08:41:59] 2024-06-21 06:41:36,359 | INFO     | intersect: -75768901301.59328
[2024-06-21 08:41:59] 2024-06-21 06:41:36,359 | INFO     | chi2: 5.044890254360298
[2024-06-21 08:41:59] 2024-06-21 06:41:36,360 | INFO     | model: linear, x: [1718941710.0, 1718941771.0, 1718941832.0, 1718941893.0, 1718941954.0, 1718942015.0, 1718942076.0, 1718942137.0, 1718942198.0, 1718942259.0, 1718
[2024-06-21 08:41:59] 2024-06-21 06:41:36,360 | INFO     | sum of square deviations: 1418361477.5
[2024-06-21 08:41:59] 2024-06-21 06:41:36,361 | INFO     | sum of deviations: 76867128978.49988
[2024-06-21 08:41:59] 2024-06-21 06:41:36,361 | INFO     | mean x: 1718946742.5
[2024-06-21 08:41:59] 2024-06-21 06:41:36,361 | INFO     | mean y: 2261835.487951807
[2024-06-21 08:41:59] 2024-06-21 06:41:36,361 | INFO     | -- intersect: -93154879738.75487
[2024-06-21 08:41:59] 2024-06-21 06:41:36,361 | INFO     | intersect: -93154879738.75487
[2024-06-21 08:41:59] 2024-06-21 06:41:36,361 | INFO     | chi2: 4.245420377835541
[2024-06-21 08:41:59] 2024-06-21 06:41:36,361 | INFO     | current chi2=4.245420377835541 (change=15.84712126956132 %)
[2024-06-21 08:41:59] 2024-06-21 06:41:36,361 | INFO     | right removable region: 165
[2024-06-21 08:41:59] 2024-06-21 06:41:36,361 | INFO     | model: linear, x: [1718942015.0, 1718942076.0, 1718942137.0, 1718942198.0, 1718942259.0, 1718942320.0, 1718942381.0, 1718942442.0, 1718942503.0, 1718942564.0, 1718
[2024-06-21 08:41:59] 2024-06-21 06:41:36,362 | INFO     | sum of square deviations: 1418361477.5
[2024-06-21 08:41:59] 2024-06-21 06:41:36,362 | INFO     | sum of deviations: 28569788498.5
[2024-06-21 08:41:59] 2024-06-21 06:41:36,362 | INFO     | mean x: 1718947047.5
[2024-06-21 08:41:59] 2024-06-21 06:41:36,363 | INFO     | mean y: 2298072.0542168673
[2024-06-21 08:41:59] 2024-06-21 06:41:36,363 | INFO     | -- intersect: -34622129033.620636
[2024-06-21 08:41:59] 2024-06-21 06:41:36,363 | INFO     | intersect: -34622129033.620636
[2024-06-21 08:41:59] 2024-06-21 06:41:36,363 | INFO     | chi2: 2.4607425904620217
[2024-06-21 08:41:59] 2024-06-21 06:41:36,363 | INFO     | current chi2=2.4607425904620217 (change=51.22306995013018 %)
[2024-06-21 08:41:59] 2024-06-21 06:41:36,363 | INFO     | model: linear, x: [1718942320.0, 1718942381.0, 1718942442.0, 1718942503.0, 1718942564.0, 1718942625.0, 1718942686.0, 1718942747.0, 1718942808.0, 1718942869.0, 1718
[2024-06-21 08:41:59] 2024-06-21 06:41:36,363 | INFO     | sum of square deviations: 1294014960.0
[2024-06-21 08:41:59] 2024-06-21 06:41:36,364 | INFO     | sum of deviations: -3534730278.0
[2024-06-21 08:41:59] 2024-06-21 06:41:36,364 | INFO     | mean x: 1718947200.0
[2024-06-21 08:41:59] 2024-06-21 06:41:36,364 | INFO     | mean y: 2337453.8198757763
[2024-06-21 08:41:59] 2024-06-21 06:41:36,364 | INFO     | -- intersect: 4697812314.5767565
[2024-06-21 08:41:59] 2024-06-21 06:41:36,364 | INFO     | intersect: 4697812314.5767565
[2024-06-21 08:41:59] 2024-06-21 06:41:36,365 | INFO     | chi2: 0.9192734024000478
[2024-06-21 08:41:59] 2024-06-21 06:41:36,365 | INFO     | current chi2=0.9192734024000478 (change=62.64243948297542 %)
[2024-06-21 08:41:59] 2024-06-21 06:41:36,365 | INFO     | model: linear, x: [1718942625.0, 1718942686.0, 1718942747.0, 1718942808.0, 1718942869.0, 1718942930.0, 1718942991.0, 1718943052.0, 1718943113.0, 1718943174.0, 1718
[2024-06-21 08:41:59] 2024-06-21 06:41:36,365 | INFO     | sum of square deviations: 1177156955.0
[2024-06-21 08:41:59] 2024-06-21 06:41:36,366 | INFO     | sum of deviations: -7782858849.999999
[2024-06-21 08:41:59] 2024-06-21 06:41:36,366 | INFO     | mean x: 1718947352.5
[2024-06-21 08:41:59] 2024-06-21 06:41:36,366 | INFO     | mean y: 2342889.2564102565
[2024-06-21 08:41:59] 2024-06-21 06:41:36,366 | INFO     | -- intersect: 11367288369.350603
[2024-06-21 08:41:59] 2024-06-21 06:41:36,366 | INFO     | intersect: 11367288369.350603
[2024-06-21 08:41:59] 2024-06-21 06:41:36,366 | INFO     | chi2: 0.8450355438200317
[2024-06-21 08:41:59] 2024-06-21 06:41:36,366 | INFO     | current chi2=0.8450355438200317 (change=8.075710488979151 %)
[2024-06-21 08:41:59] 2024-06-21 06:41:36,366 | INFO     | left removable region: 30
[2024-06-21 08:41:59] 2024-06-21 06:41:36,367 | INFO     | model: linear, x: [1718943540.0, 1718943601.0, 1718943662.0, 1718943723.0, 1718943784.0, 1718943845.0, 1718943906.0, 1718943967.0, 1718944028.0, 1718944089.0, 1718
[2024-06-21 08:41:59] 2024-06-21 06:41:36,367 | INFO     | sum of square deviations: 762879420.0
[2024-06-21 08:41:59] 2024-06-21 06:41:36,367 | INFO     | sum of deviations: 2032037673.0
[2024-06-21 08:41:59] 2024-06-21 06:41:36,367 | INFO     | mean x: 1718947627.0
[2024-06-21 08:41:59] 2024-06-21 06:41:36,367 | INFO     | mean y: 2356456.940740741
[2024-06-21 08:41:59] 2024-06-21 06:41:36,367 | INFO     | -- intersect: -4576304658.308577
[2024-06-21 08:41:59] 2024-06-21 06:41:36,368 | INFO     | intersect: -4576304658.308577
[2024-06-21 08:41:59] 2024-06-21 06:41:36,368 | INFO     | chi2: 6.551953711334419e-05
[2024-06-21 08:41:59] 2024-06-21 06:41:36,368 | INFO     | -- intersect: -4576304658.308577
[2024-06-21 08:41:59] 2024-06-21 06:41:36,368 | INFO     | current memory leak: 2.66 B/s (using 135 data points, chi2=0.00)
[2024-06-21 08:41:59] 2024-06-21 06:41:36,368 | INFO     | ..............................
