Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:41:23 (1158308): wrapper (7.7.26015): starting
01:41:23 (1158308): wrapper: running run_atlas (--nthreads 4)
[2024-06-23 01:41:23] Arguments: --nthreads 4
[2024-06-23 01:41:23] Threads: 4
[2024-06-23 01:41:23] Checking for CVMFS
[2024-06-23 01:41:23] No cvmfs_config command found, will try listing directly
[2024-06-23 01:41:23] CVMFS is ok
[2024-06-23 01:41:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-23 01:41:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-23 01:41:23] Further information can be found at the LHC@home message board.
[2024-06-23 01:41:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-23 01:41:23] Checking for apptainer binary...
[2024-06-23 01:41:23] which: no apptainer in ((null))
[2024-06-23 01:41:23] apptainer is not installed, using version from CVMFS
[2024-06-23 01:41:23] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-23 01:41:25] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut31.grid.cesnet.cz
[2024-06-23 01:41:25] apptainer works
[2024-06-23 01:41:25] Set ATHENA_PROC_NUMBER=4
[2024-06-23 01:41:25] Set ATHENA_CORE_NUMBER=4
[2024-06-23 01:41:25] Starting ATLAS job with PandaID=6238801138
[2024-06-23 01:41:25] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-23 15:20:22]  *** The last 200 lines of the pilot log: ***
[2024-06-23 15:20:22] 2024-06-23 13:20:04,461 | INFO     | intersect: -5228242614.259999
[2024-06-23 15:20:22] 2024-06-23 13:20:04,462 | INFO     | chi2: 4.738442623926438
[2024-06-23 15:20:22] 2024-06-23 13:20:04,463 | INFO     | model: linear, x: [1719099792.0, 1719099853.0, 1719099914.0, 1719099975.0, 1719100036.0, 1719100097.0, 1719100158.0, 1719100219.0, 1719100280.0, 1719100341.0, 1719
[2024-06-23 15:20:22] 2024-06-23 13:20:04,464 | INFO     | sum of square deviations: 158167802800.0
[2024-06-23 15:20:22] 2024-06-23 13:20:04,481 | INFO     | sum of deviations: 537374640374.0
[2024-06-23 15:20:22] 2024-06-23 13:20:04,481 | INFO     | mean x: 1719124131.0
[2024-06-23 15:20:22] 2024-06-23 13:20:04,481 | INFO     | mean y: 2362578.4142678347
[2024-06-23 15:20:22] 2024-06-23 13:20:04,481 | INFO     | -- intersect: -5838356552.157042
[2024-06-23 15:20:22] 2024-06-23 13:20:04,482 | INFO     | intersect: -5838356552.157042
[2024-06-23 15:20:22] 2024-06-23 13:20:04,483 | INFO     | chi2: 3.9894254957123354
[2024-06-23 15:20:22] 2024-06-23 13:20:04,483 | INFO     | current chi2=3.9894254957123354 (change=15.807242751700572 %)
[2024-06-23 15:20:22] 2024-06-23 13:20:04,483 | INFO     | right removable region: 798
[2024-06-23 15:20:22] 2024-06-23 13:20:04,484 | INFO     | model: linear, x: [1719100097.0, 1719100158.0, 1719100219.0, 1719100280.0, 1719100341.0, 1719100402.0, 1719100463.0, 1719100524.0, 1719100585.0, 1719100646.0, 1719
[2024-06-23 15:20:22] 2024-06-23 13:20:04,484 | INFO     | sum of square deviations: 158167802800.0
[2024-06-23 15:20:22] 2024-06-23 13:20:04,501 | INFO     | sum of deviations: 302557329664.0
[2024-06-23 15:20:22] 2024-06-23 13:20:04,502 | INFO     | mean x: 1719124436.0
[2024-06-23 15:20:22] 2024-06-23 13:20:04,502 | INFO     | mean y: 2369766.8585732165
[2024-06-23 15:20:22] 2024-06-23 13:20:04,502 | INFO     | -- intersect: -3286123147.0500093
[2024-06-23 15:20:22] 2024-06-23 13:20:04,502 | INFO     | intersect: -3286123147.0500093
[2024-06-23 15:20:22] 2024-06-23 13:20:04,503 | INFO     | chi2: 2.4559854632737865
