Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:50:52 (1473947): wrapper (7.7.26015): starting
09:50:52 (1473947): wrapper: running run_atlas (--nthreads 4)
[2024-06-21 09:50:52] Arguments: --nthreads 4
[2024-06-21 09:50:52] Threads: 4
[2024-06-21 09:50:52] Checking for CVMFS
[2024-06-21 09:50:52] No cvmfs_config command found, will try listing directly
[2024-06-21 09:50:52] CVMFS is ok
[2024-06-21 09:50:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-21 09:50:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-21 09:50:52] Further information can be found at the LHC@home message board.
[2024-06-21 09:50:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-21 09:50:52] Checking for apptainer binary...
[2024-06-21 09:50:52] which: no apptainer in ((null))
[2024-06-21 09:50:52] apptainer is not installed, using version from CVMFS
[2024-06-21 09:50:52] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-21 09:50:52] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2024-06-21 09:50:52] apptainer works
[2024-06-21 09:50:52] Set ATHENA_PROC_NUMBER=4
[2024-06-21 09:50:52] Set ATHENA_CORE_NUMBER=4
[2024-06-21 09:50:52] Starting ATLAS job with PandaID=6238851087
[2024-06-21 09:50:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-21 13:50:13]  *** The last 200 lines of the pilot log: ***
[2024-06-21 13:50:13] 2024-06-21 11:49:59,531 | INFO     | current chi2=9.303885378523825 (change=7.541547954380368 %)
[2024-06-21 13:50:13] 2024-06-21 11:49:59,531 | INFO     | right removable region: 229
[2024-06-21 13:50:13] 2024-06-21 11:49:59,531 | INFO     | model: linear, x: [1718956601.0, 1718956662.0, 1718956723.0, 1718956784.0, 1718956845.0, 1718956906.0, 1718956967.0, 1718957028.0, 1718957089.0, 1718957150.0, 1718
[2024-06-21 13:50:13] 2024-06-21 11:49:59,531 | INFO     | sum of square deviations: 3772712597.5
[2024-06-21 13:50:13] 2024-06-21 11:49:59,532 | INFO     | sum of deviations: 109734399807.0
[2024-06-21 13:50:13] 2024-06-21 11:49:59,532 | INFO     | mean x: 1718963585.5
[2024-06-21 13:50:13] 2024-06-21 11:49:59,532 | INFO     | mean y: 2279154.6782608693
[2024-06-21 13:50:13] 2024-06-21 11:49:59,532 | INFO     | -- intersect: -49996079445.42479
[2024-06-21 13:50:13] 2024-06-21 11:49:59,532 | INFO     | intersect: -49996079445.42479
[2024-06-21 13:50:13] 2024-06-21 11:49:59,532 | INFO     | chi2: 5.526691668824578
[2024-06-21 13:50:13] 2024-06-21 11:49:59,533 | INFO     | current chi2=5.526691668824578 (change=45.07785340816209 %)
[2024-06-21 13:50:13] 2024-06-21 11:49:59,533 | INFO     | model: linear, x: [1718956906.0, 1718956967.0, 1718957028.0, 1718957089.0, 1718957150.0, 1718957211.0, 1718957272.0, 1718957333.0, 1718957394.0, 1718957455.0, 1718
[2024-06-21 13:50:13] 2024-06-21 11:49:59,533 | INFO     | sum of square deviations: 3531973200.0
[2024-06-21 13:50:13] 2024-06-21 11:49:59,534 | INFO     | sum of deviations: 52749772387.0
[2024-06-21 13:50:13] 2024-06-21 11:49:59,534 | INFO     | mean x: 1718963738.0
[2024-06-21 13:50:13] 2024-06-21 11:49:59,534 | INFO     | mean y: 2315184.702222222
[2024-06-21 13:50:13] 2024-06-21 11:49:59,534 | INFO     | -- intersect: -25670287857.984146
[2024-06-21 13:50:13] 2024-06-21 11:49:59,534 | INFO     | intersect: -25670287857.984146
[2024-06-21 13:50:13] 2024-06-21 11:49:59,534 | INFO     | chi2: 2.758881662141463
[2024-06-21 13:50:13] 2024-06-21 11:49:59,534 | INFO     | current chi2=2.758881662141463 (change=50.080774766140976 %)
[2024-06-21 13:50:13] 2024-06-21 11:49:59,534 | INFO     | model: linear, x: [1718957211.0, 1718957272.0, 1718957333.0, 1718957394.0, 1718957455.0, 1718957516.0, 1718957577.0, 1718957638.0, 1718957699.0, 1718957760.0, 1718
[2024-06-21 13:50:13] 2024-06-21 11:49:59,535 | INFO     | sum of square deviations: 3301699115.0
[2024-06-21 13:50:13] 2024-06-21 11:49:59,535 | INFO     | sum of deviations: 8209876692.5
[2024-06-21 13:50:13] 2024-06-21 11:49:59,536 | INFO     | mean x: 1718963890.5
[2024-06-21 13:50:13] 2024-06-21 11:49:59,536 | INFO     | mean y: 2344684.140909091
[2024-06-21 13:50:13] 2024-06-21 11:49:59,536 | INFO     | -- intersect: -4271964115.1528974
[2024-06-21 13:50:13] 2024-06-21 11:49:59,536 | INFO     | intersect: -4271964115.1528974
[2024-06-21 13:50:13] 2024-06-21 11:49:59,536 | INFO     | chi2: 1.1769202813286999
[2024-06-21 13:50:13] 2024-06-21 11:49:59,536 | INFO     | current chi2=1.1769202813286999 (change=57.34067548170347 %)
[2024-06-21 13:50:13] 2024-06-21 11:49:59,536 | INFO     | model: linear, x: [1718957516.0, 1718957577.0, 1718957638.0, 1718957699.0, 1718957760.0, 1718957821.0, 1718957882.0, 1718957943.0, 1718958004.0, 1718958065.0, 1718
[2024-06-21 13:50:13] 2024-06-21 11:49:59,536 | INFO     | sum of square deviations: 3081657780.0
[2024-06-21 13:50:13] 2024-06-21 11:49:59,537 | INFO     | sum of deviations: -5549359222.0
[2024-06-21 13:50:13] 2024-06-21 11:49:59,537 | INFO     | mean x: 1718964043.0
[2024-06-21 13:50:13] 2024-06-21 11:49:59,537 | INFO     | mean y: 2354100.7813953487
[2024-06-21 13:50:13] 2024-06-21 11:49:59,537 | INFO     | -- intersect: 3097814286.6000996
[2024-06-21 13:50:13] 2024-06-21 11:49:59,537 | INFO     | intersect: 3097814286.6000996
[2024-06-21 13:50:13] 2024-06-21 11:49:59,538 | INFO     | chi2: 0.8405794604318828
[2024-06-21 13:50:13] 2024-06-21 11:49:59,538 | INFO     | current chi2=0.8405794604318828 (change=28.578046128757386 %)
[2024-06-21 13:50:13] 2024-06-21 11:49:59,538 | INFO     | model: linear, x: [1718957821.0, 1718957882.0, 1718957943.0, 1718958004.0, 1718958065.0, 1718958126.0, 1718958187.0, 1718958248.0, 1718958309.0, 1718958370.0, 1718
[2024-06-21 13:50:13] 2024-06-21 11:49:59,538 | INFO     | sum of square deviations: 2871616632.5
[2024-06-21 13:50:13] 2024-06-21 11:49:59,539 | INFO     | sum of deviations: -6761482566.500002
[2024-06-21 13:50:13] 2024-06-21 11:49:59,539 | INFO     | mean x: 1718964195.5
[2024-06-21 13:50:13] 2024-06-21 11:49:59,539 | INFO     | mean y: 2354981.4904761906
[2024-06-21 13:50:13] 2024-06-21 11:49:59,539 | INFO     | -- intersect: 4049812538.5921383
[2024-06-21 13:50:13] 2024-06-21 11:49:59,539 | INFO     | intersect: 4049812538.5921383
[2024-06-21 13:50:13] 2024-06-21 11:49:59,539 | INFO     | chi2: 0.8398742682638408
[2024-06-21 13:50:13] 2024-06-21 11:49:59,539 | INFO     | current chi2=0.8398742682638408 (change=0.0838935759481523 %)
[2024-06-21 13:50:13] 2024-06-21 11:49:59,539 | INFO     | left removable region: 50
[2024-06-21 13:50:13] 2024-06-21 11:49:59,540 | INFO     | model: linear, x: [1718959346.0, 1718959407.0, 1718959468.0, 1718959529.0, 1718959590.0, 1718959651.0, 1718959712.0, 1718959773.0, 1718959834.0, 1718959895.0, 1718
[2024-06-21 13:50:13] 2024-06-21 11:49:59,540 | INFO     | sum of square deviations: 1778377530.0
[2024-06-21 13:50:13] 2024-06-21 11:49:59,540 | INFO     | sum of deviations: 2923929775.000001