[2024-06-21 08:41:59] 2024-06-21 06:41:36,368 | INFO     | . Timing measurements:
[2024-06-21 08:41:59] 2024-06-21 06:41:36,368 | INFO     | . get job = 0 s
[2024-06-21 08:41:59] 2024-06-21 06:41:36,368 | INFO     | . initial setup = 1 s
[2024-06-21 08:41:59] 2024-06-21 06:41:36,369 | INFO     | . payload setup = 9 s
[2024-06-21 08:41:59] 2024-06-21 06:41:36,369 | INFO     | . stage-in = 0 s
[2024-06-21 08:41:59] 2024-06-21 06:41:36,369 | INFO     | . payload execution = 10384 s
[2024-06-21 08:41:59] 2024-06-21 06:41:36,369 | INFO     | . stage-out = 0 s
[2024-06-21 08:41:59] 2024-06-21 06:41:36,369 | INFO     | . log creation = 0 s
[2024-06-21 08:41:59] 2024-06-21 06:41:36,369 | INFO     | ..............................
[2024-06-21 08:41:59] 2024-06-21 06:41:36,791 | INFO     | 
[2024-06-21 08:41:59] 2024-06-21 06:41:36,791 | INFO     | job summary report
[2024-06-21 08:41:59] 2024-06-21 06:41:36,791 | INFO     | --------------------------------------------------
[2024-06-21 08:41:59] 2024-06-21 06:41:36,791 | INFO     | PanDA job id: 6239493975
[2024-06-21 08:41:59] 2024-06-21 06:41:36,791 | INFO     | task id: 38776104
[2024-06-21 08:41:59] 2024-06-21 06:41:36,792 | INFO     | errors: (none)
[2024-06-21 08:41:59] 2024-06-21 06:41:36,792 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-21 08:41:59] 2024-06-21 06:41:36,792 | INFO     | pilot state: finished 
[2024-06-21 08:41:59] 2024-06-21 06:41:36,792 | INFO     | transexitcode: 0
[2024-06-21 08:41:59] 2024-06-21 06:41:36,792 | INFO     | exeerrorcode: 0
[2024-06-21 08:41:59] 2024-06-21 06:41:36,792 | INFO     | exeerrordiag: 
[2024-06-21 08:41:59] 2024-06-21 06:41:36,792 | INFO     | exitcode: 0
[2024-06-21 08:41:59] 2024-06-21 06:41:36,792 | INFO     | exitmsg: OK
[2024-06-21 08:41:59] 2024-06-21 06:41:36,792 | INFO     | cpuconsumptiontime: 38654 s
[2024-06-21 08:41:59] 2024-06-21 06:41:36,792 | INFO     | nevents: 400
[2024-06-21 08:41:59] 2024-06-21 06:41:36,792 | INFO     | neventsw: 0
[2024-06-21 08:41:59] 2024-06-21 06:41:36,792 | INFO     | pid: 1446864
[2024-06-21 08:41:59] 2024-06-21 06:41:36,792 | INFO     | pgrp: 1446864
[2024-06-21 08:41:59] 2024-06-21 06:41:36,792 | INFO     | corecount: 4
[2024-06-21 08:41:59] 2024-06-21 06:41:36,792 | INFO     | event service: False
[2024-06-21 08:41:59] 2024-06-21 06:41:36,792 | INFO     | sizes: {0: 2387065, 7: 2387271, 11: 2387299, 10397: 2415962, 10398: 2425000, 10402: 2425114}
[2024-06-21 08:41:59] 2024-06-21 06:41:36,793 | INFO     | --------------------------------------------------
[2024-06-21 08:41:59] 2024-06-21 06:41:36,793 | INFO     | 
[2024-06-21 08:41:59] 2024-06-21 06:41:36,793 | INFO     | executing command: ls -lF /scratch/boinc/var/slot44/slots/1
[2024-06-21 08:41:59] 2024-06-21 06:41:36,811 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-21 08:41:59] 2024-06-21 06:41:36,812 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-21 08:41:59] 2024-06-21 06:41:36,812 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-21 08:41:59] 2024-06-21 06:41:36,812 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-21 08:41:59] 2024-06-21 06:41:36,812 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-21 08:41:59] 2024-06-21 06:41:36,812 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-21 