[2024-06-23 15:20:22] 2024-06-23 13:20:04,504 | INFO     | current chi2=2.4559854632737865 (change=48.168931056114126 %)
[2024-06-23 15:20:22] 2024-06-23 13:20:04,504 | INFO     | model: linear, x: [1719100402.0, 1719100463.0, 1719100524.0, 1719100585.0, 1719100646.0, 1719100707.0, 1719100768.0, 1719100829.0, 1719100890.0, 1719100951.0, 1719
[2024-06-23 15:20:22] 2024-06-23 13:20:04,505 | INFO     | sum of square deviations: 155216984682.5
[2024-06-23 15:20:22] 2024-06-23 13:20:04,522 | INFO     | sum of deviations: 168436083043.0
[2024-06-23 15:20:22] 2024-06-23 13:20:04,522 | INFO     | mean x: 1719124588.5
[2024-06-23 15:20:22] 2024-06-23 13:20:04,522 | INFO     | mean y: 2376698.1662468514
[2024-06-23 15:20:22] 2024-06-23 13:20:04,522 | INFO     | -- intersect: -1863157621.6902838
[2024-06-23 15:20:22] 2024-06-23 13:20:04,522 | INFO     | intersect: -1863157621.6902838
[2024-06-23 15:20:22] 2024-06-23 13:20:04,524 | INFO     | chi2: 1.395835413949877
[2024-06-23 15:20:22] 2024-06-23 13:20:04,524 | INFO     | current chi2=1.395835413949877 (change=43.1659741141443 %)
[2024-06-23 15:20:22] 2024-06-23 13:20:04,525 | INFO     | model: linear, x: [1719100707.0, 1719100768.0, 1719100829.0, 1719100890.0, 1719100951.0, 1719101012.0, 1719101073.0, 1719101134.0, 1719101195.0, 1719101256.0, 1719
[2024-06-23 15:20:22] 2024-06-23 13:20:04,525 | INFO     | sum of square deviations: 152303097490.0
[2024-06-23 15:20:22] 2024-06-23 13:20:04,542 | INFO     | sum of deviations: 82293286897.0
[2024-06-23 15:20:22] 2024-06-23 13:20:04,542 | INFO     | mean x: 1719124741.0
[2024-06-23 15:20:22] 2024-06-23 13:20:04,542 | INFO     | mean y: 2381196.8504435993
[2024-06-23 15:20:22] 2024-06-23 13:20:04,542 | INFO     | -- intersect: -926506185.3128293
[2024-06-23 15:20:22] 2024-06-23 13:20:04,542 | INFO     | intersect: -926506185.3128293
[2024-06-23 15:20:22] 2024-06-23 13:20:04,544 | INFO     | chi2: 0.7896831101775217
[2024-06-23 15:20:22] 2024-06-23 13:20:04,544 | INFO     | current chi2=0.7896831101775217 (change=43.42577195810577 %)
[2024-06-23 15:20:22] 2024-06-23 13:20:04,545 | INFO     | model: linear, x: [1719101012.0, 1719101073.0, 1719101134.0, 1719101195.0, 1719101256.0, 1719101317.0, 1719101378.0, 1719101439.0, 1719101500.0, 1719101561.0, 1719
[2024-06-23 15:20:22] 2024-06-23 13:20:04,545 | INFO     | sum of square deviations: 149425908660.0
[2024-06-23 15:20:22] 2024-06-23 13:20:04,562 | INFO     | sum of deviations: 74031968386.0
[2024-06-23 15:20:22] 2024-06-23 13:20:04,562 | INFO     | mean x: 1719124893.5
[2024-06-23 15:20:22] 2024-06-23 13:20:04,562 | INFO     | mean y: 2381634.1045918367
[2024-06-23 15:20:22] 2024-06-23 13:20:04,562 | INFO     | -- intersect: -849346161.3526542
[2024-06-23 15:20:22] 2024-06-23 13:20:04,562 | INFO     | intersect: -849346161.3526542
[2024-06-23 15:20:22] 2024-06-23 13:20:04,563 | INFO     | chi2: 0.7859707867183129
[2024-06-23 15:20:22] 2024-06-23 13:20:04,564 | INFO     | current chi2=0.7859707867183129 (change=0.47010293260220104 %)
[2024-06-23 15:20:22] 2024-06-23 13:20:04,564 | INFO     | left removable region: 40
[2024-06-23 15:20:22] 2024-06-23 13:20:04,565 | INFO     | model: linear, x: [1719102232.0, 1719102293.0, 1719102354.0, 1719102415.0, 1719102476.0, 1719102537.0, 1719102598.0, 1719102659.0, 1719102720.0, 1719102781.0, 1719
[2024-06-23 15:20:22] 2024-06-23 13:20:04,565 | INFO     | sum of square deviations: 135047106969.5