[2024-06-21 13:50:13] 2024-06-21 11:49:59,540 | INFO     | mean x: 1718964775.0
[2024-06-21 13:50:13] 2024-06-21 11:49:59,540 | INFO     | mean y: 2368245.653631285
[2024-06-21 13:50:13] 2024-06-21 11:49:59,540 | INFO     | -- intersect: -2823877702.133775
[2024-06-21 13:50:13] 2024-06-21 11:49:59,540 | INFO     | intersect: -2823877702.133775
[2024-06-21 13:50:13] 2024-06-21 11:49:59,541 | INFO     | chi2: 0.00027513643276980463
[2024-06-21 13:50:13] 2024-06-21 11:49:59,541 | INFO     | -- intersect: -2823877702.133775
[2024-06-21 13:50:13] 2024-06-21 11:49:59,541 | INFO     | current memory leak: 1.64 B/s (using 179 data points, chi2=0.00)
[2024-06-21 13:50:13] 2024-06-21 11:49:59,541 | INFO     | ..............................
[2024-06-21 13:50:13] 2024-06-21 11:49:59,541 | INFO     | . Timing measurements:
[2024-06-21 13:50:13] 2024-06-21 11:49:59,541 | INFO     | . get job = 0 s
[2024-06-21 13:50:13] 2024-06-21 11:49:59,541 | INFO     | . initial setup = 1 s
[2024-06-21 13:50:13] 2024-06-21 11:49:59,541 | INFO     | . payload setup = 6 s
[2024-06-21 13:50:13] 2024-06-21 11:49:59,541 | INFO     | . stage-in = 0 s
[2024-06-21 13:50:13] 2024-06-21 11:49:59,541 | INFO     | . payload execution = 14296 s
[2024-06-21 13:50:13] 2024-06-21 11:49:59,542 | INFO     | . stage-out = 0 s
[2024-06-21 13:50:13] 2024-06-21 11:49:59,542 | INFO     | . log creation = 0 s
[2024-06-21 13:50:13] 2024-06-21 11:49:59,542 | INFO     | ..............................
[2024-06-21 13:50:13] 2024-06-21 11:49:59,611 | INFO     | 
[2024-06-21 13:50:13] 2024-06-21 11:49:59,611 | INFO     | job summary report
[2024-06-21 13:50:13] 2024-06-21 11:49:59,611 | INFO     | --------------------------------------------------
[2024-06-21 13:50:13] 2024-06-21 11:49:59,611 | INFO     | PanDA job id: 6238851087
[2024-06-21 13:50:13] 2024-06-21 11:49:59,611 | INFO     | task id: 40024040
[2024-06-21 13:50:13] 2024-06-21 11:49:59,611 | INFO     | errors: (none)
[2024-06-21 13:50:13] 2024-06-21 11:49:59,611 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-21 13:50:13] 2024-06-21 11:49:59,611 | INFO     | pilot state: finished 
[2024-06-21 13:50:13] 2024-06-21 11:49:59,612 | INFO     | transexitcode: 0
[2024-06-21 13:50:13] 2024-06-21 11:49:59,612 | INFO     | exeerrorcode: 0
[2024-06-21 13:50:13] 2024-06-21 11:49:59,612 | INFO     | exeerrordiag: 
[2024-06-21 13:50:13] 2024-06-21 11:49:59,612 | INFO     | exitcode: 0
[2024-06-21 13:50:13] 2024-06-21 11:49:59,612 | INFO     | exitmsg: OK
[2024-06-21 13:50:13] 2024-06-21 11:49:59,612 | INFO     | cpuconsumptiontime: 52570 s
[2024-06-21 13:50:13] 2024-06-21 11:49:59,612 | INFO     | nevents: 400
[2024-06-21 13:50:13] 2024-06-21 11:49:59,612 | INFO     | neventsw: 0
[2024-06-21 13:50:13] 2024-06-21 11:49:59,612 | INFO     | pid: 1488723
[2024-06-21 13:50:13] 2024-06-21 11:49:59,612 | INFO     | pgrp: 1488723
[2024-06-21 13:50:13] 2024-06-21 11:49:59,612 | INFO     | corecount: 4
[2024-06-21 13:50:13] 2024-06-21 11:49:59,612 | INFO     | event service: False
[2024-06-21 13:50:13] 2024-06-21 11:49:59,612 | INFO     | sizes: {0: 2386846, 1: 2386846, 6: 2387080, 11: 2387108, 14306: 2417507, 14307: 2417506, 14309: 2426728, 14316: 2426842}
[2024-06-21 13:50:13] 2024-06-21 11:49:59,613 | INFO     | --------------------------------------------------
[2024-06-21 13:50:13] 2024-06-21 11:49:59,613 | INFO     | 
[2024-06-21 13:50:13] 2024-06-21 11:49:59,613 | INFO     | executing command: ls -lF /scratch/boinc/var/slot28/slots/0