08:41:59] 2024-06-21 06:41:36,812 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-21 08:41:59] 2024-06-21 06:41:36,812 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-21 08:41:59] 2024-06-21 06:41:36,812 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-21 08:41:59] 2024-06-21 06:41:36,812 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-21 08:41:59] 2024-06-21 06:41:36,812 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-21 08:41:59] 2024-06-21 06:41:36,812 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-21 08:41:59] 2024-06-21 06:41:36,812 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-21 08:41:59] 2024-06-21 06:41:36,813 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-21 08:41:59] 2024-06-21 06:41:36,813 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-21 08:41:59] 2024-06-21 06:41:36,813 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-21 08:41:59] 2024-06-21 06:41:36,813 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-21 08:41:59] 2024-06-21 06:41:36,813 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-21 08:41:59] 2024-06-21 06:41:36,813 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-21 08:41:59] 2024-06-21 06:41:36,813 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-21 08:41:59] 2024-06-21 06:41:36,813 | INFO     | job 6239493975 has completed (purged errors)
[2024-06-21 08:41:59] 2024-06-21 06:41:36,813 | INFO     | overall cleanup function is called
[2024-06-21 08:41:59] 2024-06-21 06:41:37,820 | INFO     | --- collectZombieJob: --- 10, [1446864]
[2024-06-21 08:41:59] 2024-06-21 06:41:37,820 | INFO     | zombie collector waiting for pid 1446864
[2024-06-21 08:41:59] 2024-06-21 06:41:37,820 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-21 08:41:59] 2024-06-21 06:41:38,825 | INFO     | collected zombie processes
[2024-06-21 08:41:59] 2024-06-21 06:41:38,825 | INFO     | will now attempt to kill all subprocesses of pid=1446864
[2024-06-21 08:41:59] 2024-06-21 06:41:39,068 | INFO     | process IDs to be killed: [1446864] (in reverse order)
[2024-06-21 08:41:59] 2024-06-21 06:41:39,227 | WARNING  | found no corresponding commands to process id(s)
[2024-06-21 08:41:59] 2024-06-21 06:41:39,227 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-21 08:41:59] 2024-06-21 06:41:39,240 | INFO     | did not find any defunct processes belonging to 1446864
[2024-06-21 08:41:59] 2024-06-21 06:41:39,249 | INFO     | did not find any defunct processes belonging to 1446864
[2024-06-21 08:41:59] 2024-06-21 06:41:39,249 | INFO     | ready for new job
[2024-06-21 08:41:59] 2024-06-21 06:41:39,250 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-21 08:41:59] 2024-06-21 06:41:39,251 | INFO     | *************************************
[2024-06-21 08:41:59] 2024-06-21 06:41:39,251 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-21 08:41:59] 2024-06-21 06:41:39,251 | INFO     | *************************************
[2024-06-21 08:41:59] 2024-06-21 06:41:39,251 | INFO     | 
[2024-06-21 08:41:59] 2024-06-21 06:41:39,256 | INFO     | architecture information:
[2024-06-21 08:41:59] 2024-06-21 06:41:39,256 | INFO     | executing command: cat /etc/os-release
[2024-06-21 08:41:59] 2024-06-21 06:41:39,276 | INFO     | cat /etc/os-release:
