Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-22 18:54:45 (90484): Detected: vboxwrapper 26206
2024-06-22 18:54:45 (90484): Detected: BOINC client v7.24.1
2024-06-22 18:54:45 (90484): Detected: VirtualBox VboxManage Interface (Version: 6.1.34)
2024-06-22 18:54:46 (90484): Successfully copied 'init_data.xml' to the shared directory.
2024-06-22 18:54:46 (90484): Create VM. (boinc_6fcaf0768c78f6bc, slot#6)
2024-06-22 18:54:47 (90484): Setting Memory Size for VM. (4800MB)
2024-06-22 18:54:48 (90484): Setting CPU Count for VM. (8)
2024-06-22 18:54:48 (90484): Setting Chipset Options for VM.
2024-06-22 18:54:49 (90484): Setting Graphics Controller Options for VM.
2024-06-22 18:54:49 (90484): Setting Boot Options for VM.
2024-06-22 18:54:49 (90484): Setting Network Configuration for NAT.
2024-06-22 18:54:50 (90484): Enabling VM Network Access.
2024-06-22 18:54:50 (90484): Disabling USB Support for VM.
2024-06-22 18:54:50 (90484): Disabling COM Port Support for VM.
2024-06-22 18:54:50 (90484): Disabling LPT Port Support for VM.
2024-06-22 18:54:51 (90484): Disabling Audio Support for VM.
2024-06-22 18:54:51 (90484): Disabling Clipboard Support for VM.
2024-06-22 18:54:51 (90484): Disabling Drag and Drop Support for VM.
2024-06-22 18:54:52 (90484): Adding storage controller(s) to VM.
2024-06-22 18:54:52 (90484): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-22 18:54:52 (90484): Adding VirtualBox Guest Additions to VM.
2024-06-22 18:54:53 (90484): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-22 18:54:53 (90484): forwarding host port 55830 to guest port 80
2024-06-22 18:54:53 (90484): Enabling remote desktop for VM.
2024-06-22 18:54:54 (90484): Required extension pack not installed, remote desktop not enabled.
2024-06-22 18:54:54 (90484): Enabling shared directory for VM.
2024-06-22 18:54:54 (90484): Starting VM using VBoxManage interface. (boinc_6fcaf0768c78f6bc, slot#6)
2024-06-22 18:55:01 (90484): Successfully started VM. (PID = '99960')
2024-06-22 18:55:01 (90484): Reporting VM Process ID to BOINC.
2024-06-22 18:55:01 (90484): Guest Log: BIOS: VirtualBox 6.1.34
2024-06-22 18:55:01 (90484): Guest Log: CPUID EDX: 0x178bfbff
2024-06-22 18:55:01 (90484): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-22 18:55:01 (90484): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-22 18:55:01 (90484): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-22 18:55:01 (90484): Detected: Web Application Enabled (http://localhost:55830)
2024-06-22 18:55:01 (90484): Preference change detected
2024-06-22 18:55:01 (90484): Setting CPU throttle for VM. (100%)
2024-06-22 18:55:01 (90484): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-22 18:55:03 (90484): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-22 18:55:03 (90484): Guest Log: BIOS: Booting from Hard Disk...
2024-06-22 18:55:06 (90484): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-22 18:55:06 (90484): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-22 18:55:06 (90484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-22 18:55:06 (90484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-22 18:55:06 (90484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-22 18:55:06 (90484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-22 18:55:06 (90484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-22 18:55:06 (90484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-22 18:55:06 (90484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-22 18:55:06 (90484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-22 18:55:06 (90484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-22 18:55:06 (90484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-22 18:55:06 (90484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-22 18:55:06 (90484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-22 18:55:06 (90484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-22 18:55:06 (90484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-22 18:55:06 (90484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-22 18:55:06 (90484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-22 18:55:06 (90484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-22 18:55:06 (90484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-22 18:55:06 (90484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-22 18:55:06 (90484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-22 18:55:06 (90484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-22 18:55:06 (90484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-22 18:55:06 (90484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-22 18:55:06 (90484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-22 18:55:06 (90484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-22 18:55:06 (90484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-22 18:55:06 (90484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-22 18:55:06 (90484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-22 18:55:06 (90484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-22 18:55:06 (90484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-22 18:55:17 (90484): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-22 18:55:17 (90484): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-22 18:55:31 (90484): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-22 18:55:31 (90484): Guest Log: 00:00:00.000265 main     Log opened 2024-06-22T18:55:29.849504000Z
2024-06-22 18:55:31 (90484): Guest Log: 00:00:00.000422 main     OS Product: Linux
2024-06-22 18:55:31 (90484): Guest Log: 00:00:00.000517 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-22 18:55:31 (90484): Guest Log: 00:00:00.000573 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-22 18:55:31 (90484): Guest Log: 00:00:00.000628 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-22 18:55:31 (90484): Guest Log: 00:00:00.000629 main     Process ID: 1368
2024-06-22 18:55:31 (90484): Guest Log: 00:00:00.000631 main     Package type: LINUX_64BITS_GENERIC
2024-06-22 18:55:31 (90484): Guest Log: 00:00:00.001759 main     5.2.32 r132073 started. Verbose level = 0
2024-06-22 18:55:31 (90484): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-22 18:55:32 (90484): Guest Log: [INFO] Mounting shared directory
2024-06-22 18:55:32 (90484): Guest Log: [INFO] Checking for init_data.xml
2024-06-22 18:55:36 (90484): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-22 18:55:36 (90484): Guest Log: [INFO] Detected branch: prod
2024-06-22 18:55:36 (90484): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-22 18:55:36 (90484): Guest Log: Copying input files
2024-06-22 18:55:41 (90484): Guest Log: 00:00:10.004624 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 972 018 000ns (GuestNow=1 719 075 340 881 386 000 ns GuestLast=1 719 082 529 853 404 000 ns fSetTimeLastLoop=true )
2024-06-22 18:55:46 (90484): Guest Log: Copied input files into RunAtlas.
2024-06-22 18:55:46 (90484): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-06-22 18:55:46 (90484): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-06-22 18:55:46 (90484): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-06-22 18:55:46 (90484): Guest Log: Further information can be found at the LHC@home message board.
2024-06-22 18:55:58 (90484): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-22 18:55:59 (90484): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-22 18:55:59 (90484): Guest Log: 2.6.3.0 1645 0 30176 134173 3 1 3117206 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2024-06-22 18:56:01 (90484): Guest Log: copied the webapp to /var/www
2024-06-22 18:56:01 (90484): Guest Log: ATHENA_PROC_NUMBER=8
2024-06-22 18:56:01 (90484): Guest Log: ATHENA_CORE_NUMBER=8
2024-06-22 18:56:02 (90484): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-22 18:56:02 (90484): Guest Log:  *** Starting ATLAS job. (PandaID=6238407585 taskID=38921001) ***
2024-06-22 20:35:05 (90484): Status Report: Elapsed Time: '6000.000000'
2024-06-22 20:35:05 (90484): Status Report: CPU Time: '37118.515625'
2024-06-22 22:15:09 (90484): Status Report: Elapsed Time: '12000.000000'
2024-06-22 22:15:09 (90484): Status Report: CPU Time: '84711.359375'
2024-06-22 23:55:14 (90484): Status Report: Elapsed Time: '18000.000000'
2024-06-22 23:55:14 (90484): Status Report: CPU Time: '132308.390625'
2024-06-23 01:35:18 (90484): Status Report: Elapsed Time: '24000.000000'
2024-06-23 01:35:18 (90484): Status Report: CPU Time: '179894.343750'
2024-06-23 02:18:46 (90484): Guest Log:  *** Job finished ***
2024-06-23 02:18:46 (90484): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-23 02:18:46 (90484): Guest Log: 2024-06-23 00:18:35,940 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2024-06-23 02:18:46 (90484): Guest Log: 2024-06-23 00:18:36,942 | INFO     | [job] queue monitor thread has finished
2024-06-23 02:18:46 (90484): Guest Log: 2024-06-23 00:18:38,238 | INFO     | [data] queue_monitor thread has finished
2024-06-23 02:18:46 (90484): Guest Log: 2024-06-23 00:18:39,981 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140362645600064)>', '<ExcThread(monitor, started 140362031011584)>']
2024-06-23 02:18:46 (90484): Guest Log: 2024-06-23 00:18:40,039 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-23 02:18:46 (90484): Guest Log: 2024-06-23 00:18:40,040 | INFO     | [monitor] control thread has ended
2024-06-23 02:18:46 (90484): Guest Log: 2024-06-23 00:18:44,988 | INFO     | all workflow threads have been joined
2024-06-23 02:18:46 (90484): Guest Log: 2024-06-23 00:18:44,988 | INFO     | end of generic workflow (traces error code: 0)
2024-06-23 02:18:46 (90484): Guest Log: 2024-06-23 00:18:44,988 | INFO     | traces error code: 0
2024-06-23 02:18:46 (90484): Guest Log: 2024-06-23 00:18:44,989 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-23 02:18:46 (90484): Guest Log: 2024-06-23 00:18:45,129 [wrapper] ==== pilot stdout END ====
2024-06-23 02:18:46 (90484): Guest Log: 2024-06-23 00:18:45,137 [wrapper] ==== wrapper stdout RESUME ====
2024-06-23 02:18:46 (90484): Guest Log: 2024-06-23 00:18:45,145 [wrapper] pilotpid: 6612
2024-06-23 02:18:46 (90484): Guest Log: 2024-06-23 00:18:45,151 [wrapper] Pilot exit status: 0
2024-06-23 02:18:46 (90484): Guest Log: 2024-06-23 00:18:45,225 [wrapper] pandaids: 6238407585
2024-06-23 02:18:46 (90484): Guest Log: 2024-06-23 00:18:45,275 [wrapper] cleanup supervisor_pilot  2152 6613
2024-06-23 02:18:46 (90484): Guest Log: 2024-06-23 00:18:45,284 [wrapper] Test setup, not cleaning
2024-06-23 02:18:46 (90484): Guest Log: 2024-06-23 00:18:45,292 [wrapper] ==== wrapper stdout END ====
2024-06-23 02:18:46 (90484): Guest Log: 2024-06-23 00:18:45,300 [wrapper] ==== wrapper stderr END ====
2024-06-23 02:18:46 (90484): Guest Log: 2024-06-23 00:18:45,315 [wrapper] apfmon messages muted
2024-06-23 02:18:46 (90484): Guest Log:  *** Error codes and diagnostics ***
2024-06-23 02:18:46 (90484): Guest Log:     "exeErrorCode": 0,
2024-06-23 02:18:46 (90484): Guest Log:     "exeErrorDiag": "",
2024-06-23 02:18:46 (90484): Guest Log:     "pilotErrorCode": 0,
2024-06-23 02:18:46 (90484): Guest Log:     "pilotErrorDiag": "",
2024-06-23 02:18:46 (90484): Guest Log:  *** Listing of results directory ***
2024-06-23 02:18:46 (90484): Guest Log: total 358060
2024-06-23 02:18:46 (90484): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 19 22:07 pilot3.tar.gz
2024-06-23 02:18:46 (90484): Guest Log: -rwx------. 1 atlas atlas     32308 Jun 19 22:18 runpilot2-wrapper.sh
2024-06-23 02:18:46 (90484): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 19 22:18 queuedata.json
2024-06-23 02:18:46 (90484): Guest Log: -rwxr-xr-x. 1 atlas atlas      9142 Jun 22 16:55 init_data.xml
2024-06-23 02:18:46 (90484): Guest Log: -rwxr-xr-x. 1 atlas atlas    482531 Jun 22 16:55 input.tar.gz
2024-06-23 02:18:46 (90484): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Jun 22 16:55 start_atlas.sh
2024-06-23 02:18:46 (90484): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 22 16:55 EVNT.38776190._000361.pool.root.1 -> /data/./ATLAS.root_0
2024-06-23 02:18:46 (90484): Guest Log: -rw-r--r--. 1 atlas atlas      2651 Jun 22 16:56 pandaJob.out
2024-06-23 02:18:46 (90484): Guest Log: -rw-------. 1 atlas atlas       424 Jun 22 16:56 setup.sh.local
2024-06-23 02:18:46 (90484): Guest Log: -rw-------. 1 atlas atlas   1025930 Jun 22 16:59 agis_schedconf.cvmfs.json
2024-06-23 02:18:46 (90484): Guest Log: -rw-------. 1 atlas atlas   1321363 Jun 22 16:59 cric_ddmendpoints.json
2024-06-23 02:18:46 (90484): Guest Log: drwx------. 4 atlas atlas      4096 Jun 22 16:59 pilot3
2024-06-23 02:18:46 (90484): Guest Log: -rw-------. 1 atlas atlas 357507367 Jun 23 00:16 HITS.38921001._062772.pool.root.1
2024-06-23 02:18:46 (90484): Guest Log: -rw-------. 1 atlas atlas      1033 Jun 23 00:17 memory_monitor_summary.json
2024-06-23 02:18:46 (90484): Guest Log: -rw-------. 1 atlas atlas         0 Jun 23 00:17 agis_ddmendpoints.agis.ALL.json
2024-06-23 02:18:46 (90484): Guest Log: -rw-------. 1 atlas atlas    486894 Jun 23 00:17 log.38921001._062772.job.log.tgz.1
2024-06-23 02:18:46 (90484): Guest Log: -rw-------. 1 atlas atlas        95 Jun 23 00:17 pilot_heartbeat.json
2024-06-23 02:18:46 (90484): Guest Log: -rw-------. 1 atlas atlas      7747 Jun 23 00:18 heartbeat.json
2024-06-23 02:18:46 (90484): Guest Log: -rw-------. 1 atlas atlas      4271 Jun 23 00:18 pilotlog.txt
2024-06-23 02:18:46 (90484): Guest Log: -rw-------. 1 atlas atlas   2348839 Jun 23 00:18 log.38921001._062772.job.log.1
2024-06-23 02:18:46 (90484): Guest Log: -rw-------. 1 atlas atlas       357 Jun 23 00:18 output.list
2024-06-23 02:18:46 (90484): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 23 00:18 runtime_log
2024-06-23 02:18:46 (90484): Guest Log: -rw-------. 1 atlas atlas   2856960 Jun 23 00:18 result.tar.gz
2024-06-23 02:18:46 (90484): Guest Log: -rw-r--r--. 1 atlas atlas     10931 Jun 23 00:18 runtime_log.err
2024-06-23 02:18:46 (90484): Guest Log: -rw-------. 1 atlas atlas       649 Jun 23 00:18 qA3LDmroIe5n9Rq4apOajLDm4fhM0noT9bVo2ijZDmK0WKDms0Gaxn.diag
2024-06-23 02:18:46 (90484): Guest Log: Looking for outputfile HITS.38921001._062772.pool.root.1
2024-06-23 02:18:46 (90484): Guest Log: HITS file was successfully produced
2024-06-23 02:18:46 (90484): Guest Log: -rw-------. 1 atlas atlas 357507367 Jun 23 00:16 /home/atlas/RunAtlas/HITS.38921001._062772.pool.root.1
2024-06-23 02:18:49 (90484): Guest Log: Successfully finished the ATLAS job!
2024-06-23 02:18:49 (90484): Guest Log: Copying the results back to the shared directory!
2024-06-23 02:18:49 (90484): Guest Log:  *** Contents of shared directory: ***
2024-06-23 02:18:49 (90484): Guest Log: total 955436
2024-06-23 02:18:49 (90484): Guest Log: -rwxrwxrwx. 1 root root 617477057 Jun 22 16:54 ATLAS.root_0
2024-06-23 02:18:49 (90484): Guest Log: -rwxrwxrwx. 1 root root 357507367 Jun 23 00:18 HITS.pool.root.1
2024-06-23 02:18:49 (90484): Guest Log: -rwxrwxrwx. 1 root root      9142 Jun 22 16:54 init_data.xml
2024-06-23 02:18:49 (90484): Guest Log: -rwxrwxrwx. 1 root root    482531 Jun 20 05:30 input.tar.gz
2024-06-23 02:18:49 (90484): Guest Log: -rwxrwxrwx. 1 root root   2856960 Jun 23 00:18 result.tar.gz
2024-06-23 02:18:49 (90484): Guest Log: -rwxrwxrwx. 1 root root     17537 Jun 20 05:30 start_atlas.sh
2024-06-23 02:18:49 (90484): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-23 02:18:50 (90484): VM Completion File Detected.
2024-06-23 02:18:50 (90484): Powering off VM.
2024-06-23 02:18:52 (90484): Successfully stopped VM.
2024-06-23 02:18:52 (90484): Deregistering VM. (boinc_6fcaf0768c78f6bc, slot#6)
2024-06-23 02:18:52 (90484): Removing network bandwidth throttle group from VM.
2024-06-23 02:18:52 (90484): Removing VM from VirtualBox.
02:18:57 (90484): called boinc_finish(0)

</stderr_txt>
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