[2024-06-21 13:50:13] 2024-06-21 11:49:59,634 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-21 13:50:13] 2024-06-21 11:49:59,634 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-21 13:50:13] 2024-06-21 11:49:59,635 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-21 13:50:13] 2024-06-21 11:49:59,635 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-21 13:50:13] 2024-06-21 11:49:59,635 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-21 13:50:13] 2024-06-21 11:49:59,635 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-21 13:50:13] 2024-06-21 11:49:59,635 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-21 13:50:13] 2024-06-21 11:49:59,635 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-21 13:50:13] 2024-06-21 11:49:59,635 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-21 13:50:13] 2024-06-21 11:49:59,635 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-21 13:50:13] 2024-06-21 11:49:59,635 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-21 13:50:13] 2024-06-21 11:49:59,635 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-21 13:50:13] 2024-06-21 11:49:59,635 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-21 13:50:13] 2024-06-21 11:49:59,636 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-21 13:50:13] 2024-06-21 11:49:59,636 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-21 13:50:13] 2024-06-21 11:49:59,636 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-21 13:50:13] 2024-06-21 11:49:59,636 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-21 13:50:13] 2024-06-21 11:49:59,636 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-21 13:50:13] 2024-06-21 11:49:59,636 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-21 13:50:13] 2024-06-21 11:49:59,636 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-21 13:50:13] 2024-06-21 11:49:59,636 | INFO     | job 6238851087 has completed (purged errors)
[2024-06-21 13:50:13] 2024-06-21 11:49:59,636 | INFO     | overall cleanup function is called
[2024-06-21 13:50:13] 2024-06-21 11:50:00,644 | INFO     | --- collectZombieJob: --- 10, [1488723]
[2024-06-21 13:50:13] 2024-06-21 11:50:00,644 | INFO     | zombie collector waiting for pid 1488723
[2024-06-21 13:50:13] 2024-06-21 11:50:00,644 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-21 13:50:13] 2024-06-21 11:50:00,701 | INFO     | 14335s have passed since pilot start
[2024-06-21 13:50:13] 2024-06-21 11:50:01,649 | INFO     | collected zombie processes
[2024-06-21 13:50:13] 2024-06-21 11:50:01,649 | INFO     | will now attempt to kill all subprocesses of pid=1488723
[2024-06-21 13:50:13] 2024-06-21 11:50:01,894 | INFO     | process IDs to be killed: [1488723] (in reverse order)
[2024-06-21 13:50:13] 2024-06-21 11:50:02,048 | WARNING  | found no corresponding commands to process id(s)
[2024-06-21 13:50:13] 2024-06-21 11:50:02,048 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-21 13:50:13] 2024-06-21 11:50:02,060 | INFO     | did not find any defunct processes belonging to 1488723
[2024-06-21 13:50:13] 2024-06-21 11:50:02,069 | INFO     | did not find any defunct processes belonging to 1488723
[2024-06-21 13:50:13] 2024-06-21 11:50:02,069 | INFO     | ready for new job
[2024-06-21 13:50:13] 2024-06-21 11:50:02,069 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-21 13:50:13] 2024-06-21 11:50:02,071 | INFO     | *************************************