[2024-06-21 08:41:59] NAME="CentOS Linux"
[2024-06-21 08:41:59] VERSION="7 (Core)"
[2024-06-21 08:41:59] ID="centos"
[2024-06-21 08:41:59] ID_LIKE="rhel fedora"
[2024-06-21 08:41:59] VERSION_ID="7"
[2024-06-21 08:41:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-21 08:41:59] ANSI_COLOR="0;31"
[2024-06-21 08:41:59] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-21 08:41:59] HOME_URL="https://www.centos.org/"
[2024-06-21 08:41:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-21 08:41:59] 
[2024-06-21 08:41:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-21 08:41:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-21 08:41:59] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-21 08:41:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-21 08:41:59] 
[2024-06-21 08:41:59] 2024-06-21 06:41:39,276 | INFO     | *************************************
[2024-06-21 08:41:59] 2024-06-21 06:41:39,778 | INFO     | executing command: df -mP /scratch/boinc/var/slot44/slots/1
[2024-06-21 08:41:59] 2024-06-21 06:41:39,799 | INFO     | sufficient remaining disk space (3179924160512 B)
[2024-06-21 08:41:59] 2024-06-21 06:41:39,799 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-21 08:41:59] 2024-06-21 06:41:39,799 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-21 08:41:59] 2024-06-21 06:41:39,876 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-21 08:41:59] 2024-06-21 06:41:40,014 | INFO     | found 0 job(s) in 20 queues
[2024-06-21 08:41:59] 2024-06-21 06:41:40,014 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-21 08:41:59] 2024-06-21 06:41:40,015 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-21 08:41:59] 2024-06-21 06:41:40,059 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-21 08:41:59] 2024-06-21 06:41:40,059 | INFO     | aborting loop
[2024-06-21 08:41:59] 2024-06-21 06:41:40,134 | INFO     | all payload control threads have been joined
[2024-06-21 08:41:59] 2024-06-21 06:41:40,593 | INFO     | all data control threads have been joined
[2024-06-21 08:41:59] 2024-06-21 06:41:40,804 | INFO     | [job] retrieve thread has finished
[2024-06-21 08:41:59] 2024-06-21 06:41:40,845 | INFO     | [payload] validate_pre thread has finished
[2024-06-21 08:41:59] 2024-06-21 06:41:40,853 | INFO     | [job] create_data_payload thread has finished
[2024-06-21 08:41:59] 2024-06-21 06:41:40,961 | INFO     | [payload] execute_payloads thread has finished
[2024-06-21 08:41:59] 2024-06-21 06:41:41,063 | INFO     | [job] job monitor thread has finished
[2024-06-21 08:41:59] 2024-06-21 06:41:41,139 | INFO     | [payload] control thread has finished
[2024-06-21 08:41:59] 2024-06-21 06:41:41,202 | INFO     | [payload] failed_post thread has finished
[2024-06-21 08:41:59] 2024-06-21 06:41:41,309 | INFO     | all job control threads have been joined
[2024-06-21 08:41:59] 2024-06-21 06:41:41,470 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-21 08:41:59] 2024-06-21 06:41:41,598 | INFO     | [data] control thread has finished
[2024-06-21 08:41:59] 2024-06-21 06:41:41,689 | INFO     | [payload] validate_post thread has finished
[2024-06-21 08:41:59] 2024-06-21 06:41:41,881 | INFO     | [data] copytool_out thread has finished