[2024-06-23 15:20:22] 2024-06-23 13:20:04,581 | INFO     | sum of deviations: 120771424040.49997
[2024-06-23 15:20:22] 2024-06-23 13:20:04,581 | INFO     | mean x: 1719125320.5
[2024-06-23 15:20:22] 2024-06-23 13:20:04,581 | INFO     | mean y: 2384306.610817942
[2024-06-23 15:20:22] 2024-06-23 13:20:04,581 | INFO     | -- intersect: -1535014144.3442001
[2024-06-23 15:20:22] 2024-06-23 13:20:04,581 | INFO     | intersect: -1535014144.3442001
[2024-06-23 15:20:22] 2024-06-23 13:20:04,582 | INFO     | chi2: 0.009648704715454091
[2024-06-23 15:20:22] 2024-06-23 13:20:04,583 | INFO     | -- intersect: -1535014144.3442001
[2024-06-23 15:20:22] 2024-06-23 13:20:04,583 | INFO     | current memory leak: 0.89 B/s (using 758 data points, chi2=0.01)
[2024-06-23 15:20:22] 2024-06-23 13:20:04,584 | INFO     | ..............................
[2024-06-23 15:20:22] 2024-06-23 13:20:04,584 | INFO     | . Timing measurements:
[2024-06-23 15:20:22] 2024-06-23 13:20:04,584 | INFO     | . get job = 0 s
[2024-06-23 15:20:22] 2024-06-23 13:20:04,584 | INFO     | . initial setup = 1 s
[2024-06-23 15:20:22] 2024-06-23 13:20:04,584 | INFO     | . payload setup = 22 s
[2024-06-23 15:20:22] 2024-06-23 13:20:04,585 | INFO     | . stage-in = 0 s
[2024-06-23 15:20:22] 2024-06-23 13:20:04,585 | INFO     | . payload execution = 49015 s
[2024-06-23 15:20:22] 2024-06-23 13:20:04,585 | INFO     | . stage-out = 1 s
[2024-06-23 15:20:22] 2024-06-23 13:20:04,585 | INFO     | . log creation = 0 s
[2024-06-23 15:20:22] 2024-06-23 13:20:04,585 | INFO     | ..............................
[2024-06-23 15:20:22] 2024-06-23 13:20:04,787 | INFO     | 
[2024-06-23 15:20:22] 2024-06-23 13:20:04,787 | INFO     | job summary report
[2024-06-23 15:20:22] 2024-06-23 13:20:04,787 | INFO     | --------------------------------------------------
[2024-06-23 15:20:22] 2024-06-23 13:20:04,787 | INFO     | PanDA job id: 6238801138
[2024-06-23 15:20:22] 2024-06-23 13:20:04,788 | INFO     | task id: 38921007
[2024-06-23 15:20:22] 2024-06-23 13:20:04,788 | INFO     | errors: (none)
[2024-06-23 15:20:22] 2024-06-23 13:20:04,788 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-23 15:20:22] 2024-06-23 13:20:04,788 | INFO     | pilot state: finished 
[2024-06-23 15:20:22] 2024-06-23 13:20:04,788 | INFO     | transexitcode: 0
[2024-06-23 15:20:22] 2024-06-23 13:20:04,788 | INFO     | exeerrorcode: 0
[2024-06-23 15:20:22] 2024-06-23 13:20:04,788 | INFO     | exeerrordiag: 
[2024-06-23 15:20:22] 2024-06-23 13:20:04,789 | INFO     | exitcode: 0
[2024-06-23 15:20:22] 2024-06-23 13:20:04,789 | INFO     | exitmsg: OK
[2024-06-23 15:20:22] 2024-06-23 13:20:04,789 | INFO     | cpuconsumptiontime: 186964 s
[2024-06-23 15:20:22] 2024-06-23 13:20:04,789 | INFO     | nevents: 400
[2024-06-23 15:20:22] 2024-06-23 13:20:04,789 | INFO     | neventsw: 0
[2024-06-23 15:20:22] 2024-06-23 13:20:04,789 | INFO     | pid: 1169911
[2024-06-23 15:20:22] 2024-06-23 13:20:04,789 | INFO     | pgrp: 1169911
[2024-06-23 15:20:22] 2024-06-23 13:20:04,789 | INFO     | corecount: 4
[2024-06-23 15:20:22] 2024-06-23 13:20:04,789 | INFO     | event service: False
[2024-06-23 15:20:22] 2024-06-23 13:20:04,790 | INFO     | sizes: {0: 2386925, 1: 2387124, 12: 2387124, 14: 2387358, 23: 2387386, 49041: 2433857, 49042: 2433984, 49044: 2443022, 49046: 2443078, 49055: 2443248}
[2024-06-23 15:20:22] 2024-06-23 13:20:04,790 | INFO     | --------------------------------------------------
[2024-06-23 15:20:22] 2024-06-23 13:20:04,790 | INFO     | 
[2024-06-23 15:20:22] 2024-06-23 13:20:04,790 | INFO     | executing command: ls -lF /scratch/boinc/var/slot28/slots/0
[2024-06-23 15:20:22] 2024-06-23 13:20:04,810 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-23 15:20:22] 2024-06-23 13:20:04,811 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-23 15:20:22] 2024-06-23 13:20:04,811 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-23 15:20:22] 2024-06-23 13:20:04,811 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-23 15:20:22] 2024-06-23 13:20:04,811 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-23 15:20:22] 2024-06-23 13:20:04,811 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-23 15:20:22] 2024-06-23 13:20:04,811 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-23 15:20:22] 2024-06-23 13:20:04,811 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-23 15:20:22] 2024-06-23 13:20:04,811 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-23 15:20:22] 2024-06-23 13:20:04,812 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-23 15:20:22] 2024-06-23 13:20:04,812 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-23 15:20:22] 2024-06-23 13:20:04,812 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-23 15:20:22] 2024-06-23 13:20:04,812 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-23 15:20:22] 2024-06-23 13:20:04,812 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-23 15:20:22] 2024-06-23 13:20:04,812 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-23 15:20:22] 2024-06-23 13:20:04,812 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-23 15:20:22] 2024-06-23 13:20:04,812 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-23 15:20:22] 2024-06-23 13:20:04,813 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-23 15:20:22] 2024-06-23 13:20:04,813 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-23 15:20:22] 2024-06-23 13:20:04,813 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-23 15:20:22] 2024-06-23 13:20:04,813 | INFO     | job 6238801138 has completed (purged errors)
[2024-06-23 15:20:22] 2024-06-23 13:20:04,813 | INFO     | overall cleanup function is called
[2024-06-23 15:20:22] 2024-06-23 13:20:05,821 | INFO     | --- collectZombieJob: --- 10, [1169911]
[2024-06-23 15:20:22] 2024-06-23 13:20:05,821 | INFO     | zombie collector waiting for pid 1169911
[2024-06-23 15:20:22] 2024-06-23 13:20:05,821 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-23 15:20:22] 2024-06-23 13:20:06,826 | INFO     | collected zombie processes
[2024-06-23 15:20:22] 2024-06-23 13:20:06,826 | INFO     | will now attempt to kill all subprocesses of pid=1169911
[2024-06-23 15:20:22] 2024-06-23 13:20:06,962 | INFO     | process IDs to be killed: [1169911] (in reverse order)
[2024-06-23 15:20:22] 2024-06-23 13:20:07,061 | WARNING  | found no corresponding commands to process id(s)
[2024-06-23 15:20:22] 2024-06-23 13:20:07,061 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-23 15:20:22] 2024-06-23 13:20:07,068 | INFO     | did not find any defunct processes belonging to 1169911
[2024-06-23 15:20:22] 2024-06-23 13:20:07,073 | INFO     | did not find any defunct processes belonging to 1169911
[2024-06-23 15:20:22] 2024-06-23 13:20:07,073 | INFO     | ready for new job
[2024-06-23 15:20:22] 2024-06-23 13:20:07,073 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-23 15:20:22] 2024-06-23 13:20:07,077 | INFO     | *************************************