[2024-06-21 13:50:13] 2024-06-21 11:50:02,071 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-21 13:50:13] 2024-06-21 11:50:02,071 | INFO     | *************************************
[2024-06-21 13:50:13] 2024-06-21 11:50:02,071 | INFO     | 
[2024-06-21 13:50:13] 2024-06-21 11:50:02,076 | INFO     | architecture information:
[2024-06-21 13:50:13] 2024-06-21 11:50:02,076 | INFO     | executing command: cat /etc/os-release
[2024-06-21 13:50:13] 2024-06-21 11:50:02,095 | INFO     | cat /etc/os-release:
[2024-06-21 13:50:13] NAME="CentOS Linux"
[2024-06-21 13:50:13] VERSION="7 (Core)"
[2024-06-21 13:50:13] ID="centos"
[2024-06-21 13:50:13] ID_LIKE="rhel fedora"
[2024-06-21 13:50:13] VERSION_ID="7"
[2024-06-21 13:50:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-21 13:50:13] ANSI_COLOR="0;31"
[2024-06-21 13:50:13] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-21 13:50:13] HOME_URL="https://www.centos.org/"
[2024-06-21 13:50:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-21 13:50:13] 
[2024-06-21 13:50:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-21 13:50:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-21 13:50:13] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-21 13:50:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-21 13:50:13] 
[2024-06-21 13:50:13] 2024-06-21 11:50:02,095 | INFO     | *************************************
[2024-06-21 13:50:13] 2024-06-21 11:50:02,598 | INFO     | executing command: df -mP /scratch/boinc/var/slot28/slots/0
[2024-06-21 13:50:13] 2024-06-21 11:50:02,623 | INFO     | sufficient remaining disk space (3175933280256 B)
[2024-06-21 13:50:13] 2024-06-21 11:50:02,623 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-21 13:50:13] 2024-06-21 11:50:02,623 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-21 13:50:13] 2024-06-21 11:50:02,624 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-21 13:50:13] 2024-06-21 11:50:02,624 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-06-21 13:50:13] 2024-06-21 11:50:02,625 | INFO     | found 0 job(s) in 20 queues
[2024-06-21 13:50:13] 2024-06-21 11:50:02,625 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-21 13:50:13] 2024-06-21 11:50:02,625 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-21 13:50:13] 2024-06-21 11:50:02,642 | INFO     | all job control threads have been joined
[2024-06-21 13:50:13] 2024-06-21 11:50:02,671 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-21 13:50:13] 2024-06-21 11:50:02,956 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-21 13:50:13] 2024-06-21 11:50:02,956 | INFO     | aborting loop
[2024-06-21 13:50:13] 2024-06-21 11:50:03,166 | INFO     | all payload control threads have been joined
[2024-06-21 13:50:13] 2024-06-21 11:50:03,628 | INFO     | [job] retrieve thread has finished
[2024-06-21 13:50:13] 2024-06-21 11:50:03,648 | INFO     | [job] control thread has finished
[2024-06-21 13:50:13] 2024-06-21 11:50:03,663 | INFO     | all data control threads have been joined
[2024-06-21 13:50:13] 2024-06-21 11:50:03,961 | INFO     | [job] job monitor thread has finished
[2024-06-21 13:50:13] 2024-06-21 11:50:04,104 | INFO     | [payload] validate_post thread has finished
[2024-06-21 13:50:13] 2024-06-21 11:50:04,172 | INFO     | [payload] control thread has finished
[2024-06-21 13:50:13] 2024-06-21 11:50:04,272 | INFO     | [payload] execute_payloads thread has finished
