Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:55:45 (880945): wrapper (7.7.26015): starting
02:55:45 (880945): wrapper: running run_atlas (--nthreads 4)
[2024-06-22 02:55:45] Arguments: --nthreads 4
[2024-06-22 02:55:45] Threads: 4
[2024-06-22 02:55:45] Checking for CVMFS
[2024-06-22 02:55:45] No cvmfs_config command found, will try listing directly
[2024-06-22 02:55:45] CVMFS is ok
[2024-06-22 02:55:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-22 02:55:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-22 02:55:45] Further information can be found at the LHC@home message board.
[2024-06-22 02:55:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-22 02:55:45] Checking for apptainer binary...
[2024-06-22 02:55:45] which: no apptainer in ((null))
[2024-06-22 02:55:45] apptainer is not installed, using version from CVMFS
[2024-06-22 02:55:45] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-22 02:55:46] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot16/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut05.grid.cesnet.cz
[2024-06-22 02:55:46] apptainer works
[2024-06-22 02:55:46] Set ATHENA_PROC_NUMBER=4
[2024-06-22 02:55:46] Set ATHENA_CORE_NUMBER=4
[2024-06-22 02:55:46] Starting ATLAS job with PandaID=6238842779
[2024-06-22 02:55:46] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot16/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-22 07:24:54]  *** The last 200 lines of the pilot log: ***
[2024-06-22 07:24:54] 2024-06-22 05:24:38,537 | WARNING  | GPU info not found in prmon json
[2024-06-22 07:24:54] 2024-06-22 05:24:38,537 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-06-22 07:24:54] 2024-06-22 05:24:38,537 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-06-22 07:24:54] 2024-06-22 05:24:38,540 | INFO     | fitting pss+swap vs Time
[2024-06-22 07:24:54] 2024-06-22 05:24:38,540 | INFO     | model: linear, x: [1719017802.0, 1719017863.0, 1719017924.0, 1719017985.0, 1719018046.0, 1719018107.0, 1719018168.0, 1719018229.0, 1719018290.0, 1719018351.0, 1719
[2024-06-22 07:24:54] 2024-06-22 05:24:38,540 | INFO     | sum of square deviations: 5705372090.0
[2024-06-22 07:24:54] 2024-06-22 05:24:38,542 | INFO     | sum of deviations: 93443925918.0
[2024-06-22 07:24:54] 2024-06-22 05:24:38,542 | INFO     | mean x: 1719025823.5
[2024-06-22 07:24:54] 2024-06-22 05:24:38,542 | INFO     | mean y: 2313011.8333333335
[2024-06-22 07:24:54] 2024-06-22 05:24:38,542 | INFO     | -- intersect: -28152296217.564526
[2024-06-22 07:24:54] 2024-06-22 05:24:38,542 | INFO     | intersect: -28152296217.564526
[2024-06-22 07:24:54] 2024-06-22 05:24:38,542 | INFO     | chi2: 3.9625709177091952
[2024-06-22 07:24:54] 2024-06-22 05:24:38,542 | INFO     | model: linear, x: [1719017802.0, 1719017863.0, 1719017924.0, 1719017985.0, 1719018046.0, 1719018107.0, 1719018168.0, 1719018229.0, 1719018290.0, 1719018351.0, 1719
[2024-06-22 07:24:54] 2024-06-22 05:24:38,542 | INFO     | sum of square deviations: 5387301010.0
[2024-06-22 07:24:54] 2024-06-22 05:24:38,543 | INFO     | sum of deviations: 107535296310.0
[2024-06-22 07:24:54] 2024-06-22 05:24:38,543 | INFO     | mean x: 1719025671.0
[2024-06-22 07:24:54] 2024-06-22 05:24:38,543 | INFO     | mean y: 2319647.019305019
[2024-06-22 07:24:54] 2024-06-22 05:24:38,544 | INFO     | -- intersect: -34310954207.98691
[2024-06-22 07:24:54] 2024-06-22 05:24:38,544 | INFO     | intersect: -34310954207.98691
