Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:40:55 (41439): wrapper (7.7.26015): starting
21:40:55 (41439): wrapper: running run_atlas (--nthreads 4)
[2024-06-21 21:40:55] Arguments: --nthreads 4
[2024-06-21 21:40:55] Threads: 4
[2024-06-21 21:40:55] Checking for CVMFS
[2024-06-21 21:40:55] No cvmfs_config command found, will try listing directly
[2024-06-21 21:40:55] CVMFS is ok
[2024-06-21 21:40:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-21 21:40:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-21 21:40:55] Further information can be found at the LHC@home message board.
[2024-06-21 21:40:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-21 21:40:55] Checking for apptainer binary...
[2024-06-21 21:40:55] which: no apptainer in ((null))
[2024-06-21 21:40:55] apptainer is not installed, using version from CVMFS
[2024-06-21 21:40:55] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-21 21:40:56] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot32/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut06.grid.cesnet.cz
[2024-06-21 21:40:56] apptainer works
[2024-06-21 21:40:56] Set ATHENA_PROC_NUMBER=4
[2024-06-21 21:40:56] Set ATHENA_CORE_NUMBER=4
[2024-06-21 21:40:56] Starting ATLAS job with PandaID=6238842744
[2024-06-21 21:40:56] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot32/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-22 02:17:29]  *** The last 200 lines of the pilot log: ***
[2024-06-22 02:17:29] 2024-06-22 00:17:15,724 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-06-22 02:17:29] 2024-06-22 00:17:15,724 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-06-22 02:17:29] 2024-06-22 00:17:15,727 | INFO     | fitting pss+swap vs Time
[2024-06-22 02:17:29] 2024-06-22 00:17:15,727 | INFO     | model: linear, x: [1718998950.0, 1718999011.0, 1718999072.0, 1718999133.0, 1718999194.0, 1718999255.0, 1718999316.0, 1718999377.0, 1718999438.0, 1718999499.0, 1718
[2024-06-22 02:17:29] 2024-06-22 00:17:15,727 | INFO     | sum of square deviations: 6171352920.0
[2024-06-22 02:17:29] 2024-06-22 00:17:15,729 | INFO     | sum of deviations: 84343174877.99998
[2024-06-22 02:17:29] 2024-06-22 00:17:15,729 | INFO     | mean x: 1719007185.0
[2024-06-22 02:17:29] 2024-06-22 00:17:15,729 | INFO     | mean y: 2321237.3653136534
[2024-06-22 02:17:29] 2024-06-22 00:17:15,729 | INFO     | -- intersect: -23491153451.32474
[2024-06-22 02:17:29] 2024-06-22 00:17:15,729 | INFO     | intersect: -23491153451.32474
[2024-06-22 02:17:29] 2024-06-22 00:17:15,729 | INFO     | chi2: 4.53226062212981
[2024-06-22 02:17:29] 2024-06-22 00:17:15,729 | INFO     | model: linear, x: [1718998950.0, 1718999011.0, 1718999072.0, 1718999133.0, 1718999194.0, 1718999255.0, 1718999316.0, 1718999377.0, 1718999438.0, 1718999499.0, 1718
[2024-06-22 02:17:29] 2024-06-22 00:17:15,730 | INFO     | sum of square deviations: 5836025702.5
[2024-06-22 02:17:29] 2024-06-22 00:17:15,731 | INFO     | sum of deviations: 101795513662.49998
[2024-06-22 02:17:29] 2024-06-22 00:17:15,731 | INFO     | mean x: 1719007032.5
[2024-06-22 02:17:29] 2024-06-22 00:17:15,731 | INFO     | mean y: 2329043.0112781953
[2024-06-22 02:17:29] 2024-06-22 00:17:15,731 | INFO     | -- intersect: -29981638263.340263
[2024-06-22 02:17:29] 2024-06-22 00:17:15,731 | INFO     | intersect: -29981638263.340263
[2024-06-22 02:17:29] 2024-06-22 00:17:15,731 | INFO     | chi2: 3.5605307570507767
[2024-06-22 02:17:29] 2024-06-22 00:17:15,731 | INFO     | current chi2=3.5605307570507767 (change=21.44029097387598 %)
[2024-06-22 02:17:29] 2024-06-22 00:17:15,731 | INFO     | right removable region: 265
[2024-06-22 02:17:29] 2024-06-22 00:17:15,731 | INFO     | model: linear, x: [1718999255.0, 1718999316.0, 1718999377.0, 1718999438.0, 1718999499.0, 1718999560.0, 1718999621.0, 1718999682.0, 1718999743.0, 1718999804.0, 1718
[2024-06-22 02:17:29] 2024-06-22 00:17:15,731 | INFO     | sum of square deviations: 5836025702.5
[2024-06-22 02:17:29] 2024-06-22 00:17:15,733 | INFO     | sum of deviations: 26297261040.00002
[2024-06-22 02:17:29] 2024-06-22 00:17:15,733 | INFO     | mean x: 1719007337.5
[2024-06-22 02:17:29] 2024-06-22 00:17:15,733 | INFO     | mean y: 2347563.4360902254
[2024-06-22 02:17:29] 2024-06-22 00:17:15,733 | INFO     | -- intersect: -7743537562.55782
[2024-06-22 02:17:29] 2024-06-22 00:17:15,733 | INFO     | intersect: -7743537562.55782
[2024-06-22 02:17:29] 2024-06-22 00:17:15,733 | INFO     | chi2: 2.4101186264920385
[2024-06-22 02:17:29] 2024-06-22 00:17:15,733 | INFO     | current chi2=2.4101186264920385 (change=46.82303540259628 %)
[2024-06-22 02:17:29] 2024-06-22 00:17:15,733 | INFO     | model: linear, x: [1718999560.0, 1718999621.0, 1718999682.0, 1718999743.0, 1718999804.0, 1718999865.0, 1718999926.0, 1718999987.0, 1719000048.0, 1719000109.0, 1719
[2024-06-22 02:17:29] 2024-06-22 00:17:15,733 | INFO     | sum of square deviations: 5513070810.0
[2024-06-22 02:17:29] 2024-06-22 00:17:15,734 | INFO     | sum of deviations: -22239582032.000004
[2024-06-22 02:17:29] 2024-06-22 00:17:15,735 | INFO     | mean x: 1719007490.0
[2024-06-22 02:17:29] 2024-06-22 00:17:15,735 | INFO     | mean y: 2370485.509578544
[2024-06-22 02:17:29] 2024-06-22 00:17:15,735 | INFO     | -- intersect: 6936801296.398697
[2024-06-22 02:17:29] 2024-06-22 00:17:15,735 | INFO     | intersect: 6936801296.398697
[2024-06-22 02:17:29] 2024-06-22 00:17:15,735 | INFO     | chi2: 1.0855514351056426
[2024-06-22 02:17:29] 2024-06-22 00:17:15,735 | INFO     | current chi2=1.0855514351056426 (change=54.95858904315934 %)
[2024-06-22 02:17:29] 2024-06-22 00:17:15,735 | INFO     | model: linear, x: [1718999865.0, 1718999926.0, 1718999987.0, 1719000048.0, 1719000109.0, 1719000170.0, 1719000231.0, 1719000292.0, 1719000353.0, 1719000414.0, 1719
[2024-06-22 02:17:29] 2024-06-22 00:17:15,735 | INFO     | sum of square deviations: 5202255680.0
[2024-06-22 02:17:29] 2024-06-22 00:17:15,736 | INFO     | sum of deviations: -26260782796.0
[2024-06-22 02:17:29] 2024-06-22 00:17:15,736 | INFO     | mean x: 1719007642.5
[2024-06-22 02:17:29] 2024-06-22 00:17:15,736 | INFO     | mean y: 2372423.140625
[2024-06-22 02:17:29] 2024-06-22 00:17:15,737 | INFO     | -- intersect: 8679855634.491844
[2024-06-22 02:17:29] 2024-06-22 00:17:15,737 | INFO     | intersect: 8679855634.491844
[2024-06-22 02:17:29] 2024-06-22 00:17:15,737 | INFO     | chi2: 1.0427683561977275
[2024-06-22 02:17:29] 2024-06-22 00:17:15,737 | INFO     | current chi2=1.0427683561977275 (change=3.941137888482602 %)
[2024-06-22 02:17:29] 2024-06-22 00:17:15,737 | INFO     | left removable region: 30
[2024-06-22 02:17:29] 2024-06-22 00:17:15,737 | INFO     | model: linear, x: [1719000780.0, 1719000841.0, 1719000902.0, 1719000963.0, 1719001024.0, 1719001085.0, 1719001146.0, 1719001207.0, 1719001268.0, 1719001329.0, 1719
[2024-06-22 02:17:29] 2024-06-22 00:17:15,737 | INFO     | sum of square deviations: 4024149870.0
[2024-06-22 02:17:29] 2024-06-22 00:17:15,738 | INFO     | sum of deviations: 2497465477.0000005
[2024-06-22 02:17:29] 2024-06-22 00:17:15,738 | INFO     | mean x: 1719007917.0
[2024-06-22 02:17:29] 2024-06-22 00:17:15,738 | INFO     | mean y: 2375957.119148936
[2024-06-22 02:17:29] 2024-06-22 00:17:15,738 | INFO     | -- intersect: -1064473704.5703104
[2024-06-22 02:17:29] 2024-06-22 00:17:15,738 | INFO     | intersect: -1064473704.5703104
[2024-06-22 02:17:29] 2024-06-22 00:17:15,738 | INFO     | chi2: 0.0060633399963551105
[2024-06-22 02:17:29] 2024-06-22 00:17:15,738 | INFO     | -- intersect: -1064473704.5703104
[2024-06-22 02:17:29] 2024-06-22 00:17:15,739 | INFO     | current memory leak: 0.62 B/s (using 235 data points, chi2=0.01)
[2024-06-22 02:17:29] 2024-06-22 00:17:15,739 | INFO     | ..............................
[2024-06-22 02:17:29] 2024-06-22 00:17:15,739 | INFO     | . Timing measurements:
[2024-06-22 02:17:29] 2024-06-22 00:17:15,739 | INFO     | . get job = 0 s
[2024-06-22 02:17:29] 2024-06-22 00:17:15,739 | INFO     | . initial setup = 2 s
[2024-06-22 02:17:29] 2024-06-22 00:17:15,739 | INFO     | . payload setup = 9 s
[2024-06-22 02:17:29] 2024-06-22 00:17:15,739 | INFO     | . stage-in = 0 s
[2024-06-22 02:17:29] 2024-06-22 00:17:15,739 | INFO     | . payload execution = 16478 s
[2024-06-22 02:17:29] 2024-06-22 00:17:15,739 | INFO     | . stage-out = 0 s
[2024-06-22 02:17:29] 2024-06-22 00:17:15,739 | INFO     | . log creation = 0 s
[2024-06-22 02:17:29] 2024-06-22 00:17:15,739 | INFO     | ..............................
[2024-06-22 02:17:29] 2024-06-22 00:17:15,794 | INFO     | 
[2024-06-22 02:17:29] 2024-06-22 00:17:15,794 | INFO     | job summary report
[2024-06-22 02:17:29] 2024-06-22 00:17:15,795 | INFO     | --------------------------------------------------
[2024-06-22 02:17:29] 2024-06-22 00:17:15,795 | INFO     | PanDA job id: 6238842744
[2024-06-22 02:17:29] 2024-06-22 00:17:15,795 | INFO     | task id: 40024049
[2024-06-22 02:17:29] 2024-06-22 00:17:15,795 | INFO     | errors: (none)
[2024-06-22 02:17:29] 2024-06-22 00:17:15,795 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-22 02:17:29] 2024-06-22 00:17:15,795 | INFO     | pilot state: finished 
[2024-06-22 02:17:29] 2024-06-22 00:17:15,795 | INFO     | transexitcode: 0
[2024-06-22 02:17:29] 2024-06-22 00:17:15,795 | INFO     | exeerrorcode: 0
[2024-06-22 02:17:29] 2024-06-22 00:17:15,795 | INFO     | exeerrordiag: 
[2024-06-22 02:17:29] 2024-06-22 00:17:15,795 | INFO     | exitcode: 0
[2024-06-22 02:17:29] 2024-06-22 00:17:15,795 | INFO     | exitmsg: OK
[2024-06-22 02:17:29] 2024-06-22 00:17:15,795 | INFO     | cpuconsumptiontime: 62761 s
[2024-06-22 02:17:29] 2024-06-22 00:17:15,796 | INFO     | nevents: 400
[2024-06-22 02:17:29] 2024-06-22 00:17:15,796 | INFO     | neventsw: 0
[2024-06-22 02:17:29] 2024-06-22 00:17:15,796 | INFO     | pid: 55760
[2024-06-22 02:17:29] 2024-06-22 00:17:15,796 | INFO     | pgrp: 55760
[2024-06-22 02:17:29] 2024-06-22 00:17:15,796 | INFO     | corecount: 4
[2024-06-22 02:17:29] 2024-06-22 00:17:15,796 | INFO     | event service: False
[2024-06-22 02:17:29] 2024-06-22 00:17:15,796 | INFO     | sizes: {0: 2386884, 1: 2386884, 11: 2386912, 18: 2387146, 22: 2387174, 16492: 2418843, 16494: 2427825, 16497: 2427881, 16504: 2428051}
[2024-06-22 02:17:29] 2024-06-22 00:17:15,796 | INFO     | --------------------------------------------------
[2024-06-22 02:17:29] 2024-06-22 00:17:15,796 | INFO     | 
[2024-06-22 02:17:29] 2024-06-22 00:17:15,796 | INFO     | executing command: ls -lF /scratch/boinc/var/slot32/slots/0
[2024-06-22 02:17:29] 2024-06-22 00:17:15,815 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-22 02:17:29] 2024-06-22 00:17:15,816 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-22 02:17:29] 2024-06-22 00:17:15,816 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-22 02:17:29] 2024-06-22 00:17:15,816 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-22 02:17:29] 2024-06-22 00:17:15,816 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-22 02:17:29] 2024-06-22 00:17:15,816 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-22 02:17:29] 2024-06-22 00:17:15,816 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-22 02:17:29] 2024-06-22 00:17:15,816 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-22 02:17:29] 2024-06-22 00:17:15,817 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-22 02:17:29] 2024-06-22 00:17:15,817 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-22 02:17:29] 2024-06-22 00:17:15,817 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-22 02:17:29] 2024-06-22 00:17:15,817 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-22 02:17:29] 2024-06-22 00:17:15,817 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-22 02:17:29] 2024-06-22 00:17:15,817 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-22 02:17:29] 2024-06-22 00:17:15,817 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-22 02:17:29] 2024-06-22 00:17:15,817 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-22 02:17:29] 2024-06-22 00:17:15,817 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-22 02:17:29] 2024-06-22 00:17:15,817 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-22 02:17:29] 2024-06-22 00:17:15,817 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-22 02:17:29] 2024-06-22 00:17:15,818 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-22 02:17:29] 2024-06-22 00:17:15,818 | INFO     | job 6238842744 has completed (purged errors)
[2024-06-22 02:17:29] 2024-06-22 00:17:15,818 | INFO     | overall cleanup function is called
[2024-06-22 02:17:29] 2024-06-22 00:17:16,825 | INFO     | --- collectZombieJob: --- 10, [55760]
[2024-06-22 02:17:29] 2024-06-22 00:17:16,825 | INFO     | zombie collector waiting for pid 55760
[2024-06-22 02:17:29] 2024-06-22 00:17:16,825 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-22 02:17:29] 2024-06-22 00:17:17,830 | INFO     | collected zombie processes
[2024-06-22 02:17:29] 2024-06-22 00:17:17,831 | INFO     | will now attempt to kill all subprocesses of pid=55760
[2024-06-22 02:17:29] 2024-06-22 00:17:17,976 | INFO     | process IDs to be killed: [55760] (in reverse order)
[2024-06-22 02:17:29] 2024-06-22 00:17:18,078 | WARNING  | found no corresponding commands to process id(s)
[2024-06-22 02:17:29] 2024-06-22 00:17:18,079 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-22 02:17:29] 2024-06-22 00:17:18,085 | INFO     | did not find any defunct processes belonging to 55760
[2024-06-22 02:17:29] 2024-06-22 00:17:18,091 | INFO     | did not find any defunct processes belonging to 55760
[2024-06-22 02:17:29] 2024-06-22 00:17:18,091 | INFO     | ready for new job
[2024-06-22 02:17:29] 2024-06-22 00:17:18,091 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-22 02:17:29] 2024-06-22 00:17:18,093 | INFO     | *************************************
[2024-06-22 02:17:29] 2024-06-22 00:17:18,093 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-22 02:17:29] 2024-06-22 00:17:18,093 | INFO     | *************************************
[2024-06-22 02:17:29] 2024-06-22 00:17:18,093 | INFO     | 
[2024-06-22 02:17:29] 2024-06-22 00:17:18,096 | INFO     | architecture information:
[2024-06-22 02:17:29] 2024-06-22 00:17:18,096 | INFO     | executing command: cat /etc/os-release
[2024-06-22 02:17:29] 2024-06-22 00:17:18,111 | INFO     | cat /etc/os-release:
[2024-06-22 02:17:29] NAME="CentOS Linux"
[2024-06-22 02:17:29] VERSION="7 (Core)"
[2024-06-22 02:17:29] ID="centos"
[2024-06-22 02:17:29] ID_LIKE="rhel fedora"
[2024-06-22 02:17:29] VERSION_ID="7"
[2024-06-22 02:17:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-22 02:17:29] ANSI_COLOR="0;31"
[2024-06-22 02:17:29] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-22 02:17:29] HOME_URL="https://www.centos.org/"
[2024-06-22 02:17:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-22 02:17:29] 
[2024-06-22 02:17:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-22 02:17:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-22 02:17:29] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-22 02:17:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-22 02:17:29] 
[2024-06-22 02:17:29] 2024-06-22 00:17:18,112 | INFO     | *************************************
[2024-06-22 02:17:29] 2024-06-22 00:17:18,614 | INFO     | executing command: df -mP /scratch/boinc/var/slot32/slots/0
[2024-06-22 02:17:29] 2024-06-22 00:17:18,637 | INFO     | sufficient remaining disk space (659770310656 B)
[2024-06-22 02:17:29] 2024-06-22 00:17:18,637 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-22 02:17:29] 2024-06-22 00:17:18,637 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-22 02:17:29] 2024-06-22 00:17:18,637 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-06-22 02:17:29] 2024-06-22 00:17:18,638 | INFO     | found 0 job(s) in 20 queues
[2024-06-22 02:17:29] 2024-06-22 00:17:18,638 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-22 02:17:29] 2024-06-22 00:17:18,638 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-22 02:17:29] 2024-06-22 00:17:18,884 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-22 02:17:29] 2024-06-22 00:17:18,884 | INFO     | aborting loop
[2024-06-22 02:17:29] 2024-06-22 00:17:19,088 | INFO     | all payload control threads have been joined
[2024-06-22 02:17:29] 2024-06-22 00:17:19,237 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-22 02:17:29] 2024-06-22 00:17:19,550 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-22 02:17:29] 2024-06-22 00:17:19,583 | INFO     | all data control threads have been joined
[2024-06-22 02:17:29] 2024-06-22 00:17:19,642 | INFO     | [job] retrieve thread has finished
[2024-06-22 02:17:29] 2024-06-22 00:17:19,732 | INFO     | [payload] execute_payloads thread has finished
[2024-06-22 02:17:29] 2024-06-22 00:17:19,751 | INFO     | [payload] validate_post thread has finished
[2024-06-22 02:17:29] 2024-06-22 00:17:19,755 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-22 02:17:29] 2024-06-22 00:17:19,888 | INFO     | [job] job monitor thread has finished
[2024-06-22 02:17:29] 2024-06-22 00:17:20,093 | INFO     | [payload] control thread has finished
[2024-06-22 02:17:29] 2024-06-22 00:17:20,287 | INFO     | all job control threads have been joined
[2024-06-22 02:17:29] 2024-06-22 00:17:20,298 | INFO     | [job] create_data_payload thread has finished
[2024-06-22 02:17:29] 2024-06-22 00:17:20,508 | INFO     | [data] copytool_in thread has finished
[2024-06-22 02:17:29] 2024-06-22 00:17:20,584 | INFO     | [data] control thread has finished
[2024-06-22 02:17:29] 2024-06-22 00:17:20,768 | INFO     | [payload] failed_post thread has finished
[2024-06-22 02:17:29] 2024-06-22 00:17:20,804 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-22 02:17:29] 2024-06-22 00:17:20,930 | INFO     | [job] validate thread has finished
[2024-06-22 02:17:29] 2024-06-22 00:17:21,127 | INFO     | [payload] validate_pre thread has finished
[2024-06-22 02:17:29] 2024-06-22 00:17:21,292 | INFO     | [job] control thread has finished
[2024-06-22 02:17:29] 2024-06-22 00:17:21,554 | INFO     | [data] copytool_out thread has finished
[2024-06-22 02:17:29] 2024-06-22 00:17:21,809 | INFO     | [job] queue monitor thread has finished
[2024-06-22 02:17:29] 2024-06-22 00:17:23,242 | INFO     | [data] queue_monitor thread has finished
[2024-06-22 02:17:29] 2024-06-22 00:17:23,968 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47235153056832)>', '<ExcThread(monitor, started 47235337533184)>']
[2024-06-22 02:17:29] 2024-06-22 00:17:24,665 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-22 02:17:29] 2024-06-22 00:17:24,665 | INFO     | [monitor] control thread has ended
[2024-06-22 02:17:29] 2024-06-22 00:17:28,993 | INFO     | all workflow threads have been joined
[2024-06-22 02:17:29] 2024-06-22 00:17:28,993 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-22 02:17:29] 2024-06-22 00:17:28,993 | INFO     | traces error code: 0
[2024-06-22 02:17:29] 2024-06-22 00:17:28,993 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-22 02:17:29] 2024-06-22 00:17:29,082 [wrapper] ==== pilot stdout END ====
[2024-06-22 02:17:29] 2024-06-22 00:17:29,084 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-22 02:17:29] 2024-06-22 00:17:29,086 [wrapper] pilotpid: 47750
[2024-06-22 02:17:29] 2024-06-22 00:17:29,088 [wrapper] Pilot exit status: 0
[2024-06-22 02:17:29] 2024-06-22 00:17:29,096 [wrapper] pandaids: 6238842744
[2024-06-22 02:17:29] 2024-06-22 00:17:29,153 [wrapper] cleanup supervisor_pilot  686054 47751
[2024-06-22 02:17:29] 2024-06-22 00:17:29,157 [wrapper] Test setup, not cleaning
[2024-06-22 02:17:29] 2024-06-22 00:17:29,160 [wrapper] ==== wrapper stdout END ====
[2024-06-22 02:17:29] 2024-06-22 00:17:29,162 [wrapper] ==== wrapper stderr END ====
[2024-06-22 02:17:29] 2024-06-22 00:17:29,166 [wrapper] apfmon messages muted
[2024-06-22 02:17:29]  *** Error codes and diagnostics ***
[2024-06-22 02:17:29]     "exeErrorCode": 0,
[2024-06-22 02:17:29]     "exeErrorDiag": "",
[2024-06-22 02:17:29]     "pilotErrorCode": 0,
[2024-06-22 02:17:29]     "pilotErrorDiag": "",
[2024-06-22 02:17:29]  *** Listing of results directory ***
[2024-06-22 02:17:29] total 871756
[2024-06-22 02:17:29] -rw-r--r-- 1 boinc boinc    469766 Jun 20 13:33 pilot3.tar.gz
[2024-06-22 02:17:29] -rw-r--r-- 1 boinc boinc      5654 Jun 20 13:34 queuedata.json
[2024-06-22 02:17:29] -rwx------ 1 boinc boinc     32308 Jun 20 13:34 runpilot2-wrapper.sh
[2024-06-22 02:17:29] -rw-r--r-- 1 boinc boinc       100 Jun 21 21:40 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-22 02:17:29] -rwxr-xr-x 1 boinc boinc      7986 Jun 21 21:40 run_atlas
[2024-06-22 02:17:29] -rw-r--r-- 1 boinc boinc       105 Jun 21 21:40 job.xml
[2024-06-22 02:17:29] -rw-r--r-- 2 boinc boinc 614295151 Jun 21 21:40 EVNT.40024047._000020.pool.root.1
[2024-06-22 02:17:29] -rw-r--r-- 2 boinc boinc     17537 Jun 21 21:40 start_atlas.sh
[2024-06-22 02:17:29] drwxrwx--x 2 boinc boinc      4096 Jun 21 21:40 shared
[2024-06-22 02:17:29] -rw-r--r-- 2 boinc boinc    482480 Jun 21 21:40 input.tar.gz
[2024-06-22 02:17:29] -rw-r--r-- 1 boinc boinc      6661 Jun 21 21:40 init_data.xml
[2024-06-22 02:17:29] -rw-r--r-- 1 boinc boinc         0 Jun 21 21:40 boinc_lockfile
[2024-06-22 02:17:29] -rw-r--r-- 1 boinc boinc      2500 Jun 21 21:40 pandaJob.out
[2024-06-22 02:17:29] -rw------- 1 boinc boinc       424 Jun 21 21:40 setup.sh.local
[2024-06-22 02:17:29] -rw------- 1 boinc boinc   1025648 Jun 21 21:41 agis_schedconf.cvmfs.json
[2024-06-22 02:17:29] -rw------- 1 boinc boinc   1321363 Jun 21 21:41 cric_ddmendpoints.json
[2024-06-22 02:17:29] drwx------ 4 boinc boinc      4096 Jun 21 21:41 pilot3
[2024-06-22 02:17:29] -rw------- 1 boinc boinc 270742744 Jun 22 02:16 HITS.40024049._000178.pool.root.1
[2024-06-22 02:17:29] -rw------- 1 boinc boinc        95 Jun 22 02:16 pilot_heartbeat.json
[2024-06-22 02:17:29] -rw-r--r-- 1 boinc boinc       532 Jun 22 02:16 boinc_task_state.xml
[2024-06-22 02:17:29] -rw------- 1 boinc boinc      1047 Jun 22 02:17 memory_monitor_summary.json
[2024-06-22 02:17:29] -rw------- 1 boinc boinc         0 Jun 22 02:17 agis_ddmendpoints.agis.ALL.json
[2024-06-22 02:17:29] -rw------- 1 boinc boinc    352943 Jun 22 02:17 log.40024049._000178.job.log.tgz.1
[2024-06-22 02:17:29] -rw-r--r-- 1 boinc boinc      8192 Jun 22 02:17 boinc_mmap_file
[2024-06-22 02:17:29] -rw-r--r-- 1 boinc boinc        28 Jun 22 02:17 wrapper_checkpoint.txt
[2024-06-22 02:17:29] -rw------- 1 boinc boinc      7758 Jun 22 02:17 heartbeat.json
[2024-06-22 02:17:29] -rw------- 1 boinc boinc      4344 Jun 22 02:17 pilotlog.txt
[2024-06-22 02:17:29] -rw------- 1 boinc boinc   1696742 Jun 22 02:17 log.40024049._000178.job.log.1
[2024-06-22 02:17:29] -rw------- 1 boinc boinc       357 Jun 22 02:17 output.list
[2024-06-22 02:17:29] -rw-r--r-- 1 boinc boinc       620 Jun 22 02:17 runtime_log
[2024-06-22 02:17:29] -rw------- 1 boinc boinc   2068480 Jun 22 02:17 result.tar.gz
[2024-06-22 02:17:29] -rw------- 1 boinc boinc       659 Jun 22 02:17 7X6KDmrEVe5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmO8kKDmiBGq0m.diag
[2024-06-22 02:17:29] -rw-r--r-- 1 boinc boinc     11410 Jun 22 02:17 runtime_log.err
[2024-06-22 02:17:29] -rw-r--r-- 1 boinc boinc     21325 Jun 22 02:17 stderr.txt
[2024-06-22 02:17:29] HITS file was successfully produced:
[2024-06-22 02:17:30] -rw------- 1 boinc boinc 270742744 Jun 22 02:16 shared/HITS.pool.root.1
[2024-06-22 02:17:30]  *** Contents of shared directory: ***
[2024-06-22 02:17:30] total 866820
[2024-06-22 02:17:30] -rw-r--r-- 2 boinc boinc 614295151 Jun 21 21:40 ATLAS.root_0
[2024-06-22 02:17:30] -rw-r--r-- 2 boinc boinc     17537 Jun 21 21:40 start_atlas.sh
[2024-06-22 02:17:30] -rw-r--r-- 2 boinc boinc    482480 Jun 21 21:40 input.tar.gz
[2024-06-22 02:17:30] -rw------- 1 boinc boinc 270742744 Jun 22 02:16 HITS.pool.root.1
[2024-06-22 02:17:30] -rw------- 1 boinc boinc   2068480 Jun 22 02:17 result.tar.gz
02:17:31 (41439): run_atlas exited; CPU time 62454.054512
02:17:31 (41439): called boinc_finish(0)

</stderr_txt>
]]>

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