[2024-06-21 13:50:13] 2024-06-21 11:50:04,282 | INFO     | [job] validate thread has finished
[2024-06-21 13:50:13] 2024-06-21 11:50:04,420 | INFO     | [data] copytool_in thread has finished
[2024-06-21 13:50:13] 2024-06-21 11:50:04,491 | INFO     | [payload] validate_pre thread has finished
[2024-06-21 13:50:13] 2024-06-21 11:50:04,614 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-21 13:50:13] 2024-06-21 11:50:04,621 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-21 13:50:13] 2024-06-21 11:50:04,630 | INFO     | [data] copytool_out thread has finished
[2024-06-21 13:50:13] 2024-06-21 11:50:04,668 | INFO     | [data] control thread has finished
[2024-06-21 13:50:13] 2024-06-21 11:50:04,706 | INFO     | [job] create_data_payload thread has finished
[2024-06-21 13:50:13] 2024-06-21 11:50:04,816 | INFO     | [payload] failed_post thread has finished
[2024-06-21 13:50:13] 2024-06-21 11:50:05,626 | INFO     | [job] queue monitor thread has finished
[2024-06-21 13:50:13] 2024-06-21 11:50:06,677 | INFO     | [data] queue_monitor thread has finished
[2024-06-21 13:50:13] 2024-06-21 11:50:07,168 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47636561855552)>', '<ExcThread(monitor, started 47636744230656)>']
[2024-06-21 13:50:13] 2024-06-21 11:50:07,650 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-21 13:50:13] 2024-06-21 11:50:07,650 | INFO     | [monitor] control thread has ended
[2024-06-21 13:50:13] 2024-06-21 11:50:12,193 | INFO     | all workflow threads have been joined
[2024-06-21 13:50:13] 2024-06-21 11:50:12,194 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-21 13:50:13] 2024-06-21 11:50:12,194 | INFO     | traces error code: 0
[2024-06-21 13:50:13] 2024-06-21 11:50:12,194 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-21 13:50:13] 2024-06-21 11:50:12,305 [wrapper] ==== pilot stdout END ====
[2024-06-21 13:50:13] 2024-06-21 11:50:12,307 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-21 13:50:13] 2024-06-21 11:50:12,310 [wrapper] pilotpid: 1478677
[2024-06-21 13:50:13] 2024-06-21 11:50:12,312 [wrapper] Pilot exit status: 0
[2024-06-21 13:50:13] 2024-06-21 11:50:12,322 [wrapper] pandaids: 6238851087
[2024-06-21 13:50:13] 2024-06-21 11:50:12,445 [wrapper] cleanup supervisor_pilot 2524766 1478678
[2024-06-21 13:50:13] 2024-06-21 11:50:12,447 [wrapper] Test setup, not cleaning
[2024-06-21 13:50:13] 2024-06-21 11:50:12,449 [wrapper] ==== wrapper stdout END ====
[2024-06-21 13:50:13] 2024-06-21 11:50:12,452 [wrapper] ==== wrapper stderr END ====
[2024-06-21 13:50:13] 2024-06-21 11:50:12,456 [wrapper] apfmon messages muted
[2024-06-21 13:50:13]  *** Error codes and diagnostics ***
[2024-06-21 13:50:13]     "exeErrorCode": 0,
[2024-06-21 13:50:13]     "exeErrorDiag": "",
[2024-06-21 13:50:13]     "pilotErrorCode": 0,
[2024-06-21 13:50:13]     "pilotErrorDiag": "",
[2024-06-21 13:50:13]  *** Listing of results directory ***
[2024-06-21 13:50:13] total 876612
[2024-06-21 13:50:13] -rw-r--r-- 1 boinc boinc    469766 Jun 20 13:59 pilot3.tar.gz
[2024-06-21 13:50:13] -rwx------ 1 boinc boinc     32308 Jun 20 14:28 runpilot2-wrapper.sh
[2024-06-21 13:50:13] -rw-r--r-- 1 boinc boinc      5654 Jun 20 14:28 queuedata.json
[2024-06-21 13:50:13] -rw-r--r-- 1 boinc boinc       100 Jun 21 09:50 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-21 13:50:13] -rwxr-xr-x 1 boinc boinc      7986 Jun 21 09:50 run_atlas