[2024-06-22 07:24:54] 2024-06-22 05:24:38,544 | INFO     | chi2: 3.217698224351074
[2024-06-22 07:24:54] 2024-06-22 05:24:38,544 | INFO     | current chi2=3.217698224351074 (change=18.797712617058725 %)
[2024-06-22 07:24:54] 2024-06-22 05:24:38,544 | INFO     | right removable region: 258
[2024-06-22 07:24:54] 2024-06-22 05:24:38,544 | INFO     | model: linear, x: [1719018107.0, 1719018168.0, 1719018229.0, 1719018290.0, 1719018351.0, 1719018412.0, 1719018473.0, 1719018534.0, 1719018595.0, 1719018656.0, 1719
[2024-06-22 07:24:54] 2024-06-22 05:24:38,544 | INFO     | sum of square deviations: 5387301010.0
[2024-06-22 07:24:54] 2024-06-22 05:24:38,545 | INFO     | sum of deviations: 37426886902.999985
[2024-06-22 07:24:54] 2024-06-22 05:24:38,545 | INFO     | mean x: 1719025976.0
[2024-06-22 07:24:54] 2024-06-22 05:24:38,545 | INFO     | mean y: 2339792.7915057917
[2024-06-22 07:24:54] 2024-06-22 05:24:38,545 | INFO     | -- intersect: -11940150643.077265
[2024-06-22 07:24:54] 2024-06-22 05:24:38,545 | INFO     | intersect: -11940150643.077265
[2024-06-22 07:24:54] 2024-06-22 05:24:38,546 | INFO     | chi2: 1.8906971162433108
[2024-06-22 07:24:54] 2024-06-22 05:24:38,546 | INFO     | current chi2=1.8906971162433108 (change=52.286100223630996 %)
[2024-06-22 07:24:54] 2024-06-22 05:24:38,546 | INFO     | model: linear, x: [1719018412.0, 1719018473.0, 1719018534.0, 1719018595.0, 1719018656.0, 1719018717.0, 1719018778.0, 1719018839.0, 1719018900.0, 1719018961.0, 1719
[2024-06-22 07:24:54] 2024-06-22 05:24:38,546 | INFO     | sum of square deviations: 5081276667.5
[2024-06-22 07:24:54] 2024-06-22 05:24:38,547 | INFO     | sum of deviations: -5346657777.5
[2024-06-22 07:24:54] 2024-06-22 05:24:38,547 | INFO     | mean x: 1719026128.5
[2024-06-22 07:24:54] 2024-06-22 05:24:38,547 | INFO     | mean y: 2361113.7992125982
[2024-06-22 07:24:54] 2024-06-22 05:24:38,547 | INFO     | -- intersect: 1811167250.7404344
[2024-06-22 07:24:54] 2024-06-22 05:24:38,547 | INFO     | intersect: 1811167250.7404344
[2024-06-22 07:24:54] 2024-06-22 05:24:38,547 | INFO     | chi2: 0.8200398085391416
[2024-06-22 07:24:54] 2024-06-22 05:24:38,548 | INFO     | current chi2=0.8200398085391416 (change=56.627647998506184 %)
[2024-06-22 07:24:54] 2024-06-22 05:24:38,548 | INFO     | model: linear, x: [1719018717.0, 1719018778.0, 1719018839.0, 1719018900.0, 1719018961.0, 1719019022.0, 1719019083.0, 1719019144.0, 1719019205.0, 1719019266.0, 1719
[2024-06-22 07:24:54] 2024-06-22 05:24:38,548 | INFO     | sum of square deviations: 4787066500.0
[2024-06-22 07:24:54] 2024-06-22 05:24:38,549 | INFO     | sum of deviations: -8785370060.0
[2024-06-22 07:24:54] 2024-06-22 05:24:38,549 | INFO     | mean x: 1719026281.0
[2024-06-22 07:24:54] 2024-06-22 05:24:38,549 | INFO     | mean y: 2362859.6546184737
[2024-06-22 07:24:54] 2024-06-22 05:24:38,549 | INFO     | -- intersect: 3157172182.1176643
[2024-06-22 07:24:54] 2024-06-22 05:24:38,549 | INFO     | intersect: 3157172182.1176643
[2024-06-22 07:24:54] 2024-06-22 05:24:38,549 | INFO     | chi2: 0.7829192748855648
[2024-06-22 07:24:54] 2024-06-22 05:24:38,549 | INFO     | current chi2=0.7829192748855648 (change=4.526674591530516 %)
[2024-06-22 07:24:54] 2024-06-22 05:24:38,549 | INFO     | left removable region: 30
[2024-06-22 07:24:54] 2024-06-22 05:24:38,550 | INFO     | model: linear, x: [1719019632.0, 1719019693.0, 1719019754.0, 1719019815.0, 1719019876.0, 1719019937.0, 1719019998.0, 1719020059.0, 1719020120.0, 1719020181.0, 1719
[2024-06-22 07:24:54] 2024-06-22 05:24:38,550 | INFO     | sum of square deviations: 3675146117.0
[2024-06-22 07:24:54] 2024-06-22 05:24:38,550 | INFO     | sum of deviations: 8711299864.500004
[2024-06-22 07:24:54] 2024-06-22 05:24:38,550 | INFO     | mean x: 1719026555.5
[2024-06-22 07:24:54] 2024-06-22 05:24:38,551 | INFO     | mean y: 2369548.9692982454
[2024-06-22 07:24:54] 2024-06-22 05:24:38,551 | INFO     | -- intersect: -4072286348.5826135
[2024-06-22 07:24:54] 2024-06-22 05:24:38,551 | INFO     | intersect: -4072286348.5826135
[2024-06-22 07:24:54] 2024-06-22 05:24:38,551 | INFO     | chi2: 0.00044008846070430787
[2024-06-22 07:24:54] 2024-06-22 05:24:38,551 | INFO     | -- intersect: -4072286348.5826135
[2024-06-22 07:24:54] 2024-06-22 05:24:38,551 | INFO     | current memory leak: 2.37 B/s (using 228 data points, chi2=0.00)
[2024-06-22 07:24:54] 2024-06-22 05:24:38,551 | INFO     | ..............................
[2024-06-22 07:24:54] 2024-06-22 05:24:38,551 | INFO     | . Timing measurements:
[2024-06-22 07:24:54] 2024-06-22 05:24:38,551 | INFO     | . get job = 0 s
[2024-06-22 07:24:54] 2024-06-22 05:24:38,552 | INFO     | . initial setup = 1 s
[2024-06-22 07:24:54] 2024-06-22 05:24:38,552 | INFO     | . payload setup = 9 s
[2024-06-22 07:24:54] 2024-06-22 05:24:38,552 | INFO     | . stage-in = 0 s
[2024-06-22 07:24:54] 2024-06-22 05:24:38,552 | INFO     | . payload execution = 16070 s
[2024-06-22 07:24:54] 2024-06-22 05:24:38,552 | INFO     | . stage-out = 1 s
[2024-06-22 07:24:54] 2024-06-22 05:24:38,552 | INFO     | . log creation = 0 s
[2024-06-22 07:24:54] 2024-06-22 05:24:38,552 | INFO     | ..............................
[2024-06-22 07:24:54] 2024-06-22 05:24:38,607 | INFO     | 
[2024-06-22 07:24:54] 2024-06-22 05:24:38,607 | INFO     | job summary report
[2024-06-22 07:24:54] 2024-06-22 05:24:38,607 | INFO     | --------------------------------------------------
[2024-06-22 07:24:54] 2024-06-22 05:24:38,607 | INFO     | PanDA job id: 6238842779
[2024-06-22 07:24:54] 2024-06-22 05:24:38,607 | INFO     | task id: 40024049
[2024-06-22 07:24:54] 2024-06-22 05:24:38,607 | INFO     | errors: (none)
[2024-06-22 07:24:54] 2024-06-22 05:24:38,607 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-22 07:24:54] 2024-06-22 05:24:38,607 | INFO     | pilot state: finished 
[2024-06-22 07:24:54] 2024-06-22 05:24:38,607 | INFO     | transexitcode: 0
[2024-06-22 07:24:54] 2024-06-22 05:24:38,608 | INFO     | exeerrorcode: 0
[2024-06-22 07:24:54] 2024-06-22 05:24:38,608 | INFO     | exeerrordiag: 
[2024-06-22 07:24:54] 2024-06-22 05:24:38,608 | INFO     | exitcode: 0
[2024-06-22 07:24:54] 2024-06-22 05:24:38,608 | INFO     | exitmsg: OK
[2024-06-22 07:24:54] 2024-06-22 05:24:38,608 | INFO     | cpuconsumptiontime: 61059 s
[2024-06-22 07:24:54] 2024-06-22 05:24:38,608 | INFO     | nevents: 400
[2024-06-22 07:24:54] 2024-06-22 05:24:38,608 | INFO     | neventsw: 0
[2024-06-22 07:24:54] 2024-06-22 05:24:38,608 | INFO     | pid: 892498
[2024-06-22 07:24:54] 2024-06-22 05:24:38,608 | INFO     | pgrp: 892498
[2024-06-22 07:24:54] 2024-06-22 05:24:38,608 | INFO     | corecount: 4
[2024-06-22 07:24:54] 2024-06-22 05:24:38,608 | INFO     | event service: False
[2024-06-22 07:24:54] 2024-06-22 05:24:38,608 | INFO     | sizes: {0: 2386764, 1: 2386906, 6: 2387112, 11: 2387140, 16083: 2418437, 16085: 2427603, 16094: 2427717}
