Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:26:39 (286047): wrapper (7.7.26015): starting
17:26:39 (286047): wrapper: running run_atlas (--nthreads 4)
[2024-06-20 17:26:39] Arguments: --nthreads 4
[2024-06-20 17:26:39] Threads: 4
[2024-06-20 17:26:39] Checking for CVMFS
[2024-06-20 17:26:39] No cvmfs_config command found, will try listing directly
[2024-06-20 17:26:39] CVMFS is ok
[2024-06-20 17:26:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-20 17:26:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-20 17:26:39] Further information can be found at the LHC@home message board.
[2024-06-20 17:26:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-20 17:26:39] Checking for apptainer binary...
[2024-06-20 17:26:39] which: no apptainer in ((null))
[2024-06-20 17:26:39] apptainer is not installed, using version from CVMFS
[2024-06-20 17:26:39] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-20 17:26:41] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot20/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut07.grid.cesnet.cz
[2024-06-20 17:26:41] apptainer works
[2024-06-20 17:26:41] Set ATHENA_PROC_NUMBER=4
[2024-06-20 17:26:41] Set ATHENA_CORE_NUMBER=4
[2024-06-20 17:26:41] Starting ATLAS job with PandaID=6238851024
[2024-06-20 17:26:41] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot20/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-20 21:41:07]  *** The last 200 lines of the pilot log: ***
[2024-06-20 21:41:07] 2024-06-20 19:40:50,781 | WARNING  | GPU info not found in prmon json
[2024-06-20 21:41:07] 2024-06-20 19:40:50,781 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-06-20 21:41:07] 2024-06-20 19:40:50,781 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-06-20 21:41:07] 2024-06-20 19:40:50,786 | INFO     | fitting pss+swap vs Time
[2024-06-20 21:41:07] 2024-06-20 19:40:50,786 | INFO     | model: linear, x: [1718897234.0, 1718897295.0, 1718897356.0, 1718897417.0, 1718897478.0, 1718897539.0, 1718897600.0, 1718897661.0, 1718897722.0, 1718897783.0, 1718
[2024-06-20 21:41:07] 2024-06-20 19:40:50,786 | INFO     | sum of square deviations: 4844974562.5
[2024-06-20 21:41:07] 2024-06-20 19:40:50,788 | INFO     | sum of deviations: 111171737927.0
[2024-06-20 21:41:07] 2024-06-20 19:40:50,788 | INFO     | mean x: 1718904828.5
[2024-06-20 21:41:07] 2024-06-20 19:40:50,788 | INFO     | mean y: 2306290.864
[2024-06-20 21:41:07] 2024-06-20 19:40:50,788 | INFO     | -- intersect: -39439311957.148605
[2024-06-20 21:41:07] 2024-06-20 19:40:50,788 | INFO     | intersect: -39439311957.148605
[2024-06-20 21:41:07] 2024-06-20 19:40:50,789 | INFO     | chi2: 5.00222435725084
[2024-06-20 21:41:07] 2024-06-20 19:40:50,789 | INFO     | model: linear, x: [1718897234.0, 1718897295.0, 1718897356.0, 1718897417.0, 1718897478.0, 1718897539.0, 1718897600.0, 1718897661.0, 1718897722.0, 1718897783.0, 1718
[2024-06-20 21:41:07] 2024-06-20 19:40:50,789 | INFO     | sum of square deviations: 4560048290.0
[2024-06-20 21:41:07] 2024-06-20 19:40:50,791 | INFO     | sum of deviations: 124117314758.0
[2024-06-20 21:41:07] 2024-06-20 19:40:50,791 | INFO     | mean x: 1718904676.0
[2024-06-20 21:41:07] 2024-06-20 19:40:50,791 | INFO     | mean y: 2313084.4244897957
[2024-06-20 21:41:07] 2024-06-20 19:40:50,791 | INFO     | -- intersect: -46783558279.68995
[2024-06-20 21:41:07] 2024-06-20 19:40:50,791 | INFO     | intersect: -46783558279.68995