[2024-06-23 15:20:22] 2024-06-23 13:20:07,077 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-23 15:20:22] 2024-06-23 13:20:07,077 | INFO     | *************************************
[2024-06-23 15:20:22] 2024-06-23 13:20:07,077 | INFO     | 
[2024-06-23 15:20:22] 2024-06-23 13:20:07,079 | INFO     | architecture information:
[2024-06-23 15:20:22] 2024-06-23 13:20:07,079 | INFO     | executing command: cat /etc/os-release
[2024-06-23 15:20:22] 2024-06-23 13:20:07,093 | INFO     | cat /etc/os-release:
[2024-06-23 15:20:22] NAME="CentOS Linux"
[2024-06-23 15:20:22] VERSION="7 (Core)"
[2024-06-23 15:20:22] ID="centos"
[2024-06-23 15:20:22] ID_LIKE="rhel fedora"
[2024-06-23 15:20:22] VERSION_ID="7"
[2024-06-23 15:20:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-23 15:20:22] ANSI_COLOR="0;31"
[2024-06-23 15:20:22] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-23 15:20:22] HOME_URL="https://www.centos.org/"
[2024-06-23 15:20:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-23 15:20:22] 
[2024-06-23 15:20:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-23 15:20:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-23 15:20:22] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-23 15:20:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-23 15:20:22] 
[2024-06-23 15:20:22] 2024-06-23 13:20:07,094 | INFO     | *************************************
[2024-06-23 15:20:22] 2024-06-23 13:20:07,596 | INFO     | executing command: df -mP /scratch/boinc/var/slot28/slots/0
[2024-06-23 15:20:22] 2024-06-23 13:20:07,620 | INFO     | sufficient remaining disk space (1667297705984 B)
[2024-06-23 15:20:22] 2024-06-23 13:20:07,620 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-23 15:20:22] 2024-06-23 13:20:07,620 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-23 15:20:22] 2024-06-23 13:20:07,621 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-06-23 15:20:22] 2024-06-23 13:20:07,621 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-23 15:20:22] 2024-06-23 13:20:07,621 | INFO     | found 0 job(s) in 20 queues
[2024-06-23 15:20:22] 2024-06-23 13:20:07,622 | INFO     | aborting loop
[2024-06-23 15:20:22] 2024-06-23 13:20:07,622 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-23 15:20:22] 2024-06-23 13:20:07,622 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-23 15:20:22] 2024-06-23 13:20:07,634 | INFO     | all payload control threads have been joined
[2024-06-23 15:20:22] 2024-06-23 13:20:07,699 | INFO     | all data control threads have been joined
[2024-06-23 15:20:22] 2024-06-23 13:20:08,626 | INFO     | [job] retrieve thread has finished
[2024-06-23 15:20:22] 2024-06-23 13:20:08,627 | INFO     | [job] job monitor thread has finished
[2024-06-23 15:20:22] 2024-06-23 13:20:08,639 | INFO     | [payload] control thread has finished
[2024-06-23 15:20:22] 2024-06-23 13:20:08,704 | INFO     | [data] control thread has finished
[2024-06-23 15:20:22] 2024-06-23 13:20:08,707 | INFO     | [payload] execute_payloads thread has finished
[2024-06-23 15:20:22] 2024-06-23 13:20:08,771 | INFO     | [payload] validate_post thread has finished
[2024-06-23 15:20:22] 2024-06-23 13:20:08,912 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-23 15:20:22] 2024-06-23 13:20:08,928 | INFO     | all job control threads have been joined
[2024-06-23 15:20:22] 2024-06-23 13:20:09,198 | INFO     | [payload] failed_post thread has finished
[2024-06-23 15:20:22] 2024-06-23 13:20:09,251 | INFO     | [data] copytool_in thread has finished
[2024-06-23 15:20:22] 2024-06-23 13:20:09,275 | INFO     | [job] create_data_payload thread has finished
[2024-06-23 15:20:22] 2024-06-23 13:20:09,364 | INFO     | [job] validate thread has finished
[2024-06-23 15:20:22] 2024-06-23 13:20:09,385 | INFO     | [payload] validate_pre thread has finished
[2024-06-23 15:20:22] 2024-06-23 13:20:09,707 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-23 15:20:22] 2024-06-23 13:20:09,892 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-23 15:20:22] 2024-06-23 13:20:09,933 | INFO     | [job] control thread has finished
[2024-06-23 15:20:22] 2024-06-23 13:20:10,430 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-23 15:20:22] 2024-06-23 13:20:10,712 | INFO     | [job] queue monitor thread has finished
[2024-06-23 15:20:22] 2024-06-23 13:20:10,917 | INFO     | [data] copytool_out thread has finished
[2024-06-23 15:20:22] 2024-06-23 13:20:14,435 | INFO     | [data] queue_monitor thread has finished
[2024-06-23 15:20:22] 2024-06-23 13:20:16,140 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47423112348736)>', '<ExcThread(monitor, started 47423376373504)>']
[2024-06-23 15:20:22] 2024-06-23 13:20:16,666 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-23 15:20:22] 2024-06-23 13:20:16,666 | INFO     | [monitor] control thread has ended
[2024-06-23 15:20:22] 2024-06-23 13:20:21,165 | INFO     | all workflow threads have been joined
[2024-06-23 15:20:22] 2024-06-23 13:20:21,165 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-23 15:20:22] 2024-06-23 13:20:21,166 | INFO     | traces error code: 0
[2024-06-23 15:20:22] 2024-06-23 13:20:21,166 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-23 15:20:22] 2024-06-23 13:20:21,283 [wrapper] ==== pilot stdout END ====
[2024-06-23 15:20:22] 2024-06-23 13:20:21,286 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-23 15:20:22] 2024-06-23 13:20:21,288 [wrapper] pilotpid: 1162634
[2024-06-23 15:20:22] 2024-06-23 13:20:21,295 [wrapper] Pilot exit status: 0
[2024-06-23 15:20:22] 2024-06-23 13:20:21,355 [wrapper] pandaids: 6238801138
[2024-06-23 15:20:22] 2024-06-23 13:20:21,409 [wrapper] cleanup supervisor_pilot 2329706 1162635
[2024-06-23 15:20:22] 2024-06-23 13:20:21,411 [wrapper] Test setup, not cleaning
[2024-06-23 15:20:22] 2024-06-23 13:20:21,414 [wrapper] ==== wrapper stdout END ====
[2024-06-23 15:20:22] 2024-06-23 13:20:21,416 [wrapper] ==== wrapper stderr END ====
[2024-06-23 15:20:22] 2024-06-23 13:20:21,443 [wrapper] apfmon messages muted
[2024-06-23 15:20:22]  *** Error codes and diagnostics ***
[2024-06-23 15:20:22]     "exeErrorCode": 0,
[2024-06-23 15:20:22]     "exeErrorDiag": "",
[2024-06-23 15:20:22]     "pilotErrorCode": 0,
[2024-06-23 15:20:22]     "pilotErrorDiag": "",
[2024-06-23 15:20:22]  *** Listing of results directory ***
[2024-06-23 15:20:22] total 937240
[2024-06-23 15:20:22] -rw-r--r-- 1 boinc boinc    469766 Jun 20 09:40 pilot3.tar.gz
[2024-06-23 15:20:22] -rw-r--r-- 1 boinc boinc      5654 Jun 20 09:49 queuedata.json
[2024-06-23 15:20:22] -rwx------ 1 boinc boinc     32308 Jun 20 09:50 runpilot2-wrapper.sh
[2024-06-23 15:20:22] -rw-r--r-- 1 boinc boinc       100 Jun 23 01:41 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-23 15:20:22] -rwxr-xr-x 1 boinc boinc      7986 Jun 23 01:41 run_atlas
[2024-06-23 15:20:22] -rw-r--r-- 1 boinc boinc       105 Jun 23 01:41 job.xml
[2024-06-23 15:20:22] -rw-r--r-- 1 boinc boinc      6455 Jun 23 01:41 init_data.xml
[2024-06-23 15:20:22] -rw-r--r-- 2 boinc boinc 584496401 Jun 23 01:41 EVNT.38776201._000899.pool.root.1
[2024-06-23 15:20:22] -rw-r--r-- 2 boinc boinc    482534 Jun 23 01:41 input.tar.gz
[2024-06-23 15:20:22] drwxrwx--x 2 boinc boinc      4096 Jun 23 01:41 shared
[2024-06-23 15:20:22] -rw-r--r-- 2 boinc boinc     17537 Jun 23 01:41 start_atlas.sh
[2024-06-23 15:20:22] -rw-r--r-- 1 boinc boinc         0 Jun 23 01:41 boinc_lockfile
[2024-06-23 15:20:22] -rw-r--r-- 1 boinc boinc      2629 Jun 23 01:41 pandaJob.out
[2024-06-23 15:20:22] -rw------- 1 boinc boinc       424 Jun 23 01:41 setup.sh.local
[2024-06-23 15:20:22] -rw------- 1 boinc boinc   1025761 Jun 23 01:41 agis_schedconf.cvmfs.json
[2024-06-23 15:20:22] -rw------- 1 boinc boinc   1321363 Jun 23 01:41 cric_ddmendpoints.json
[2024-06-23 15:20:22] drwx------ 4 boinc boinc      4096 Jun 23 01:41 pilot3
[2024-06-23 15:20:22] -rw------- 1 boinc boinc 357988595 Jun 23 15:19 HITS.38921007._051110.pool.root.1
[2024-06-23 15:20:22] -rw-r--r-- 1 boinc boinc       533 Jun 23 15:19 boinc_task_state.xml
[2024-06-23 15:20:22] -rw------- 1 boinc boinc      1043 Jun 23 15:19 memory_monitor_summary.json
[2024-06-23 15:20:22] -rw------- 1 boinc boinc         0 Jun 23 15:19 agis_ddmendpoints.agis.ALL.json
[2024-06-23 15:20:22] -rw------- 1 boinc boinc    737545 Jun 23 15:19 log.38921007._051110.job.log.tgz.1
[2024-06-23 15:20:22] -rw------- 1 boinc boinc        95 Jun 23 15:19 pilot_heartbeat.json
[2024-06-23 15:20:22] -rw------- 1 boinc boinc      7769 Jun 23 15:20 heartbeat.json
[2024-06-23 15:20:22] -rw------- 1 boinc boinc      4345 Jun 23 15:20 pilotlog.txt
[2024-06-23 15:20:22] -rw------- 1 boinc boinc   6116400 Jun 23 15:20 log.38921007._051110.job.log.1
[2024-06-23 15:20:22] -rw------- 1 boinc boinc       357 Jun 23 15:20 output.list
[2024-06-23 15:20:22] -rw-r--r-- 1 boinc boinc       620 Jun 23 15:20 runtime_log
[2024-06-23 15:20:22] -rw------- 1 boinc boinc   6871040 Jun 23 15:20 result.tar.gz
[2024-06-23 15:20:22] -rw-r--r-- 1 boinc boinc     11410 Jun 23 15:20 runtime_log.err
[2024-06-23 15:20:22] -rw------- 1 boinc boinc       661 Jun 23 15:20 XcjLDmujRe5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDm1ykKDmjXWG1n.diag
[2024-06-23 15:20:22] -rw-r--r-- 1 boinc boinc      8192 Jun 23 15:20 boinc_mmap_file
[2024-06-23 15:20:22] -rw-r--r-- 1 boinc boinc        29 Jun 23 15:20 wrapper_checkpoint.txt
[2024-06-23 15:20:22] -rw-r--r-- 1 boinc boinc     21384 Jun 23 15:20 stderr.txt
[2024-06-23 15:20:22] HITS file was successfully produced:
[2024-06-23 15:20:22] -rw------- 1 boinc boinc 357988595 Jun 23 15:19 shared/HITS.pool.root.1
[2024-06-23 15:20:22]  *** Contents of shared directory: ***
[2024-06-23 15:20:22] total 927612
[2024-06-23 15:20:22] -rw-r--r-- 2 boinc boinc 584496401 Jun 23 01:41 ATLAS.root_0
[2024-06-23 15:20:22] -rw-r--r-- 2 boinc boinc    482534 Jun 23 01:41 input.tar.gz
[2024-06-23 15:20:22] -rw-r--r-- 2 boinc boinc     17537 Jun 23 01:41 start_atlas.sh
[2024-06-23 15:20:22] -rw------- 1 boinc boinc 357988595 Jun 23 15:19 HITS.pool.root.1
[2024-06-23 15:20:22] -rw------- 1 boinc boinc   6871040 Jun 23 15:20 result.tar.gz
15:20:24 (1158308): run_atlas exited; CPU time 186545.642605
15:20:24 (1158308): called boinc_finish(0)

</stderr_txt>
]]>

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