[2024-06-22 07:24:54] 2024-06-22 05:24:38,608 | INFO     | --------------------------------------------------
[2024-06-22 07:24:54] 2024-06-22 05:24:38,608 | INFO     | 
[2024-06-22 07:24:54] 2024-06-22 05:24:38,609 | INFO     | executing command: ls -lF /scratch/boinc/var/slot16/slots/1
[2024-06-22 07:24:54] 2024-06-22 05:24:38,634 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-22 07:24:54] 2024-06-22 05:24:38,634 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-22 07:24:54] 2024-06-22 05:24:38,634 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-22 07:24:54] 2024-06-22 05:24:38,634 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-22 07:24:54] 2024-06-22 05:24:38,634 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-22 07:24:54] 2024-06-22 05:24:38,634 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-22 07:24:54] 2024-06-22 05:24:38,634 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-22 07:24:54] 2024-06-22 05:24:38,634 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-22 07:24:54] 2024-06-22 05:24:38,635 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-22 07:24:54] 2024-06-22 05:24:38,635 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-22 07:24:54] 2024-06-22 05:24:38,635 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-22 07:24:54] 2024-06-22 05:24:38,635 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-22 07:24:54] 2024-06-22 05:24:38,635 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-22 07:24:54] 2024-06-22 05:24:38,635 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-22 07:24:54] 2024-06-22 05:24:38,635 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-22 07:24:54] 2024-06-22 05:24:38,635 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-22 07:24:54] 2024-06-22 05:24:38,635 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-22 07:24:54] 2024-06-22 05:24:38,635 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-22 07:24:54] 2024-06-22 05:24:38,635 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-22 07:24:54] 2024-06-22 05:24:38,635 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-22 07:24:54] 2024-06-22 05:24:38,635 | INFO     | job 6238842779 has completed (purged errors)
[2024-06-22 07:24:54] 2024-06-22 05:24:38,635 | INFO     | overall cleanup function is called
[2024-06-22 07:24:54] 2024-06-22 05:24:39,642 | INFO     | --- collectZombieJob: --- 10, [892498]
[2024-06-22 07:24:54] 2024-06-22 05:24:39,642 | INFO     | zombie collector waiting for pid 892498
[2024-06-22 07:24:54] 2024-06-22 05:24:39,642 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-22 07:24:54] 2024-06-22 05:24:40,647 | INFO     | collected zombie processes
[2024-06-22 07:24:54] 2024-06-22 05:24:40,647 | INFO     | will now attempt to kill all subprocesses of pid=892498
[2024-06-22 07:24:54] 2024-06-22 05:24:40,843 | INFO     | process IDs to be killed: [892498] (in reverse order)
[2024-06-22 07:24:54] 2024-06-22 05:24:40,959 | WARNING  | found no corresponding commands to process id(s)
[2024-06-22 07:24:54] 2024-06-22 05:24:40,959 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-22 07:24:54] 2024-06-22 05:24:40,966 | INFO     | did not find any defunct processes belonging to 892498
[2024-06-22 07:24:54] 2024-06-22 05:24:40,972 | INFO     | did not find any defunct processes belonging to 892498
[2024-06-22 07:24:54] 2024-06-22 05:24:40,972 | INFO     | ready for new job