[2024-06-20 21:41:07] 2024-06-20 19:40:50,792 | INFO     | chi2: 4.263420548745214
[2024-06-20 21:41:07] 2024-06-20 19:40:50,792 | INFO     | current chi2=4.263420548745214 (change=14.769505638720757 %)
[2024-06-20 21:41:07] 2024-06-20 19:40:50,792 | INFO     | right removable region: 244
[2024-06-20 21:41:07] 2024-06-20 19:40:50,792 | INFO     | model: linear, x: [1718897539.0, 1718897600.0, 1718897661.0, 1718897722.0, 1718897783.0, 1718897844.0, 1718897905.0, 1718897966.0, 1718898027.0, 1718898088.0, 1718
[2024-06-20 21:41:07] 2024-06-20 19:40:50,792 | INFO     | sum of square deviations: 4560048290.0
[2024-06-20 21:41:07] 2024-06-20 19:40:50,794 | INFO     | sum of deviations: 51568583515.00001
[2024-06-20 21:41:07] 2024-06-20 19:40:50,794 | INFO     | mean x: 1718904981.0
[2024-06-20 21:41:07] 2024-06-20 19:40:50,794 | INFO     | mean y: 2338128.1591836736
[2024-06-20 21:41:07] 2024-06-20 19:40:50,795 | INFO     | -- intersect: -19436380374.325798
[2024-06-20 21:41:07] 2024-06-20 19:40:50,795 | INFO     | intersect: -19436380374.325798
[2024-06-20 21:41:07] 2024-06-20 19:40:50,795 | INFO     | chi2: 2.4549248384504083
[2024-06-20 21:41:07] 2024-06-20 19:40:50,795 | INFO     | current chi2=2.4549248384504083 (change=50.92333603765816 %)
[2024-06-20 21:41:07] 2024-06-20 19:40:50,795 | INFO     | model: linear, x: [1718897844.0, 1718897905.0, 1718897966.0, 1718898027.0, 1718898088.0, 1718898149.0, 1718898210.0, 1718898271.0, 1718898332.0, 1718898393.0, 1718
[2024-06-20 21:41:07] 2024-06-20 19:40:50,796 | INFO     | sum of square deviations: 4286517580.0
[2024-06-20 21:41:07] 2024-06-20 19:40:50,797 | INFO     | sum of deviations: 2024091721.5000057
[2024-06-20 21:41:07] 2024-06-20 19:40:50,797 | INFO     | mean x: 1718905133.5
[2024-06-20 21:41:07] 2024-06-20 19:40:50,797 | INFO     | mean y: 2365752.3541666665
[2024-06-20 21:41:07] 2024-06-20 19:40:50,797 | INFO     | -- intersect: -809300497.8892798
[2024-06-20 21:41:07] 2024-06-20 19:40:50,798 | INFO     | intersect: -809300497.8892798
[2024-06-20 21:41:07] 2024-06-20 19:40:50,798 | INFO     | chi2: 0.8406859042895117
[2024-06-20 21:41:07] 2024-06-20 19:40:50,798 | INFO     | current chi2=0.8406859042895117 (change=65.75512654716682 %)
[2024-06-20 21:41:07] 2024-06-20 19:40:50,798 | INFO     | model: linear, x: [1718898149.0, 1718898210.0, 1718898271.0, 1718898332.0, 1718898393.0, 1718898454.0, 1718898515.0, 1718898576.0, 1718898637.0, 1718898698.0, 1718
[2024-06-20 21:41:07] 2024-06-20 19:40:50,798 | INFO     | sum of square deviations: 4024149870.0
[2024-06-20 21:41:07] 2024-06-20 19:40:50,800 | INFO     | sum of deviations: -6003935614.0
[2024-06-20 21:41:07] 2024-06-20 19:40:50,800 | INFO     | mean x: 1718905286.0
[2024-06-20 21:41:07] 2024-06-20 19:40:50,800 | INFO     | mean y: 2370378.055319149
[2024-06-20 21:41:07] 2024-06-20 19:40:50,800 | INFO     | -- intersect: 2566936062.0138683
[2024-06-20 21:41:07] 2024-06-20 19:40:50,801 | INFO     | intersect: 2566936062.0138683
[2024-06-20 21:41:07] 2024-06-20 19:40:50,801 | INFO     | chi2: 0.7723702583672777
[2024-06-20 21:41:07] 2024-06-20 19:40:50,801 | INFO     | current chi2=0.7723702583672777 (change=8.126179536692673 %)
[2024-06-20 21:41:07] 2024-06-20 19:40:50,801 | INFO     | left removable region: 30
[2024-06-20 21:41:07] 2024-06-20 19:40:50,801 | INFO     | model: linear, x: [1718899064.0, 1718899125.0, 1718899186.0, 1718899247.0, 1718899308.0, 1718899369.0, 1718899430.0, 1718899491.0, 1718899552.0, 1718899613.0, 1718
[2024-06-20 21:41:07] 2024-06-20 19:40:50,802 | INFO     | sum of square deviations: 3038856977.5
[2024-06-20 21:41:07] 2024-06-20 19:40:50,803 | INFO     | sum of deviations: 5278892847.0
[2024-06-20 21:41:07] 2024-06-20 19:40:50,803 | INFO     | mean x: 1718905560.5
[2024-06-20 21:41:07] 2024-06-20 19:40:50,803 | INFO     | mean y: 2381017.420560748
[2024-06-20 21:41:07] 2024-06-20 19:40:50,803 | INFO     | -- intersect: -2983583223.468751
[2024-06-20 21:41:07] 2024-06-20 19:40:50,803 | INFO     | intersect: -2983583223.468751
[2024-06-20 21:41:07] 2024-06-20 19:40:50,804 | INFO     | chi2: 0.00040851088304049376
[2024-06-20 21:41:07] 2024-06-20 19:40:50,804 | INFO     | -- intersect: -2983583223.468751
[2024-06-20 21:41:07] 2024-06-20 19:40:50,804 | INFO     | current memory leak: 1.74 B/s (using 214 data points, chi2=0.00)
[2024-06-20 21:41:07] 2024-06-20 19:40:50,805 | INFO     | ..............................
[2024-06-20 21:41:07] 2024-06-20 19:40:50,805 | INFO     | . Timing measurements:
[2024-06-20 21:41:07] 2024-06-20 19:40:50,805 | INFO     | . get job = 0 s
[2024-06-20 21:41:07] 2024-06-20 19:40:50,805 | INFO     | . initial setup = 1 s
[2024-06-20 21:41:07] 2024-06-20 19:40:50,805 | INFO     | . payload setup = 5 s
[2024-06-20 21:41:07] 2024-06-20 19:40:50,805 | INFO     | . stage-in = 0 s
[2024-06-20 21:41:07] 2024-06-20 19:40:50,805 | INFO     | . payload execution = 15203 s
[2024-06-20 21:41:07] 2024-06-20 19:40:50,805 | INFO     | . stage-out = 1 s
[2024-06-20 21:41:07] 2024-06-20 19:40:50,805 | INFO     | . log creation = 0 s
[2024-06-20 21:41:07] 2024-06-20 19:40:50,805 | INFO     | ..............................
[2024-06-20 21:41:07] 2024-06-20 19:40:51,130 | INFO     | 
[2024-06-20 21:41:07] 2024-06-20 19:40:51,130 | INFO     | job summary report
[2024-06-20 21:41:07] 2024-06-20 19:40:51,130 | INFO     | --------------------------------------------------
[2024-06-20 21:41:07] 2024-06-20 19:40:51,130 | INFO     | PanDA job id: 6238851024
[2024-06-20 21:41:07] 2024-06-20 19:40:51,130 | INFO     | task id: 40024040
[2024-06-20 21:41:07] 2024-06-20 19:40:51,130 | INFO     | errors: (none)
[2024-06-20 21:41:07] 2024-06-20 19:40:51,130 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-20 21:41:07] 2024-06-20 19:40:51,131 | INFO     | pilot state: finished 
[2024-06-20 21:41:07] 2024-06-20 19:40:51,131 | INFO     | transexitcode: 0
[2024-06-20 21:41:07] 2024-06-20 19:40:51,131 | INFO     | exeerrorcode: 0
[2024-06-20 21:41:07] 2024-06-20 19:40:51,131 | INFO     | exeerrordiag: 
[2024-06-20 21:41:07] 2024-06-20 19:40:51,131 | INFO     | exitcode: 0
[2024-06-20 21:41:07] 2024-06-20 19:40:51,131 | INFO     | exitmsg: OK
[2024-06-20 21:41:07] 2024-06-20 19:40:51,131 | INFO     | cpuconsumptiontime: 57582 s
[2024-06-20 21:41:07] 2024-06-20 19:40:51,131 | INFO     | nevents: 400
[2024-06-20 21:41:07] 2024-06-20 19:40:51,131 | INFO     | neventsw: 0
[2024-06-20 21:41:07] 2024-06-20 19:40:51,131 | INFO     | pid: 297631
[2024-06-20 21:41:07] 2024-06-20 19:40:51,131 | INFO     | pgrp: 297631
[2024-06-20 21:41:07] 2024-06-20 19:40:51,131 | INFO     | corecount: 4
[2024-06-20 21:41:07] 2024-06-20 19:40:51,131 | INFO     | event service: False
[2024-06-20 21:41:07] 2024-06-20 19:40:51,131 | INFO     | sizes: {0: 2386684, 1: 2386883, 4: 2387089, 11: 2387117, 15211: 2417957, 15212: 2417956, 15214: 2427122, 15215: 2427178, 15225: 2427348}
[2024-06-20 21:41:07] 2024-06-20 19:40:51,132 | INFO     | --------------------------------------------------
[2024-06-20 21:41:07] 2024-06-20 19:40:51,132 | INFO     | 
[2024-06-20 21:41:07] 2024-06-20 19:40:51,132 | INFO     | executing command: ls -lF /scratch/boinc/var/slot20/slots/1
[2024-06-20 21:41:07] 2024-06-20 19:40:51,157 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-20 21:41:07] 2024-06-20 19:40:51,157 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-20 21:41:07] 2024-06-20 19:40:51,157 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-20 21:41:07] 2024-06-20 19:40:51,157 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-20 21:41:07] 2024-06-20 19:40:51,157 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-20 21:41:07] 2024-06-20 19:40:51,157 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-20 21:41:07] 2024-06-20 19:40:51,157 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-20 21:41:07] 2024-06-20 19:40:51,157 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-20 21:41:07] 2024-06-20 19:40:51,158 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-20 21:41:07] 2024-06-20 19:40:51,158 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-20 21:41:07] 2024-06-20 19:40:51,158 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-20 21:41:07] 2024-06-20 19:40:51,158 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-20 21:41:07] 2024-06-20 19:40:51,158 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-20 21:41:07] 2024-06-20 19:40:51,158 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-20 21:41:07] 2024-06-20 19:40:51,158 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-20 21:41:07] 2024-06-20 19:40:51,158 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-20 21:41:07] 2024-06-20 19:40:51,158 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-20 21:41:07] 2024-06-20 19:40:51,158 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-20 21:41:07] 2024-06-20 19:40:51,158 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-20 21:41:07] 2024-06-20 19:40:51,158 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-20 21:41:07] 2024-06-20 19:40:51,159 | INFO     | job 6238851024 has completed (purged errors)
[2024-06-20 21:41:07] 2024-06-20 19:40:51,159 | INFO     | overall cleanup function is called
[2024-06-20 21:41:07] 2024-06-20 19:40:52,166 | INFO     | --- collectZombieJob: --- 10, [297631]
[2024-06-20 21:41:07] 2024-06-20 19:40:52,166 | INFO     | zombie collector waiting for pid 297631
[2024-06-20 21:41:07] 2024-06-20 19:40:52,166 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-20 21:41:07] 2024-06-20 19:40:53,171 | INFO     | collected zombie processes
[2024-06-20 21:41:07] 2024-06-20 19:40:53,171 | INFO     | will now attempt to kill all subprocesses of pid=297631
[2024-06-20 21:41:07] 2024-06-20 19:40:53,368 | INFO     | process IDs to be killed: [297631] (in reverse order)
[2024-06-20 21:41:07] 2024-06-20 19:40:53,509 | WARNING  | found no corresponding commands to process id(s)
[2024-06-20 21:41:07] 2024-06-20 19:40:53,510 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-20 21:41:07] 2024-06-20 19:40:53,520 | INFO     | did not find any defunct processes belonging to 297631
[2024-06-20 21:41:07] 2024-06-20 19:40:53,529 | INFO     | did not find any defunct processes belonging to 297631
[2024-06-20 21:41:07] 2024-06-20 19:40:53,530 | INFO     | ready for new job
[2024-06-20 21:41:07] 2024-06-20 19:40:53,530 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-20 21:41:07] 2024-06-20 19:40:53,532 | INFO     | *************************************
[2024-06-20 21:41:07] 2024-06-20 19:40:53,532 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-20 21:41:07] 2024-06-20 19:40:53,532 | INFO     | *************************************
[2024-06-20 21:41:07] 2024-06-20 19:40:53,533 | INFO     | 
[2024-06-20 21:41:07] 2024-06-20 19:40:53,537 | INFO     | architecture information:
[2024-06-20 21:41:07] 2024-06-20 19:40:53,538 | INFO     | executing command: cat /etc/os-release
[2024-06-20 21:41:07] 2024-06-20 19:40:53,558 | INFO     | cat /etc/os-release:
[2024-06-20 21:41:07] NAME="CentOS Linux"
[2024-06-20 21:41:07] VERSION="7 (Core)"
[2024-06-20 21:41:07] ID="centos"
[2024-06-20 21:41:07] ID_LIKE="rhel fedora"
[2024-06-20 21:41:07] VERSION_ID="7"
[2024-06-20 21:41:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-20 21:41:07] ANSI_COLOR="0;31"
[2024-06-20 21:41:07] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-20 21:41:07] HOME_URL="https://www.centos.org/"
[2024-06-20 21:41:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-20 21:41:07] 
[2024-06-20 21:41:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-20 21:41:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-20 21:41:07] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-20 21:41:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-20 21:41:07] 
[2024-06-20 21:41:07] 2024-06-20 19:40:53,558 | INFO     | *************************************
[2024-06-20 21:41:07] 2024-06-20 19:40:54,061 | INFO     | executing command: df -mP /scratch/boinc/var/slot20/slots/1
[2024-06-20 21:41:07] 2024-06-20 19:40:54,085 | INFO     | sufficient remaining disk space (655466954752 B)
[2024-06-20 21:41:07] 2024-06-20 19:40:54,085 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-20 21:41:07] 2024-06-20 19:40:54,085 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-20 21:41:07] 2024-06-20 19:40:54,329 | INFO     | all payload control threads have been joined
[2024-06-20 21:41:07] 2024-06-20 19:40:54,454 | INFO     | found 0 job(s) in 20 queues
[2024-06-20 21:41:07] 2024-06-20 19:40:54,454 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-20 21:41:07] 2024-06-20 19:40:54,454 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-20 21:41:07] 2024-06-20 19:40:54,464 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-20 21:41:07] 2024-06-20 19:40:54,464 | INFO     | aborting loop
[2024-06-20 21:41:07] 2024-06-20 19:40:54,800 | INFO     | all data control threads have been joined
[2024-06-20 21:41:07] 2024-06-20 19:40:55,090 | INFO     | [job] retrieve thread has finished
[2024-06-20 21:41:07] 2024-06-20 19:40:55,259 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-20 21:41:07] 2024-06-20 19:40:55,334 | INFO     | [payload] control thread has finished
[2024-06-20 21:41:07] 2024-06-20 19:40:55,413 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-20 21:41:07] 2024-06-20 19:40:55,440 | INFO     | [payload] validate_pre thread has finished
[2024-06-20 21:41:07] 2024-06-20 19:40:55,441 | INFO     | [job] create_data_payload thread has finished
[2024-06-20 21:41:07] 2024-06-20 19:40:55,443 | INFO     | [data] copytool_in thread has finished
[2024-06-20 21:41:07] 2024-06-20 19:40:55,469 | INFO     | [job] job monitor thread has finished
[2024-06-20 21:41:07] 2024-06-20 19:40:55,494 | INFO     | all job control threads have been joined
[2024-06-20 21:41:07] 2024-06-20 19:40:55,531 | INFO     | [payload] failed_post thread has finished
[2024-06-20 21:41:07] 2024-06-20 19:40:55,805 | INFO     | [data] control thread has finished
[2024-06-20 21:41:07] 2024-06-20 19:40:55,912 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-20 21:41:07] 2024-06-20 19:40:56,210 | INFO     | [job] validate thread has finished
[2024-06-20 21:41:07] 2024-06-20 19:40:56,265 | INFO     | [payload] validate_post thread has finished
[2024-06-20 21:41:07] 2024-06-20 19:40:56,340 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-20 21:41:07] 2024-06-20 19:40:56,447 | INFO     | [payload] execute_payloads thread has finished
[2024-06-20 21:41:07] 2024-06-20 19:40:56,499 | INFO     | [job] control thread has finished
[2024-06-20 21:41:07] 2024-06-20 19:40:56,917 | INFO     | [job] queue monitor thread has finished
[2024-06-20 21:41:07] 2024-06-20 19:40:57,418 | INFO     | [data] copytool_out thread has finished
[2024-06-20 21:41:07] 2024-06-20 19:41:00,345 | INFO     | [data] queue_monitor thread has finished
[2024-06-20 21:41:07] 2024-06-20 19:41:01,824 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47928478647360)>', '<ExcThread(monitor, started 47928661022464)>']
[2024-06-20 21:41:07] 2024-06-20 19:41:02,492 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-20 21:41:07] 2024-06-20 19:41:02,492 | INFO     | [monitor] control thread has ended
[2024-06-20 21:41:07] 2024-06-20 19:41:06,849 | INFO     | all workflow threads have been joined
[2024-06-20 21:41:07] 2024-06-20 19:41:06,849 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-20 21:41:07] 2024-06-20 19:41:06,849 | INFO     | traces error code: 0
[2024-06-20 21:41:07] 2024-06-20 19:41:06,850 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-20 21:41:07] 2024-06-20 19:41:06,962 [wrapper] ==== pilot stdout END ====
[2024-06-20 21:41:07] 2024-06-20 19:41:06,965 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-20 21:41:07] 2024-06-20 19:41:06,971 [wrapper] pilotpid: 290608
[2024-06-20 21:41:07] 2024-06-20 19:41:06,973 [wrapper] Pilot exit status: 0
[2024-06-20 21:41:07] 2024-06-20 19:41:06,996 [wrapper] pandaids: 6238851024
[2024-06-20 21:41:07] 2024-06-20 19:41:07,057 [wrapper] cleanup supervisor_pilot  850782 290609
[2024-06-20 21:41:07] 2024-06-20 19:41:07,060 [wrapper] Test setup, not cleaning
[2024-06-20 21:41:07] 2024-06-20 19:41:07,062 [wrapper] ==== wrapper stdout END ====
[2024-06-20 21:41:07] 2024-06-20 19:41:07,064 [wrapper] ==== wrapper stderr END ====
[2024-06-20 21:41:07] 2024-06-20 19:41:07,068 [wrapper] apfmon messages muted
[2024-06-20 21:41:07]  *** Error codes and diagnostics ***
[2024-06-20 21:41:07]     "exeErrorCode": 0,
[2024-06-20 21:41:07]     "exeErrorDiag": "",
[2024-06-20 21:41:07]     "pilotErrorCode": 0,
[2024-06-20 21:41:07]     "pilotErrorDiag": "",
[2024-06-20 21:41:07]  *** Listing of results directory ***
[2024-06-20 21:41:07] total 866820
[2024-06-20 21:41:07] -rw-r--r-- 1 boinc boinc    469766 Jun 20 13:59 pilot3.tar.gz
[2024-06-20 21:41:07] -rw-r--r-- 1 boinc boinc      5654 Jun 20 14:15 queuedata.json
[2024-06-20 21:41:07] -rwx------ 1 boinc boinc     32308 Jun 20 14:17 runpilot2-wrapper.sh
[2024-06-20 21:41:07] -rw-r--r-- 1 boinc boinc       100 Jun 20 17:25 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-20 21:41:07] -rwxr-xr-x 1 boinc boinc      7986 Jun 20 17:25 run_atlas
[2024-06-20 21:41:07] -rw-r--r-- 1 boinc boinc       105 Jun 20 17:25 job.xml
[2024-06-20 21:41:07] -rw-r--r-- 1 boinc boinc      6661 Jun 20 17:26 init_data.xml
[2024-06-20 21:41:07] -rw-r--r-- 2 boinc boinc 612546211 Jun 20 17:26 EVNT.40024038._000009.pool.root.1
[2024-06-20 21:41:07] -rw-r--r-- 2 boinc boinc     17537 Jun 20 17:26 start_atlas.sh
[2024-06-20 21:41:07] drwxrwx--x 2 boinc boinc      4096 Jun 20 17:26 shared
[2024-06-20 21:41:07] -rw-r--r-- 2 boinc boinc    482469 Jun 20 17:26 input.tar.gz
[2024-06-20 21:41:07] -rw-r--r-- 1 boinc boinc         0 Jun 20 17:26 boinc_lockfile
[2024-06-20 21:41:07] -rw-r--r-- 1 boinc boinc      2487 Jun 20 17:26 pandaJob.out
[2024-06-20 21:41:07] -rw------- 1 boinc boinc       424 Jun 20 17:26 setup.sh.local
[2024-06-20 21:41:07] -rw------- 1 boinc boinc   1015545 Jun 20 17:26 agis_schedconf.cvmfs.json
[2024-06-20 21:41:07] -rw------- 1 boinc boinc   1321254 Jun 20 17:26 cric_ddmendpoints.json
[2024-06-20 21:41:07] drwx------ 4 boinc boinc      4096 Jun 20 17:26 pilot3
[2024-06-20 21:41:07] -rw-r--r-- 1 boinc boinc       532 Jun 20 21:40 boinc_task_state.xml
[2024-06-20 21:41:07] -rw------- 1 boinc boinc 267746709 Jun 20 21:40 HITS.40024040._000245.pool.root.1
[2024-06-20 21:41:07] -rw------- 1 boinc boinc      1047 Jun 20 21:40 memory_monitor_summary.json
[2024-06-20 21:41:07] -rw------- 1 boinc boinc         0 Jun 20 21:40 agis_ddmendpoints.agis.ALL.json
[2024-06-20 21:41:07] -rw------- 1 boinc boinc    359404 Jun 20 21:40 log.40024040._000245.job.log.tgz.1
[2024-06-20 21:41:07] -rw------- 1 boinc boinc        95 Jun 20 21:40 pilot_heartbeat.json
[2024-06-20 21:41:07] -rw------- 1 boinc boinc      7760 Jun 20 21:40 heartbeat.json
[2024-06-20 21:41:07] -rw-r--r-- 1 boinc boinc        28 Jun 20 21:41 wrapper_checkpoint.txt
[2024-06-20 21:41:07] -rw-r--r-- 1 boinc boinc      8192 Jun 20 21:41 boinc_mmap_file
[2024-06-20 21:41:07] -rw------- 1 boinc boinc      4221 Jun 20 21:41 pilotlog.txt
[2024-06-20 21:41:07] -rw------- 1 boinc boinc   1542778 Jun 20 21:41 log.40024040._000245.job.log.1
[2024-06-20 21:41:07] -rw------- 1 boinc boinc       357 Jun 20 21:41 output.list
[2024-06-20 21:41:07] -rw-r--r-- 1 boinc boinc       620 Jun 20 21:41 runtime_log
[2024-06-20 21:41:07] -rw------- 1 boinc boinc   1925120 Jun 20 21:41 result.tar.gz
[2024-06-20 21:41:07] -rw-r--r-- 1 boinc boinc     11410 Jun 20 21:41 runtime_log.err
[2024-06-20 21:41:07] -rw------- 1 boinc boinc       659 Jun 20 21:41 RqZNDm2tVe5n7Olcko1bjSoqABFKDmABFKDmOtvXDmwlqKDm10mJBn.diag
[2024-06-20 21:41:07] -rw-r--r-- 1 boinc boinc     21273 Jun 20 21:41 stderr.txt
[2024-06-20 21:41:07] HITS file was successfully produced:
[2024-06-20 21:41:07] -rw------- 1 boinc boinc 267746709 Jun 20 21:40 shared/HITS.pool.root.1
[2024-06-20 21:41:07]  *** Contents of shared directory: ***
[2024-06-20 21:41:07] total 862044
[2024-06-20 21:41:07] -rw-r--r-- 2 boinc boinc 612546211 Jun 20 17:26 ATLAS.root_0
[2024-06-20 21:41:07] -rw-r--r-- 2 boinc boinc     17537 Jun 20 17:26 start_atlas.sh
[2024-06-20 21:41:07] -rw-r--r-- 2 boinc boinc    482469 Jun 20 17:26 input.tar.gz
[2024-06-20 21:41:07] -rw------- 1 boinc boinc 267746709 Jun 20 21:40 HITS.pool.root.1
[2024-06-20 21:41:07] -rw------- 1 boinc boinc   1925120 Jun 20 21:41 result.tar.gz
21:41:09 (286047): run_atlas exited; CPU time 57343.024182
21:41:09 (286047): called boinc_finish(0)

</stderr_txt>
]]>

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