[2024-06-21 08:41:59] 2024-06-21 06:41:42,044 | INFO     | [job] validate thread has finished
[2024-06-21 08:41:59] 2024-06-21 06:41:42,153 | INFO     | [data] copytool_in thread has finished
[2024-06-21 08:41:59] 2024-06-21 06:41:42,314 | INFO     | [job] control thread has finished
[2024-06-21 08:41:59] 2024-06-21 06:41:42,467 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-21 08:41:59] 2024-06-21 06:41:42,475 | INFO     | [job] queue monitor thread has finished
[2024-06-21 08:41:59] 2024-06-21 06:41:46,472 | INFO     | [data] queue_monitor thread has finished
[2024-06-21 08:41:59] 2024-06-21 06:41:50,574 | INFO     | job.realtimelogging is not enabled
[2024-06-21 08:41:59] 2024-06-21 06:41:51,579 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-21 08:41:59] 2024-06-21 06:41:53,576 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 46933738087488)>', '<ExcThread(monitor, started 46934467286784)>']
[2024-06-21 08:41:59] 2024-06-21 06:41:54,078 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-21 08:41:59] 2024-06-21 06:41:54,078 | INFO     | [monitor] control thread has ended
[2024-06-21 08:41:59] 2024-06-21 06:41:58,601 | INFO     | all workflow threads have been joined
[2024-06-21 08:41:59] 2024-06-21 06:41:58,601 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-21 08:41:59] 2024-06-21 06:41:58,602 | INFO     | traces error code: 0
[2024-06-21 08:41:59] 2024-06-21 06:41:58,602 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-21 08:41:59] 2024-06-21 06:41:58,683 [wrapper] ==== pilot stdout END ====
[2024-06-21 08:41:59] 2024-06-21 06:41:58,685 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-21 08:41:59] 2024-06-21 06:41:58,687 [wrapper] pilotpid: 1439257
[2024-06-21 08:41:59] 2024-06-21 06:41:58,688 [wrapper] Pilot exit status: 0
[2024-06-21 08:41:59] 2024-06-21 06:41:58,700 [wrapper] pandaids: 6239493975
[2024-06-21 08:41:59] 2024-06-21 06:41:58,790 [wrapper] cleanup supervisor_pilot 2248576 1439258
[2024-06-21 08:41:59] 2024-06-21 06:41:58,792 [wrapper] Test setup, not cleaning
[2024-06-21 08:41:59] 2024-06-21 06:41:58,793 [wrapper] ==== wrapper stdout END ====
[2024-06-21 08:41:59] 2024-06-21 06:41:58,795 [wrapper] ==== wrapper stderr END ====
[2024-06-21 08:41:59] 2024-06-21 06:41:58,801 [wrapper] apfmon messages muted
[2024-06-21 08:41:59]  *** Error codes and diagnostics ***
[2024-06-21 08:41:59]     "exeErrorCode": 0,
[2024-06-21 08:41:59]     "exeErrorDiag": "",
[2024-06-21 08:41:59]     "pilotErrorCode": 0,
[2024-06-21 08:41:59]     "pilotErrorDiag": "",
[2024-06-21 08:41:59]  *** Listing of results directory ***
[2024-06-21 08:41:59] total 823056
[2024-06-21 08:41:59] -rw-r--r-- 1 boinc boinc    469766 Jun 20 14:56 pilot3.tar.gz
[2024-06-21 08:41:59] -rw-r--r-- 1 boinc boinc      5654 Jun 20 15:00 queuedata.json
[2024-06-21 08:41:59] -rwx------ 1 boinc boinc     32308 Jun 20 15:01 runpilot2-wrapper.sh
[2024-06-21 08:41:59] -rw-r--r-- 1 boinc boinc       100 Jun 21 05:47 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-21 08:41:59] -rwxr-xr-x 1 boinc boinc      7986 Jun 21 05:47 run_atlas
[2024-06-21 08:41:59] -rw-r--r-- 1 boinc boinc       105 Jun 21 05:47 job.xml
[2024-06-21 08:41:59] drwxrwx--x 2 boinc boinc      4096 Jun 21 05:47 shared
[2024-06-21 08:41:59] -rw-r--r-- 2 boinc boinc    482532 Jun 21 05:47 input.tar.gz
[2024-06-21 08:41:59] -rw-r--r-- 1 boinc boinc      6642 Jun 21 05:47 init_data.xml
[2024-06-21 08:41:59] -rw-r--r-- 2 boinc boinc 603323345 Jun 21 05:47 EVNT.38776100._000951.pool.root.1
[2024-06-21 08:41:59] -rw-r--r-- 2 boinc boinc     17537 Jun 21 05:47 start_atlas.sh
[2024-06-21 08:41:59] -rw-r--r-- 1 boinc boinc         0 Jun 21 05:47 boinc_lockfile
[2024-06-21 08:41:59] -rw-r--r-- 1 boinc boinc      2646 Jun 21 05:47 pandaJob.out
[2024-06-21 08:41:59] -rw------- 1 boinc boinc       424 Jun 21 05:47 setup.sh.local
[2024-06-21 08:41:59] -rw------- 1 boinc boinc   1024126 Jun 21 05:47 agis_schedconf.cvmfs.json
[2024-06-21 08:41:59] -rw------- 1 boinc boinc         0 Jun 21 05:47 agis_ddmendpoints.agis.ALL.json
[2024-06-21 08:41:59] -rw------- 1 boinc boinc   1321251 Jun 21 05:47 cric_ddmendpoints.json
[2024-06-21 08:41:59] drwx------ 4 boinc boinc      4096 Jun 21 05:47 pilot3
[2024-06-21 08:41:59] -rw------- 1 boinc boinc 233340128 Jun 21 08:41 HITS.38776104._058499.pool.root.1
[2024-06-21 08:41:59] -rw-r--r-- 1 boinc boinc       532 Jun 21 08:41 boinc_task_state.xml
[2024-06-21 08:41:59] -rw------- 1 boinc boinc      1038 Jun 21 08:41 memory_monitor_summary.json
[2024-06-21 08:41:59] -rw------- 1 boinc boinc    303457 Jun 21 08:41 log.38776104._058499.job.log.tgz.1
[2024-06-21 08:41:59] -rw------- 1 boinc boinc        95 Jun 21 08:41 pilot_heartbeat.json
[2024-06-21 08:41:59] -rw------- 1 boinc boinc      7717 Jun 21 08:41 heartbeat.json
[2024-06-21 08:41:59] -rw-r--r-- 1 boinc boinc      8192 Jun 21 08:41 boinc_mmap_file
[2024-06-21 08:41:59] -rw-r--r-- 1 boinc boinc        28 Jun 21 08:41 wrapper_checkpoint.txt
[2024-06-21 08:41:59] -rw------- 1 boinc boinc      4294 Jun 21 08:41 pilotlog.txt
[2024-06-21 08:41:59] -rw------- 1 boinc boinc    999711 Jun 21 08:41 log.38776104._058499.job.log.1
[2024-06-21 08:41:59] -rw------- 1 boinc boinc       357 Jun 21 08:41 output.list
[2024-06-21 08:41:59] -rw-r--r-- 1 boinc boinc       620 Jun 21 08:41 runtime_log
[2024-06-21 08:41:59] -rw------- 1 boinc boinc   1320960 Jun 21 08:41 result.tar.gz
[2024-06-21 08:41:59] -rw------- 1 boinc boinc       658 Jun 21 08:41 s0vNDm0aWe5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmZBlKDmWS7Ign.diag
[2024-06-21 08:41:59] -rw-r--r-- 1 boinc boinc     11410 Jun 21 08:41 runtime_log.err
[2024-06-21 08:41:59] -rw-r--r-- 1 boinc boinc     21250 Jun 21 08:41 stderr.txt
[2024-06-21 08:41:59] HITS file was successfully produced:
[2024-06-21 08:41:59] -rw------- 1 boinc boinc 233340128 Jun 21 08:41 shared/HITS.pool.root.1
[2024-06-21 08:41:59]  *** Contents of shared directory: ***
[2024-06-21 08:41:59] total 818848
[2024-06-21 08:41:59] -rw-r--r-- 2 boinc boinc    482532 Jun 21 05:47 input.tar.gz
[2024-06-21 08:41:59] -rw-r--r-- 2 boinc boinc 603323345 Jun 21 05:47 ATLAS.root_0
[2024-06-21 08:41:59] -rw-r--r-- 2 boinc boinc     17537 Jun 21 05:47 start_atlas.sh
[2024-06-21 08:41:59] -rw------- 1 boinc boinc 233340128 Jun 21 08:41 HITS.pool.root.1
[2024-06-21 08:41:59] -rw------- 1 boinc boinc   1320960 Jun 21 08:41 result.tar.gz
08:42:00 (1434416): run_atlas exited; CPU time 38439.158203
08:42:00 (1434416): called boinc_finish(0)

</stderr_txt>
]]>

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