[2024-06-22 07:24:54] 2024-06-22 05:24:40,972 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-22 07:24:54] 2024-06-22 05:24:40,974 | INFO     | *************************************
[2024-06-22 07:24:54] 2024-06-22 05:24:40,974 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-22 07:24:54] 2024-06-22 05:24:40,974 | INFO     | *************************************
[2024-06-22 07:24:54] 2024-06-22 05:24:40,974 | INFO     | 
[2024-06-22 07:24:54] 2024-06-22 05:24:40,977 | INFO     | architecture information:
[2024-06-22 07:24:54] 2024-06-22 05:24:40,977 | INFO     | executing command: cat /etc/os-release
[2024-06-22 07:24:54] 2024-06-22 05:24:40,991 | INFO     | cat /etc/os-release:
[2024-06-22 07:24:54] NAME="CentOS Linux"
[2024-06-22 07:24:54] VERSION="7 (Core)"
[2024-06-22 07:24:54] ID="centos"
[2024-06-22 07:24:54] ID_LIKE="rhel fedora"
[2024-06-22 07:24:54] VERSION_ID="7"
[2024-06-22 07:24:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-22 07:24:54] ANSI_COLOR="0;31"
[2024-06-22 07:24:54] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-22 07:24:54] HOME_URL="https://www.centos.org/"
[2024-06-22 07:24:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-22 07:24:54] 
[2024-06-22 07:24:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-22 07:24:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-22 07:24:54] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-22 07:24:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-22 07:24:54] 
[2024-06-22 07:24:54] 2024-06-22 05:24:40,992 | INFO     | *************************************
[2024-06-22 07:24:54] 2024-06-22 05:24:41,494 | INFO     | executing command: df -mP /scratch/boinc/var/slot16/slots/1
[2024-06-22 07:24:54] 2024-06-22 05:24:41,514 | INFO     | sufficient remaining disk space (650280697856 B)
[2024-06-22 07:24:54] 2024-06-22 05:24:41,514 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-22 07:24:54] 2024-06-22 05:24:41,514 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-22 07:24:54] 2024-06-22 05:24:41,968 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-22 07:24:54] 2024-06-22 05:24:41,968 | INFO     | aborting loop
[2024-06-22 07:24:54] 2024-06-22 05:24:42,114 | INFO     | all data control threads have been joined
[2024-06-22 07:24:54] 2024-06-22 05:24:42,366 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-22 07:24:54] 2024-06-22 05:24:42,491 | INFO     | found 0 job(s) in 20 queues
[2024-06-22 07:24:54] 2024-06-22 05:24:42,491 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-22 07:24:54] 2024-06-22 05:24:42,491 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-22 07:24:54] 2024-06-22 05:24:42,501 | INFO     | all payload control threads have been joined
[2024-06-22 07:24:54] 2024-06-22 05:24:42,519 | INFO     | [job] retrieve thread has finished
[2024-06-22 07:24:54] 2024-06-22 05:24:42,520 | INFO     | all job control threads have been joined
[2024-06-22 07:24:54] 2024-06-22 05:24:42,731 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-22 07:24:54] 2024-06-22 05:24:42,748 | INFO     | [payload] validate_post thread has finished
[2024-06-22 07:24:54] 2024-06-22 05:24:42,750 | INFO     | [job] validate thread has finished
[2024-06-22 07:24:54] 2024-06-22 05:24:42,780 | INFO     | [payload] validate_pre thread has finished
[2024-06-22 07:24:54] 2024-06-22 05:24:42,793 | INFO     | [job] create_data_payload thread has finished
[2024-06-22 07:24:54] 2024-06-22 05:24:42,936 | INFO     | [payload] failed_post thread has finished
[2024-06-22 07:24:54] 2024-06-22 05:24:42,973 | INFO     | [job] job monitor thread has finished
[2024-06-22 07:24:54] 2024-06-22 05:24:43,119 | INFO     | [data] control thread has finished
[2024-06-22 07:24:54] 2024-06-22 05:24:43,286 | INFO     | [payload] execute_payloads thread has finished
[2024-06-22 07:24:54] 2024-06-22 05:24:43,507 | INFO     | [payload] control thread has finished
[2024-06-22 07:24:54] 2024-06-22 05:24:43,525 | INFO     | [job] control thread has finished
[2024-06-22 07:24:54] 2024-06-22 05:24:43,616 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-22 07:24:54] 2024-06-22 05:24:43,919 | INFO     | [data] copytool_in thread has finished
[2024-06-22 07:24:54] 2024-06-22 05:24:44,371 | INFO     | [data] copytool_out thread has finished
[2024-06-22 07:24:54] 2024-06-22 05:24:44,431 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-22 07:24:54] 2024-06-22 05:24:44,618 | INFO     | [job] queue monitor thread has finished
[2024-06-22 07:24:54] 2024-06-22 05:24:48,437 | INFO     | [data] queue_monitor thread has finished
[2024-06-22 07:24:54] 2024-06-22 05:24:48,442 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47314193347648)>', '<ExcThread(monitor, started 47314582398720)>']
[2024-06-22 07:24:54] 2024-06-22 05:24:48,516 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-22 07:24:54] 2024-06-22 05:24:48,516 | INFO     | [monitor] control thread has ended
[2024-06-22 07:24:54] 2024-06-22 05:24:53,467 | INFO     | all workflow threads have been joined
[2024-06-22 07:24:54] 2024-06-22 05:24:53,467 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-22 07:24:54] 2024-06-22 05:24:53,467 | INFO     | traces error code: 0
[2024-06-22 07:24:54] 2024-06-22 05:24:53,467 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-22 07:24:54] 2024-06-22 05:24:53,587 [wrapper] ==== pilot stdout END ====
[2024-06-22 07:24:54] 2024-06-22 05:24:53,590 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-22 07:24:54] 2024-06-22 05:24:53,592 [wrapper] pilotpid: 885423
[2024-06-22 07:24:54] 2024-06-22 05:24:53,594 [wrapper] Pilot exit status: 0
[2024-06-22 07:24:54] 2024-06-22 05:24:53,611 [wrapper] pandaids: 6238842779
[2024-06-22 07:24:54] 2024-06-22 05:24:53,694 [wrapper] cleanup supervisor_pilot 1498700 885424
[2024-06-22 07:24:54] 2024-06-22 05:24:53,697 [wrapper] Test setup, not cleaning
[2024-06-22 07:24:54] 2024-06-22 05:24:53,699 [wrapper] ==== wrapper stdout END ====
[2024-06-22 07:24:54] 2024-06-22 05:24:53,702 [wrapper] ==== wrapper stderr END ====
[2024-06-22 07:24:54] 2024-06-22 05:24:53,707 [wrapper] apfmon messages muted
[2024-06-22 07:24:54]  *** Error codes and diagnostics ***
[2024-06-22 07:24:54]     "exeErrorCode": 0,
[2024-06-22 07:24:54]     "exeErrorDiag": "",
[2024-06-22 07:24:54]     "pilotErrorCode": 0,
[2024-06-22 07:24:54]     "pilotErrorDiag": "",
[2024-06-22 07:24:54]  *** Listing of results directory ***
[2024-06-22 07:24:54] total 870696
[2024-06-22 07:24:54] -rw-r--r-- 1 boinc boinc    469766 Jun 20 13:33 pilot3.tar.gz
[2024-06-22 07:24:54] -rw-r--r-- 1 boinc boinc      5654 Jun 20 13:47 queuedata.json
[2024-06-22 07:24:54] -rwx------ 1 boinc boinc     32308 Jun 20 13:47 runpilot2-wrapper.sh
[2024-06-22 07:24:54] -rw-r--r-- 1 boinc boinc       100 Jun 22 02:55 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-22 07:24:54] -rwxr-xr-x 1 boinc boinc      7986 Jun 22 02:55 run_atlas
[2024-06-22 07:24:54] -rw-r--r-- 1 boinc boinc       105 Jun 22 02:55 job.xml
[2024-06-22 07:24:54] -rw-r--r-- 2 boinc boinc    482476 Jun 22 02:55 input.tar.gz
[2024-06-22 07:24:54] -rw-r--r-- 1 boinc boinc      6661 Jun 22 02:55 init_data.xml
[2024-06-22 07:24:54] -rw-r--r-- 2 boinc boinc 615502382 Jun 22 02:55 EVNT.40024047._000021.pool.root.1
[2024-06-22 07:24:54] -rw-r--r-- 2 boinc boinc     17537 Jun 22 02:55 start_atlas.sh
[2024-06-22 07:24:54] drwxrwx--x 2 boinc boinc      4096 Jun 22 02:55 shared
[2024-06-22 07:24:54] -rw-r--r-- 1 boinc boinc         0 Jun 22 02:55 boinc_lockfile
[2024-06-22 07:24:54] -rw-r--r-- 1 boinc boinc      2493 Jun 22 02:55 pandaJob.out
[2024-06-22 07:24:54] -rw------- 1 boinc boinc       424 Jun 22 02:55 setup.sh.local
[2024-06-22 07:24:54] -rw------- 1 boinc boinc   1025937 Jun 22 02:56 agis_schedconf.cvmfs.json
[2024-06-22 07:24:54] -rw------- 1 boinc boinc   1321363 Jun 22 02:56 cric_ddmendpoints.json
[2024-06-22 07:24:54] drwx------ 4 boinc boinc      4096 Jun 22 02:56 pilot3
[2024-06-22 07:24:54] -rw------- 1 boinc boinc 268488810 Jun 22 07:23 HITS.40024049._000213.pool.root.1
[2024-06-22 07:24:54] -rw------- 1 boinc boinc        95 Jun 22 07:23 pilot_heartbeat.json
[2024-06-22 07:24:54] -rw-r--r-- 1 boinc boinc       532 Jun 22 07:24 boinc_task_state.xml
[2024-06-22 07:24:54] -rw------- 1 boinc boinc      1048 Jun 22 07:24 memory_monitor_summary.json
[2024-06-22 07:24:54] -rw------- 1 boinc boinc         0 Jun 22 07:24 agis_ddmendpoints.agis.ALL.json
[2024-06-22 07:24:54] -rw------- 1 boinc boinc    360338 Jun 22 07:24 log.40024049._000213.job.log.tgz.1
[2024-06-22 07:24:54] -rw-r--r-- 1 boinc boinc      8192 Jun 22 07:24 boinc_mmap_file
[2024-06-22 07:24:54] -rw-r--r-- 1 boinc boinc        28 Jun 22 07:24 wrapper_checkpoint.txt
[2024-06-22 07:24:54] -rw------- 1 boinc boinc      7760 Jun 22 07:24 heartbeat.json
[2024-06-22 07:24:54] -rw------- 1 boinc boinc      4221 Jun 22 07:24 pilotlog.txt
[2024-06-22 07:24:54] -rw------- 1 boinc boinc   1671332 Jun 22 07:24 log.40024049._000213.job.log.1
[2024-06-22 07:24:54] -rw------- 1 boinc boinc       357 Jun 22 07:24 output.list
[2024-06-22 07:24:54] -rw-r--r-- 1 boinc boinc       620 Jun 22 07:24 runtime_log
[2024-06-22 07:24:54] -rw------- 1 boinc boinc   2048000 Jun 22 07:24 result.tar.gz
[2024-06-22 07:24:54] -rw------- 1 boinc boinc       659 Jun 22 07:24 zSgKDmpRVe5n9Rq4apOajLDm4fhM0noT9bVo2ijZDmaFXKDmJrXJAn.diag
[2024-06-22 07:24:54] -rw-r--r-- 1 boinc boinc     11410 Jun 22 07:24 runtime_log.err
[2024-06-22 07:24:54] -rw-r--r-- 1 boinc boinc     21256 Jun 22 07:24 stderr.txt
[2024-06-22 07:24:54] HITS file was successfully produced:
[2024-06-22 07:24:54] -rw------- 1 boinc boinc 268488810 Jun 22 07:23 shared/HITS.pool.root.1
[2024-06-22 07:24:54]  *** Contents of shared directory: ***
[2024-06-22 07:24:54] total 865780
[2024-06-22 07:24:54] -rw-r--r-- 2 boinc boinc    482476 Jun 22 02:55 input.tar.gz
[2024-06-22 07:24:54] -rw-r--r-- 2 boinc boinc 615502382 Jun 22 02:55 ATLAS.root_0
[2024-06-22 07:24:54] -rw-r--r-- 2 boinc boinc     17537 Jun 22 02:55 start_atlas.sh
[2024-06-22 07:24:54] -rw------- 1 boinc boinc 268488810 Jun 22 07:23 HITS.pool.root.1
[2024-06-22 07:24:54] -rw------- 1 boinc boinc   2048000 Jun 22 07:24 result.tar.gz
07:24:56 (880945): run_atlas exited; CPU time 60784.703416
07:24:56 (880945): called boinc_finish(0)

</stderr_txt>
]]>

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