[2024-06-21 13:50:13] -rw-r--r-- 1 boinc boinc       105 Jun 21 09:50 job.xml
[2024-06-21 13:50:13] -rw-r--r-- 1 boinc boinc      6642 Jun 21 09:50 init_data.xml
[2024-06-21 13:50:13] -rw-r--r-- 2 boinc boinc 616738254 Jun 21 09:50 EVNT.40024038._000033.pool.root.1
[2024-06-21 13:50:13] -rw-r--r-- 2 boinc boinc     17537 Jun 21 09:50 start_atlas.sh
[2024-06-21 13:50:13] drwxrwx--x 2 boinc boinc      4096 Jun 21 09:50 shared
[2024-06-21 13:50:13] -rw-r--r-- 2 boinc boinc    482469 Jun 21 09:50 input.tar.gz
[2024-06-21 13:50:13] -rw-r--r-- 1 boinc boinc         0 Jun 21 09:50 boinc_lockfile
[2024-06-21 13:50:13] -rw-r--r-- 1 boinc boinc      2480 Jun 21 09:50 pandaJob.out
[2024-06-21 13:50:13] -rw------- 1 boinc boinc       424 Jun 21 09:50 setup.sh.local
[2024-06-21 13:50:13] -rw------- 1 boinc boinc   1023442 Jun 21 09:51 agis_schedconf.cvmfs.json
[2024-06-21 13:50:13] -rw------- 1 boinc boinc   1321251 Jun 21 09:51 cric_ddmendpoints.json
[2024-06-21 13:50:13] drwx------ 4 boinc boinc      4096 Jun 21 09:51 pilot3
[2024-06-21 13:50:13] -rw------- 1 boinc boinc 273753380 Jun 21 13:49 HITS.40024040._000305.pool.root.1
[2024-06-21 13:50:13] -rw-r--r-- 1 boinc boinc       532 Jun 21 13:49 boinc_task_state.xml
[2024-06-21 13:50:13] -rw------- 1 boinc boinc      1039 Jun 21 13:49 memory_monitor_summary.json
[2024-06-21 13:50:13] -rw------- 1 boinc boinc         0 Jun 21 13:49 agis_ddmendpoints.agis.ALL.json
[2024-06-21 13:50:13] -rw------- 1 boinc boinc    332783 Jun 21 13:49 log.40024040._000305.job.log.tgz.1
[2024-06-21 13:50:13] -rw------- 1 boinc boinc        95 Jun 21 13:49 pilot_heartbeat.json
[2024-06-21 13:50:13] -rw------- 1 boinc boinc      7712 Jun 21 13:49 heartbeat.json
[2024-06-21 13:50:13] -rw-r--r-- 1 boinc boinc      8192 Jun 21 13:50 boinc_mmap_file
[2024-06-21 13:50:13] -rw-r--r-- 1 boinc boinc        28 Jun 21 13:50 wrapper_checkpoint.txt
[2024-06-21 13:50:13] -rw------- 1 boinc boinc      4345 Jun 21 13:50 pilotlog.txt
[2024-06-21 13:50:13] -rw------- 1 boinc boinc   1478315 Jun 21 13:50 log.40024040._000305.job.log.1
[2024-06-21 13:50:13] -rw------- 1 boinc boinc       357 Jun 21 13:50 output.list
[2024-06-21 13:50:13] -rw-r--r-- 1 boinc boinc       620 Jun 21 13:50 runtime_log
[2024-06-21 13:50:13] -rw------- 1 boinc boinc   1832960 Jun 21 13:50 result.tar.gz
[2024-06-21 13:50:13] -rw-r--r-- 1 boinc boinc     11410 Jun 21 13:50 runtime_log.err
[2024-06-21 13:50:13] -rw------- 1 boinc boinc       657 Jun 21 13:50 gIOKDmH5Ve5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmm9kKDmZGSbHn.diag
[2024-06-21 13:50:13] -rw-r--r-- 1 boinc boinc     21379 Jun 21 13:50 stderr.txt
[2024-06-21 13:50:13] HITS file was successfully produced:
[2024-06-21 13:50:13] -rw------- 1 boinc boinc 273753380 Jun 21 13:49 shared/HITS.pool.root.1
[2024-06-21 13:50:13]  *** Contents of shared directory: ***
[2024-06-21 13:50:13] total 871916
[2024-06-21 13:50:13] -rw-r--r-- 2 boinc boinc 616738254 Jun 21 09:50 ATLAS.root_0
[2024-06-21 13:50:13] -rw-r--r-- 2 boinc boinc     17537 Jun 21 09:50 start_atlas.sh
[2024-06-21 13:50:13] -rw-r--r-- 2 boinc boinc    482469 Jun 21 09:50 input.tar.gz
[2024-06-21 13:50:13] -rw------- 1 boinc boinc 273753380 Jun 21 13:49 HITS.pool.root.1
[2024-06-21 13:50:13] -rw------- 1 boinc boinc   1832960 Jun 21 13:50 result.tar.gz
13:50:14 (1473947): run_atlas exited; CPU time 52262.528408
13:50:14 (1473947): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN