Stderr output

<core_client_version>8.0.3</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-20 15:27:08 (587005): Detected: vboxwrapper 26206
2024-06-20 15:27:08 (587005): Detected: BOINC client v8.0.3
2024-06-20 15:27:09 (587005): Detected: VirtualBox VboxManage Interface (Version: 7.0.16)
2024-06-20 15:27:09 (587005): Successfully copied 'init_data.xml' to the shared directory.
2024-06-20 15:27:09 (587005): Create VM. (boinc_5f72224e692f39d9, slot#9)
2024-06-20 15:27:09 (587005): Setting Memory Size for VM. (4096MB)
2024-06-20 15:27:09 (587005): Setting CPU Count for VM. (1)
2024-06-20 15:27:09 (587005): Setting Chipset Options for VM.
2024-06-20 15:27:09 (587005): Setting Graphics Controller Options for VM.
2024-06-20 15:27:09 (587005): Setting Boot Options for VM.
2024-06-20 15:27:09 (587005): Setting Network Configuration for NAT.
2024-06-20 15:27:09 (587005): Enabling VM Network Access.
2024-06-20 15:27:09 (587005): Disabling USB Support for VM.
2024-06-20 15:27:10 (587005): Disabling COM Port Support for VM.
2024-06-20 15:27:10 (587005): Disabling LPT Port Support for VM.
2024-06-20 15:27:10 (587005): Disabling Audio Support for VM.
2024-06-20 15:27:10 (587005): Disabling Clipboard Support for VM.
2024-06-20 15:27:10 (587005): Disabling Drag and Drop Support for VM.
2024-06-20 15:27:10 (587005): Adding storage controller(s) to VM.
2024-06-20 15:27:10 (587005): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-20 15:27:10 (587005): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-20 15:27:10 (587005): forwarding host port 37213 to guest port 80
2024-06-20 15:27:10 (587005): Enabling remote desktop for VM.
2024-06-20 15:27:11 (587005): Enabling shared directory for VM.
2024-06-20 15:27:11 (587005): Starting VM using VBoxManage interface. (boinc_5f72224e692f39d9, slot#9)
2024-06-20 15:27:12 (587005): Successfully started VM. (PID = '587393')
2024-06-20 15:27:12 (587005): Reporting VM Process ID to BOINC.
2024-06-20 15:27:12 (587005): Guest Log: BIOS: VirtualBox 7.0.16
2024-06-20 15:27:12 (587005): Guest Log: CPUID EDX: 0x178bfbff
2024-06-20 15:27:12 (587005): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-20 15:27:12 (587005): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-20 15:27:12 (587005): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-20 15:27:12 (587005): Detected: Web Application Enabled (http://localhost:37213)
2024-06-20 15:27:12 (587005): Detected: Remote Desktop Enabled (localhost:38519)
2024-06-20 15:27:12 (587005): Preference change detected
2024-06-20 15:27:12 (587005): Setting CPU throttle for VM. (100%)
2024-06-20 15:27:12 (587005): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-20 15:27:14 (587005): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-20 15:27:14 (587005): Guest Log: BIOS: Booting from Hard Disk...
2024-06-20 15:27:17 (587005): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-20 15:27:17 (587005): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-20 15:27:17 (587005): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-20 15:27:17 (587005): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-20 15:27:17 (587005): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-20 15:27:17 (587005): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-20 15:27:17 (587005): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-20 15:27:17 (587005): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-20 15:27:17 (587005): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-20 15:27:17 (587005): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-20 15:27:17 (587005): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-20 15:27:17 (587005): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-20 15:27:17 (587005): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-20 15:27:17 (587005): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-20 15:27:17 (587005): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-20 15:27:17 (587005): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-20 15:27:17 (587005): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-20 15:27:17 (587005): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-20 15:27:17 (587005): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-20 15:27:17 (587005): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-20 15:27:17 (587005): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-20 15:27:17 (587005): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-20 15:27:17 (587005): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-20 15:27:17 (587005): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-20 15:27:17 (587005): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-20 15:27:17 (587005): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-20 15:27:17 (587005): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-20 15:27:17 (587005): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-20 15:27:17 (587005): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-20 15:27:17 (587005): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-20 15:27:17 (587005): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-20 15:27:17 (587005): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-20 15:27:23 (587005): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-20 15:27:23 (587005): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-20 15:27:34 (587005): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-20 15:27:34 (587005): Guest Log: 00:00:00.000261 main     Log opened 2024-06-20T13:27:33.059084000Z
2024-06-20 15:27:34 (587005): Guest Log: 00:00:00.000485 main     OS Product: Linux
2024-06-20 15:27:34 (587005): Guest Log: 00:00:00.000564 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-20 15:27:34 (587005): Guest Log: 00:00:00.000630 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-20 15:27:34 (587005): Guest Log: 00:00:00.000696 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-20 15:27:34 (587005): Guest Log: 00:00:00.000697 main     Process ID: 1235
2024-06-20 15:27:34 (587005): Guest Log: 00:00:00.000698 main     Package type: LINUX_64BITS_GENERIC
2024-06-20 15:27:34 (587005): Guest Log: 00:00:00.003337 main     5.2.32 r132073 started. Verbose level = 0
2024-06-20 15:27:35 (587005): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-20 15:27:35 (587005): Guest Log: [INFO] Mounting shared directory
2024-06-20 15:27:35 (587005): Guest Log: [INFO] Checking for init_data.xml
2024-06-20 15:27:55 (587005): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-20 15:27:55 (587005): Guest Log: [INFO] Detected branch: prod
2024-06-20 15:27:55 (587005): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-20 15:27:55 (587005): Guest Log: Copying input files
2024-06-20 15:28:00 (587005): Guest Log: Copied input files into RunAtlas.
2024-06-20 15:28:00 (587005): Guest Log: Detected user-configured HTTP proxy at http://localhost:3128 - will set in /etc/cvmfs/default.local
2024-06-20 15:28:26 (587005): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-20 15:28:26 (587005): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-20 15:28:26 (587005): Guest Log: 2.6.3.0 1510 0 31576 134088 4 1 3117205 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.161.84:3126 1
2024-06-20 15:28:27 (587005): Guest Log: copied the webapp to /var/www
2024-06-20 15:28:27 (587005): Guest Log: core_number=1
2024-06-20 15:28:27 (587005): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-20 15:28:27 (587005): Guest Log:  *** Starting ATLAS job. (PandaID=6238783798 taskID=40024058) ***
2024-06-20 17:06:13 (587005): Status Report: Elapsed Time: '6000.000000'
2024-06-20 17:06:13 (587005): Status Report: CPU Time: '5203.350000'
2024-06-20 18:45:13 (587005): Status Report: Elapsed Time: '12000.000000'
2024-06-20 18:45:13 (587005): Status Report: CPU Time: '11142.790000'
2024-06-20 20:24:14 (587005): Status Report: Elapsed Time: '18000.000000'
2024-06-20 20:24:14 (587005): Status Report: CPU Time: '17083.600000'
2024-06-20 22:03:14 (587005): Status Report: Elapsed Time: '24000.000000'
2024-06-20 22:03:14 (587005): Status Report: CPU Time: '23031.210000'
2024-06-20 23:42:15 (587005): Status Report: Elapsed Time: '30000.000000'
2024-06-20 23:42:15 (587005): Status Report: CPU Time: '28979.500000'
2024-06-21 01:21:16 (587005): Status Report: Elapsed Time: '36000.000000'
2024-06-21 01:21:16 (587005): Status Report: CPU Time: '34927.020000'
2024-06-21 03:00:16 (587005): Status Report: Elapsed Time: '42000.000000'
2024-06-21 03:00:16 (587005): Status Report: CPU Time: '40865.600000'
2024-06-21 04:39:17 (587005): Status Report: Elapsed Time: '48000.000000'
2024-06-21 04:39:17 (587005): Status Report: CPU Time: '46813.210000'
2024-06-21 06:18:17 (587005): Status Report: Elapsed Time: '54000.000000'
2024-06-21 06:18:17 (587005): Status Report: CPU Time: '52761.720000'
2024-06-21 07:00:03 (587005): Guest Log:  *** Job finished ***
2024-06-21 07:00:03 (587005): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-21 07:00:03 (587005): Guest Log: 2024-06-21 04:59:50,534 | INFO     | [data] queue_monitor thread has finished
2024-06-21 07:00:03 (587005): Guest Log: 2024-06-21 04:59:56,780 | INFO     | job.realtimelogging is not enabled
2024-06-21 07:00:03 (587005): Guest Log: 2024-06-21 04:59:57,782 | INFO     | [payload] run_realtimelog thread has finished
2024-06-21 07:00:03 (587005): Guest Log: 2024-06-21 04:59:58,407 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140626512185152)>', '<ExcThread(monitor, started 140626062460672)>']
2024-06-21 07:00:03 (587005): Guest Log: 2024-06-21 04:59:58,428 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-21 07:00:03 (587005): Guest Log: 2024-06-21 04:59:58,428 | INFO     | [monitor] control thread has ended
2024-06-21 07:00:03 (587005): Guest Log: 2024-06-21 05:00:03,413 | INFO     | all workflow threads have been joined
2024-06-21 07:00:03 (587005): Guest Log: 2024-06-21 05:00:03,413 | INFO     | end of generic workflow (traces error code: 0)
2024-06-21 07:00:04 (587005): Guest Log: 2024-06-21 05:00:03,413 | INFO     | traces error code: 0
2024-06-21 07:00:04 (587005): Guest Log: 2024-06-21 05:00:03,413 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-21 07:00:04 (587005): Guest Log: 2024-06-21 05:00:03,515 [wrapper] ==== pilot stdout END ====
2024-06-21 07:00:04 (587005): Guest Log: 2024-06-21 05:00:03,520 [wrapper] ==== wrapper stdout RESUME ====
2024-06-21 07:00:04 (587005): Guest Log: 2024-06-21 05:00:03,525 [wrapper] pilotpid: 6364
2024-06-21 07:00:04 (587005): Guest Log: 2024-06-21 05:00:03,530 [wrapper] Pilot exit status: 0
2024-06-21 07:00:04 (587005): Guest Log: 2024-06-21 05:00:03,613 [wrapper] pandaids: 6238783798
2024-06-21 07:00:04 (587005): Guest Log: 2024-06-21 05:00:03,650 [wrapper] cleanup supervisor_pilot 24250 6365
2024-06-21 07:00:04 (587005): Guest Log: 2024-06-21 05:00:03,656 [wrapper] Test setup, not cleaning
2024-06-21 07:00:04 (587005): Guest Log: 2024-06-21 05:00:03,660 [wrapper] ==== wrapper stdout END ====
2024-06-21 07:00:04 (587005): Guest Log: 2024-06-21 05:00:03,665 [wrapper] ==== wrapper stderr END ====
2024-06-21 07:00:04 (587005): Guest Log: 2024-06-21 05:00:03,676 [wrapper] apfmon messages muted
2024-06-21 07:00:04 (587005): Guest Log:  *** Error codes and diagnostics ***
2024-06-21 07:00:04 (587005): Guest Log:     "exeErrorCode": 0,
2024-06-21 07:00:04 (587005): Guest Log:     "exeErrorDiag": "",
2024-06-21 07:00:04 (587005): Guest Log:     "pilotErrorCode": 0,
2024-06-21 07:00:04 (587005): Guest Log:     "pilotErrorDiag": "",
2024-06-21 07:00:04 (587005): Guest Log:  *** Listing of results directory ***
2024-06-21 07:00:04 (587005): Guest Log: total 283840
2024-06-21 07:00:04 (587005): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 20 06:26 pilot3.tar.gz
2024-06-21 07:00:04 (587005): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 20 06:48 queuedata.json
2024-06-21 07:00:04 (587005): Guest Log: -rwx------. 1 atlas atlas     32308 Jun 20 06:48 runpilot2-wrapper.sh
2024-06-21 07:00:04 (587005): Guest Log: -rw-r--r--. 1 atlas atlas      9682 Jun 20 13:27 init_data.xml
2024-06-21 07:00:04 (587005): Guest Log: -rw-r--r--. 1 atlas atlas    482486 Jun 20 13:27 input.tar.gz
2024-06-21 07:00:04 (587005): Guest Log: -rw-r--r--. 1 atlas atlas     17537 Jun 20 13:27 start_atlas.sh
2024-06-21 07:00:04 (587005): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 20 13:27 EVNT.40024055._000001.pool.root.1 -> /data/./ATLAS.root_0
2024-06-21 07:00:04 (587005): Guest Log: -rw-r--r--. 1 atlas atlas      2540 Jun 20 13:28 pandaJob.out
2024-06-21 07:00:04 (587005): Guest Log: -rw-------. 1 atlas atlas       456 Jun 20 13:28 setup.sh.local
2024-06-21 07:00:04 (587005): Guest Log: -rw-------. 1 atlas atlas   1015545 Jun 20 13:30 agis_schedconf.cvmfs.json
2024-06-21 07:00:04 (587005): Guest Log: -rw-------. 1 atlas atlas   1321254 Jun 20 13:30 cric_ddmendpoints.json
2024-06-21 07:00:04 (587005): Guest Log: drwx------. 4 atlas atlas      4096 Jun 20 13:30 pilot3
2024-06-21 07:00:04 (587005): Guest Log: -rw-------. 1 atlas atlas 271363839 Jun 21 04:58 HITS.40024058._000001.pool.root.1
2024-06-21 07:00:04 (587005): Guest Log: -rw-------. 1 atlas atlas      1021 Jun 21 04:58 memory_monitor_summary.json
2024-06-21 07:00:04 (587005): Guest Log: -rw-------. 1 atlas atlas         0 Jun 21 04:59 agis_ddmendpoints.agis.ALL.json
2024-06-21 07:00:04 (587005): Guest Log: -rw-------. 1 atlas atlas    744508 Jun 21 04:59 log.40024058._000001.job.log.tgz.1
2024-06-21 07:00:04 (587005): Guest Log: -rw-------. 1 atlas atlas        95 Jun 21 04:59 pilot_heartbeat.json
2024-06-21 07:00:04 (587005): Guest Log: -rw-------. 1 atlas atlas      7713 Jun 21 04:59 heartbeat.json
2024-06-21 07:00:04 (587005): Guest Log: -rw-------. 1 atlas atlas      4466 Jun 21 05:00 pilotlog.txt
2024-06-21 07:00:04 (587005): Guest Log: -rw-------. 1 atlas atlas   7170128 Jun 21 05:00 log.40024058._000001.job.log.1
2024-06-21 07:00:04 (587005): Guest Log: -rw-------. 1 atlas atlas       357 Jun 21 05:00 output.list
2024-06-21 07:00:04 (587005): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 21 05:00 runtime_log
2024-06-21 07:00:04 (587005): Guest Log: -rw-------. 1 atlas atlas   7936000 Jun 21 05:00 result.tar.gz
2024-06-21 07:00:04 (587005): Guest Log: -rw-r--r--. 1 atlas atlas     11143 Jun 21 05:00 runtime_log.err
2024-06-21 07:00:04 (587005): Guest Log: -rw-------. 1 atlas atlas       646 Jun 21 05:00 bNCMDmKmQe5n9Rq4apOajLDm4fhM0noT9bVo2ijZDmq9WKDmkyJ3vm.diag
2024-06-21 07:00:04 (587005): Guest Log: Looking for outputfile HITS.40024058._000001.pool.root.1
2024-06-21 07:00:04 (587005): Guest Log: HITS file was successfully produced
2024-06-21 07:00:04 (587005): Guest Log: -rw-------. 1 atlas atlas 271363839 Jun 21 04:58 /home/atlas/RunAtlas/HITS.40024058._000001.pool.root.1
2024-06-21 07:00:04 (587005): Guest Log: Successfully finished the ATLAS job!
2024-06-21 07:00:04 (587005): Guest Log: Copying the results back to the shared directory!
2024-06-21 07:00:04 (587005): Guest Log:  *** Contents of shared directory: ***
2024-06-21 07:00:04 (587005): Guest Log: total 608584
2024-06-21 07:00:04 (587005): Guest Log: -rw-r--r--. 1 root root 614730425 Jun 20 13:27 ATLAS.root_0
2024-06-21 07:00:04 (587005): Guest Log: -rw-r--r--. 1 root root      9682 Jun 20 13:27 init_data.xml
2024-06-21 07:00:04 (587005): Guest Log: -rw-r--r--. 1 root root    482486 Jun 20 13:27 input.tar.gz
2024-06-21 07:00:04 (587005): Guest Log: -rw-r--r--. 1 root root   7936000 Jun 21 05:00 result.tar.gz
2024-06-21 07:00:04 (587005): Guest Log: -rw-r--r--. 1 root root     17537 Jun 20 13:27 start_atlas.sh
2024-06-21 07:00:04 (587005): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-21 07:00:04 (587005): VM Completion File Detected.
2024-06-21 07:00:04 (587005): Powering off VM.
2024-06-21 07:00:05 (587005): Successfully stopped VM.
2024-06-21 07:00:05 (587005): Deregistering VM. (boinc_5f72224e692f39d9, slot#9)
2024-06-21 07:00:05 (587005): Removing network bandwidth throttle group from VM.
2024-06-21 07:00:05 (587005): Removing VM from VirtualBox.
07:00:10 (587005): called boinc_finish(0)

</stderr_txt>
]]>

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