Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:11:02 (2603385): wrapper (7.7.26015): starting
16:11:02 (2603385): wrapper: running run_atlas (--nthreads 4)
[2024-06-21 16:11:02] Arguments: --nthreads 4
[2024-06-21 16:11:02] Threads: 4
[2024-06-21 16:11:02] Checking for CVMFS
[2024-06-21 16:11:02] No cvmfs_config command found, will try listing directly
[2024-06-21 16:11:02] CVMFS is ok
[2024-06-21 16:11:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-21 16:11:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-21 16:11:02] Further information can be found at the LHC@home message board.
[2024-06-21 16:11:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-21 16:11:02] Checking for apptainer binary...
[2024-06-21 16:11:02] which: no apptainer in ((null))
[2024-06-21 16:11:02] apptainer is not installed, using version from CVMFS
[2024-06-21 16:11:02] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-21 16:11:03] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut29.grid.cesnet.cz
[2024-06-21 16:11:03] apptainer works
[2024-06-21 16:11:03] Set ATHENA_PROC_NUMBER=4
[2024-06-21 16:11:03] Set ATHENA_CORE_NUMBER=4
[2024-06-21 16:11:03] Starting ATLAS job with PandaID=6238811760
[2024-06-21 16:11:03] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot36/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-22 07:08:28]  *** The last 200 lines of the pilot log: ***
[2024-06-22 07:08:28] 2024-06-22 05:08:13,042 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-06-22 07:08:28] 2024-06-22 05:08:13,042 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-06-22 07:08:28] 2024-06-22 05:08:13,059 | INFO     | fitting pss+swap vs Time
[2024-06-22 07:08:28] 2024-06-22 05:08:13,060 | INFO     | model: linear, x: [1718979100.0, 1718979161.0, 1718979222.0, 1718979283.0, 1718979344.0, 1718979405.0, 1718979466.0, 1718979527.0, 1718979588.0, 1718979649.0, 1718
[2024-06-22 07:08:28] 2024-06-22 05:08:13,061 | INFO     | sum of square deviations: 212756884000.5
[2024-06-22 07:08:28] 2024-06-22 05:08:13,082 | INFO     | sum of deviations: 458737760058.49994
[2024-06-22 07:08:28] 2024-06-22 05:08:13,083 | INFO     | mean x: 1719005970.5
[2024-06-22 07:08:28] 2024-06-22 05:08:13,083 | INFO     | mean y: 2354295.157596372
[2024-06-22 07:08:28] 2024-06-22 05:08:13,083 | INFO     | -- intersect: -3704096624.8159475
[2024-06-22 07:08:28] 2024-06-22 05:08:13,083 | INFO     | intersect: -3704096624.8159475
[2024-06-22 07:08:28] 2024-06-22 05:08:13,085 | INFO     | chi2: 4.797402684600842
[2024-06-22 07:08:28] 2024-06-22 05:08:13,086 | INFO     | model: linear, x: [1718979100.0, 1718979161.0, 1718979222.0, 1718979283.0, 1718979344.0, 1718979405.0, 1718979466.0, 1718979527.0, 1718979588.0, 1718979649.0, 1718
[2024-06-22 07:08:28] 2024-06-22 05:08:13,086 | INFO     | sum of square deviations: 209159039798.0
[2024-06-22 07:08:28] 2024-06-22 05:08:13,107 | INFO     | sum of deviations: 510816053503.99994
[2024-06-22 07:08:28] 2024-06-22 05:08:13,107 | INFO     | mean x: 1719005818.0
[2024-06-22 07:08:28] 2024-06-22 05:08:13,107 | INFO     | mean y: 2356491.8141391105
[2024-06-22 07:08:28] 2024-06-22 05:08:13,108 | INFO     | -- intersect: -4195864004.652166
[2024-06-22 07:08:28] 2024-06-22 05:08:13,108 | INFO     | intersect: -4195864004.652166
[2024-06-22 07:08:28] 2024-06-22 05:08:13,109 | INFO     | chi2: 4.042334214882258
[2024-06-22 07:08:28] 2024-06-22 05:08:13,109 | INFO     | current chi2=4.042334214882258 (change=15.739109667451393 %)
[2024-06-22 07:08:28] 2024-06-22 05:08:13,109 | INFO     | right removable region: 876
[2024-06-22 07:08:28] 2024-06-22 05:08:13,110 | INFO     | model: linear, x: [1718979405.0, 1718979466.0, 1718979527.0, 1718979588.0, 1718979649.0, 1718979710.0, 1718979771.0, 1718979832.0, 1718979893.0, 1718979954.0, 1718
[2024-06-22 07:08:28] 2024-06-22 05:08:13,110 | INFO     | sum of square deviations: 209159039798.0
[2024-06-22 07:08:28] 2024-06-22 05:08:13,120 | INFO     | sum of deviations: 254998139143.0001
[2024-06-22 07:08:28] 2024-06-22 05:08:13,121 | INFO     | mean x: 1719006123.0
[2024-06-22 07:08:28] 2024-06-22 05:08:13,121 | INFO     | mean y: 2362925.0980615737
[2024-06-22 07:08:28] 2024-06-22 05:08:13,121 | INFO     | -- intersect: -2093378970.4650612
[2024-06-22 07:08:28] 2024-06-22 05:08:13,121 | INFO     | intersect: -2093378970.4650612
[2024-06-22 07:08:28] 2024-06-22 05:08:13,121 | INFO     | chi2: 2.5289992200704083
[2024-06-22 07:08:28] 2024-06-22 05:08:13,121 | INFO     | current chi2=2.5289992200704083 (change=47.283991227414994 %)
[2024-06-22 07:08:28] 2024-06-22 05:08:13,122 | INFO     | model: linear, x: [1718979710.0, 1718979771.0, 1718979832.0, 1718979893.0, 1718979954.0, 1718980015.0, 1718980076.0, 1718980137.0, 1718980198.0, 1718980259.0, 1718
[2024-06-22 07:08:28] 2024-06-22 05:08:13,122 | INFO     | sum of square deviations: 205601987058.0
[2024-06-22 07:08:28] 2024-06-22 05:08:13,132 | INFO     | sum of deviations: 75030745236.99998
[2024-06-22 07:08:28] 2024-06-22 05:08:13,133 | INFO     | mean x: 1719006275.5
[2024-06-22 07:08:28] 2024-06-22 05:08:13,133 | INFO     | mean y: 2370640.6651376146
[2024-06-22 07:08:28] 2024-06-22 05:08:13,133 | INFO     | -- intersect: -624949764.9565265
[2024-06-22 07:08:28] 2024-06-22 05:08:13,133 | INFO     | intersect: -624949764.9565265
[2024-06-22 07:08:28] 2024-06-22 05:08:13,133 | INFO     | chi2: 0.9117422676686631
[2024-06-22 07:08:28] 2024-06-22 05:08:13,133 | INFO     | current chi2=0.9117422676686631 (change=63.948495498417756 %)
[2024-06-22 07:08:28] 2024-06-22 05:08:13,134 | INFO     | model: linear, x: [1718980015.0, 1718980076.0, 1718980137.0, 1718980198.0, 1718980259.0, 1718980320.0, 1718980381.0, 1718980442.0, 1718980503.0, 1718980564.0, 1718
[2024-06-22 07:08:28] 2024-06-22 05:08:13,134 | INFO     | sum of square deviations: 202085493218.0
[2024-06-22 07:08:28] 2024-06-22 05:08:13,144 | INFO     | sum of deviations: 31068501333.999977
[2024-06-22 07:08:28] 2024-06-22 05:08:13,144 | INFO     | mean x: 1719006428.0
[2024-06-22 07:08:28] 2024-06-22 05:08:13,144 | INFO     | mean y: 2372544.2076124568
[2024-06-22 07:08:28] 2024-06-22 05:08:13,145 | INFO     | -- intersect: -261906462.9146836
[2024-06-22 07:08:28] 2024-06-22 05:08:13,145 | INFO     | intersect: -261906462.9146836
[2024-06-22 07:08:28] 2024-06-22 05:08:13,145 | INFO     | chi2: 0.7903751339589639
[2024-06-22 07:08:28] 2024-06-22 05:08:13,145 | INFO     | current chi2=0.7903751339589639 (change=13.31156161269528 %)
[2024-06-22 07:08:28] 2024-06-22 05:08:13,145 | INFO     | left removable region: 30
[2024-06-22 07:08:28] 2024-06-22 05:08:13,146 | INFO     | model: linear, x: [1718980930.0, 1718980991.0, 1718981052.0, 1718981113.0, 1718981174.0, 1718981235.0, 1718981296.0, 1718981357.0, 1718981418.0, 1718981479.0, 1718
[2024-06-22 07:08:28] 2024-06-22 05:08:13,146 | INFO     | sum of square deviations: 187753873807.5
[2024-06-22 07:08:28] 2024-06-22 05:08:13,156 | INFO     | sum of deviations: 55311720201.49999
[2024-06-22 07:08:28] 2024-06-22 05:08:13,156 | INFO     | mean x: 1719006702.5
[2024-06-22 07:08:28] 2024-06-22 05:08:13,156 | INFO     | mean y: 2376171.6276595746
[2024-06-22 07:08:28] 2024-06-22 05:08:13,156 | INFO     | -- intersect: -504037974.8557726
[2024-06-22 07:08:28] 2024-06-22 05:08:13,156 | INFO     | intersect: -504037974.8557726
[2024-06-22 07:08:28] 2024-06-22 05:08:13,157 | INFO     | chi2: 0.0029484795426948053
[2024-06-22 07:08:28] 2024-06-22 05:08:13,157 | INFO     | -- intersect: -504037974.8557726
[2024-06-22 07:08:28] 2024-06-22 05:08:13,157 | INFO     | current memory leak: 0.29 B/s (using 846 data points, chi2=0.00)
[2024-06-22 07:08:28] 2024-06-22 05:08:13,157 | INFO     | ..............................
[2024-06-22 07:08:28] 2024-06-22 05:08:13,158 | INFO     | . Timing measurements:
[2024-06-22 07:08:28] 2024-06-22 05:08:13,158 | INFO     | . get job = 0 s
[2024-06-22 07:08:28] 2024-06-22 05:08:13,158 | INFO     | . initial setup = 1 s
[2024-06-22 07:08:28] 2024-06-22 05:08:13,158 | INFO     | . payload setup = 6 s
[2024-06-22 07:08:28] 2024-06-22 05:08:13,158 | INFO     | . stage-in = 0 s
[2024-06-22 07:08:28] 2024-06-22 05:08:13,158 | INFO     | . payload execution = 53779 s
[2024-06-22 07:08:28] 2024-06-22 05:08:13,158 | INFO     | . stage-out = 1 s
[2024-06-22 07:08:28] 2024-06-22 05:08:13,158 | INFO     | . log creation = 0 s
[2024-06-22 07:08:28] 2024-06-22 05:08:13,158 | INFO     | ..............................
[2024-06-22 07:08:28] 2024-06-22 05:08:13,438 | INFO     | 
[2024-06-22 07:08:28] 2024-06-22 05:08:13,438 | INFO     | job summary report
[2024-06-22 07:08:28] 2024-06-22 05:08:13,438 | INFO     | --------------------------------------------------
[2024-06-22 07:08:28] 2024-06-22 05:08:13,439 | INFO     | PanDA job id: 6238811760
[2024-06-22 07:08:28] 2024-06-22 05:08:13,439 | INFO     | task id: 38921013
[2024-06-22 07:08:28] 2024-06-22 05:08:13,439 | INFO     | errors: (none)
[2024-06-22 07:08:28] 2024-06-22 05:08:13,439 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-22 07:08:28] 2024-06-22 05:08:13,439 | INFO     | pilot state: finished 
[2024-06-22 07:08:28] 2024-06-22 05:08:13,439 | INFO     | transexitcode: 0
[2024-06-22 07:08:28] 2024-06-22 05:08:13,439 | INFO     | exeerrorcode: 0
[2024-06-22 07:08:28] 2024-06-22 05:08:13,439 | INFO     | exeerrordiag: 
[2024-06-22 07:08:28] 2024-06-22 05:08:13,440 | INFO     | exitcode: 0
[2024-06-22 07:08:28] 2024-06-22 05:08:13,440 | INFO     | exitmsg: OK
[2024-06-22 07:08:28] 2024-06-22 05:08:13,440 | INFO     | cpuconsumptiontime: 206893 s
[2024-06-22 07:08:28] 2024-06-22 05:08:13,440 | INFO     | nevents: 400
[2024-06-22 07:08:28] 2024-06-22 05:08:13,440 | INFO     | neventsw: 0
[2024-06-22 07:08:28] 2024-06-22 05:08:13,440 | INFO     | pid: 2614431
[2024-06-22 07:08:28] 2024-06-22 05:08:13,440 | INFO     | pgrp: 2614431
[2024-06-22 07:08:28] 2024-06-22 05:08:13,440 | INFO     | corecount: 4
[2024-06-22 07:08:28] 2024-06-22 05:08:13,441 | INFO     | event service: False
[2024-06-22 07:08:28] 2024-06-22 05:08:13,441 | INFO     | sizes: {0: 2387022, 1: 2387022, 4: 2387256, 11: 2387284, 53790: 2436196, 53792: 2445178, 53793: 2445362, 53805: 2445532}
[2024-06-22 07:08:28] 2024-06-22 05:08:13,441 | INFO     | --------------------------------------------------
[2024-06-22 07:08:28] 2024-06-22 05:08:13,441 | INFO     | 
[2024-06-22 07:08:28] 2024-06-22 05:08:13,441 | INFO     | executing command: ls -lF /scratch/boinc/var/slot36/slots/1
[2024-06-22 07:08:28] 2024-06-22 05:08:13,462 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-22 07:08:28] 2024-06-22 05:08:13,463 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-22 07:08:28] 2024-06-22 05:08:13,463 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-22 07:08:28] 2024-06-22 05:08:13,463 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-22 07:08:28] 2024-06-22 05:08:13,463 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-22 07:08:28] 2024-06-22 05:08:13,463 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-22 07:08:28] 2024-06-22 05:08:13,463 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-22 07:08:28] 2024-06-22 05:08:13,463 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-22 07:08:28] 2024-06-22 05:08:13,464 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-22 07:08:28] 2024-06-22 05:08:13,464 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-22 07:08:28] 2024-06-22 05:08:13,464 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-22 07:08:28] 2024-06-22 05:08:13,464 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-22 07:08:28] 2024-06-22 05:08:13,464 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-22 07:08:28] 2024-06-22 05:08:13,464 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-22 07:08:28] 2024-06-22 05:08:13,464 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-22 07:08:28] 2024-06-22 05:08:13,465 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-22 07:08:28] 2024-06-22 05:08:13,465 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-22 07:08:28] 2024-06-22 05:08:13,465 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-22 07:08:28] 2024-06-22 05:08:13,465 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-22 07:08:28] 2024-06-22 05:08:13,465 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-22 07:08:28] 2024-06-22 05:08:13,465 | INFO     | job 6238811760 has completed (purged errors)
[2024-06-22 07:08:28] 2024-06-22 05:08:13,466 | INFO     | overall cleanup function is called
[2024-06-22 07:08:28] 2024-06-22 05:08:14,474 | INFO     | --- collectZombieJob: --- 10, [2614431]
[2024-06-22 07:08:28] 2024-06-22 05:08:14,474 | INFO     | zombie collector waiting for pid 2614431
[2024-06-22 07:08:28] 2024-06-22 05:08:14,474 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-22 07:08:28] 2024-06-22 05:08:15,479 | INFO     | collected zombie processes
[2024-06-22 07:08:28] 2024-06-22 05:08:15,479 | INFO     | will now attempt to kill all subprocesses of pid=2614431
[2024-06-22 07:08:28] 2024-06-22 05:08:15,616 | INFO     | process IDs to be killed: [2614431] (in reverse order)
[2024-06-22 07:08:28] 2024-06-22 05:08:15,681 | WARNING  | found no corresponding commands to process id(s)
[2024-06-22 07:08:28] 2024-06-22 05:08:15,681 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-22 07:08:28] 2024-06-22 05:08:15,685 | INFO     | did not find any defunct processes belonging to 2614431
[2024-06-22 07:08:28] 2024-06-22 05:08:15,688 | INFO     | did not find any defunct processes belonging to 2614431
[2024-06-22 07:08:28] 2024-06-22 05:08:15,688 | INFO     | ready for new job
[2024-06-22 07:08:28] 2024-06-22 05:08:15,689 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-22 07:08:28] 2024-06-22 05:08:15,692 | INFO     | *************************************
[2024-06-22 07:08:28] 2024-06-22 05:08:15,692 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-22 07:08:28] 2024-06-22 05:08:15,692 | INFO     | *************************************
[2024-06-22 07:08:28] 2024-06-22 05:08:15,692 | INFO     | 
[2024-06-22 07:08:28] 2024-06-22 05:08:15,693 | INFO     | architecture information:
[2024-06-22 07:08:28] 2024-06-22 05:08:15,693 | INFO     | executing command: cat /etc/os-release
[2024-06-22 07:08:28] 2024-06-22 05:08:15,721 | INFO     | cat /etc/os-release:
[2024-06-22 07:08:28] NAME="CentOS Linux"
[2024-06-22 07:08:28] VERSION="7 (Core)"
[2024-06-22 07:08:28] ID="centos"
[2024-06-22 07:08:28] ID_LIKE="rhel fedora"
[2024-06-22 07:08:28] VERSION_ID="7"
[2024-06-22 07:08:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-22 07:08:28] ANSI_COLOR="0;31"
[2024-06-22 07:08:28] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-22 07:08:28] HOME_URL="https://www.centos.org/"
[2024-06-22 07:08:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-22 07:08:28] 
[2024-06-22 07:08:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-22 07:08:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-22 07:08:28] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-22 07:08:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-22 07:08:28] 
[2024-06-22 07:08:28] 2024-06-22 05:08:15,722 | INFO     | *************************************
[2024-06-22 07:08:28] 2024-06-22 05:08:16,224 | INFO     | executing command: df -mP /scratch/boinc/var/slot36/slots/1
[2024-06-22 07:08:28] 2024-06-22 05:08:16,245 | INFO     | sufficient remaining disk space (1667361669120 B)
[2024-06-22 07:08:28] 2024-06-22 05:08:16,245 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-22 07:08:28] 2024-06-22 05:08:16,245 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-22 07:08:28] 2024-06-22 05:08:16,246 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-06-22 07:08:28] 2024-06-22 05:08:16,246 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-22 07:08:28] 2024-06-22 05:08:16,246 | INFO     | found 0 job(s) in 20 queues
[2024-06-22 07:08:28] 2024-06-22 05:08:16,246 | INFO     | aborting loop
[2024-06-22 07:08:28] 2024-06-22 05:08:16,247 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-22 07:08:28] 2024-06-22 05:08:16,247 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-22 07:08:28] 2024-06-22 05:08:16,304 | INFO     | all job control threads have been joined
[2024-06-22 07:08:28] 2024-06-22 05:08:16,425 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-22 07:08:28] 2024-06-22 05:08:16,821 | INFO     | all payload control threads have been joined
[2024-06-22 07:08:28] 2024-06-22 05:08:17,030 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-22 07:08:28] 2024-06-22 05:08:17,250 | INFO     | [job] retrieve thread has finished
[2024-06-22 07:08:28] 2024-06-22 05:08:17,251 | INFO     | [job] job monitor thread has finished
[2024-06-22 07:08:28] 2024-06-22 05:08:17,309 | INFO     | [job] control thread has finished
[2024-06-22 07:08:28] 2024-06-22 05:08:17,323 | INFO     | all data control threads have been joined
[2024-06-22 07:08:28] 2024-06-22 05:08:17,387 | INFO     | [payload] execute_payloads thread has finished
[2024-06-22 07:08:28] 2024-06-22 05:08:17,698 | INFO     | [payload] validate_pre thread has finished
[2024-06-22 07:08:28] 2024-06-22 05:08:17,826 | INFO     | [payload] control thread has finished
[2024-06-22 07:08:28] 2024-06-22 05:08:17,986 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-22 07:08:28] 2024-06-22 05:08:18,131 | INFO     | [job] create_data_payload thread has finished
[2024-06-22 07:08:28] 2024-06-22 05:08:18,212 | INFO     | [data] copytool_in thread has finished
[2024-06-22 07:08:28] 2024-06-22 05:08:18,220 | INFO     | [job] validate thread has finished
[2024-06-22 07:08:28] 2024-06-22 05:08:18,262 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-22 07:08:28] 2024-06-22 05:08:18,328 | INFO     | [data] control thread has finished
[2024-06-22 07:08:28] 2024-06-22 05:08:18,430 | INFO     | [data] copytool_out thread has finished
[2024-06-22 07:08:28] 2024-06-22 05:08:18,564 | INFO     | [payload] failed_post thread has finished
[2024-06-22 07:08:28] 2024-06-22 05:08:18,703 | INFO     | [payload] validate_post thread has finished
[2024-06-22 07:08:28] 2024-06-22 05:08:19,267 | INFO     | [job] queue monitor thread has finished
[2024-06-22 07:08:28] 2024-06-22 05:08:21,035 | INFO     | [data] queue_monitor thread has finished
[2024-06-22 07:08:28] 2024-06-22 05:08:21,863 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 48006709244992)>', '<ExcThread(monitor, started 48006893721344)>']
[2024-06-22 07:08:28] 2024-06-22 05:08:22,277 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-22 07:08:28] 2024-06-22 05:08:22,277 | INFO     | [monitor] control thread has ended
[2024-06-22 07:08:28] 2024-06-22 05:08:26,888 | INFO     | all workflow threads have been joined
[2024-06-22 07:08:28] 2024-06-22 05:08:26,888 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-22 07:08:28] 2024-06-22 05:08:26,889 | INFO     | traces error code: 0
[2024-06-22 07:08:28] 2024-06-22 05:08:26,889 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-22 07:08:28] 2024-06-22 05:08:27,025 [wrapper] ==== pilot stdout END ====
[2024-06-22 07:08:28] 2024-06-22 05:08:27,027 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-22 07:08:28] 2024-06-22 05:08:27,029 [wrapper] pilotpid: 2607609
[2024-06-22 07:08:28] 2024-06-22 05:08:27,032 [wrapper] Pilot exit status: 0
[2024-06-22 07:08:28] 2024-06-22 05:08:27,074 [wrapper] pandaids: 6238811760
[2024-06-22 07:08:28] 2024-06-22 05:08:27,157 [wrapper] cleanup supervisor_pilot 4001065 2607610
[2024-06-22 07:08:28] 2024-06-22 05:08:27,163 [wrapper] Test setup, not cleaning
[2024-06-22 07:08:28] 2024-06-22 05:08:27,166 [wrapper] ==== wrapper stdout END ====
[2024-06-22 07:08:28] 2024-06-22 05:08:27,171 [wrapper] ==== wrapper stderr END ====
[2024-06-22 07:08:28] 2024-06-22 05:08:27,180 [wrapper] apfmon messages muted
[2024-06-22 07:08:28]  *** Error codes and diagnostics ***
[2024-06-22 07:08:28]     "exeErrorCode": 0,
[2024-06-22 07:08:28]     "exeErrorDiag": "",
[2024-06-22 07:08:28]     "pilotErrorCode": 0,
[2024-06-22 07:08:28]     "pilotErrorDiag": "",
[2024-06-22 07:08:28]  *** Listing of results directory ***
[2024-06-22 07:08:28] total 892948
[2024-06-22 07:08:28] -rw-r--r-- 1 boinc boinc    469766 Jun 20 10:06 pilot3.tar.gz
[2024-06-22 07:08:28] -rwx------ 1 boinc boinc     32308 Jun 20 10:20 runpilot2-wrapper.sh
[2024-06-22 07:08:28] -rw-r--r-- 1 boinc boinc      5654 Jun 20 10:20 queuedata.json
[2024-06-22 07:08:28] -rw-r--r-- 1 boinc boinc       100 Jun 21 16:10 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-22 07:08:28] -rwxr-xr-x 1 boinc boinc      7986 Jun 21 16:10 run_atlas
[2024-06-22 07:08:28] -rw-r--r-- 1 boinc boinc       105 Jun 21 16:10 job.xml
[2024-06-22 07:08:28] -rw-r--r-- 1 boinc boinc      6454 Jun 21 16:11 init_data.xml
[2024-06-22 07:08:28] -rw-r--r-- 2 boinc boinc 543199485 Jun 21 16:11 EVNT.38776210._000653.pool.root.1
[2024-06-22 07:08:28] -rw-r--r-- 2 boinc boinc     17537 Jun 21 16:11 start_atlas.sh
[2024-06-22 07:08:28] drwxrwx--x 2 boinc boinc      4096 Jun 21 16:11 shared
[2024-06-22 07:08:28] -rw-r--r-- 2 boinc boinc    482532 Jun 21 16:11 input.tar.gz
[2024-06-22 07:08:28] -rw-r--r-- 1 boinc boinc         0 Jun 21 16:11 boinc_lockfile
[2024-06-22 07:08:28] -rw-r--r-- 1 boinc boinc      2645 Jun 21 16:11 pandaJob.out
[2024-06-22 07:08:28] -rw------- 1 boinc boinc       424 Jun 21 16:11 setup.sh.local
[2024-06-22 07:08:28] -rw------- 1 boinc boinc   1023013 Jun 21 16:11 agis_schedconf.cvmfs.json
[2024-06-22 07:08:28] -rw------- 1 boinc boinc   1321251 Jun 21 16:11 cric_ddmendpoints.json
[2024-06-22 07:08:28] drwx------ 4 boinc boinc      4096 Jun 21 16:11 pilot3
[2024-06-22 07:08:28] -rw------- 1 boinc boinc 350863789 Jun 22 07:07 HITS.38921013._050136.pool.root.1
[2024-06-22 07:08:28] -rw-r--r-- 1 boinc boinc       533 Jun 22 07:07 boinc_task_state.xml
[2024-06-22 07:08:28] -rw------- 1 boinc boinc        95 Jun 22 07:07 pilot_heartbeat.json
[2024-06-22 07:08:28] -rw------- 1 boinc boinc      1044 Jun 22 07:07 memory_monitor_summary.json
[2024-06-22 07:08:28] -rw------- 1 boinc boinc         0 Jun 22 07:08 agis_ddmendpoints.agis.ALL.json
[2024-06-22 07:08:28] -rw------- 1 boinc boinc    806843 Jun 22 07:08 log.38921013._050136.job.log.tgz.1
[2024-06-22 07:08:28] -rw------- 1 boinc boinc      7764 Jun 22 07:08 heartbeat.json
[2024-06-22 07:08:28] -rw-r--r-- 1 boinc boinc        29 Jun 22 07:08 wrapper_checkpoint.txt
[2024-06-22 07:08:28] -rw-r--r-- 1 boinc boinc      8192 Jun 22 07:08 boinc_mmap_file
[2024-06-22 07:08:28] -rw------- 1 boinc boinc      4345 Jun 22 07:08 pilotlog.txt
[2024-06-22 07:08:28] -rw------- 1 boinc boinc   7582874 Jun 22 07:08 log.38921013._050136.job.log.1
[2024-06-22 07:08:28] -rw------- 1 boinc boinc       357 Jun 22 07:08 output.list
[2024-06-22 07:08:28] -rw-r--r-- 1 boinc boinc       620 Jun 22 07:08 runtime_log
[2024-06-22 07:08:28] -rw------- 1 boinc boinc   8407040 Jun 22 07:08 result.tar.gz
[2024-06-22 07:08:28] -rw------- 1 boinc boinc       662 Jun 22 07:08 vQFNDmrCSe5n9Rq4apOajLDm4fhM0noT9bVo2ijZDmPBXKDmLDY3Sn.diag
[2024-06-22 07:08:28] -rw-r--r-- 1 boinc boinc     11410 Jun 22 07:08 runtime_log.err
[2024-06-22 07:08:28] -rw-r--r-- 1 boinc boinc     21363 Jun 22 07:08 stderr.txt
[2024-06-22 07:08:28] HITS file was successfully produced:
[2024-06-22 07:08:28] -rw------- 1 boinc boinc 350863789 Jun 22 07:07 shared/HITS.pool.root.1
[2024-06-22 07:08:28]  *** Contents of shared directory: ***
[2024-06-22 07:08:28] total 881828
[2024-06-22 07:08:28] -rw-r--r-- 2 boinc boinc 543199485 Jun 21 16:11 ATLAS.root_0
[2024-06-22 07:08:28] -rw-r--r-- 2 boinc boinc     17537 Jun 21 16:11 start_atlas.sh
[2024-06-22 07:08:28] -rw-r--r-- 2 boinc boinc    482532 Jun 21 16:11 input.tar.gz
[2024-06-22 07:08:28] -rw------- 1 boinc boinc 350863789 Jun 22 07:07 HITS.pool.root.1
[2024-06-22 07:08:28] -rw------- 1 boinc boinc   8407040 Jun 22 07:08 result.tar.gz
07:08:30 (2603385): run_atlas exited; CPU time 206437.303601
07:08:30 (2603385): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN