Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-22 11:11:26 (101772): Detected: vboxwrapper 26206
2024-06-22 11:11:26 (101772): Detected: BOINC client v7.24.1
2024-06-22 11:11:26 (101772): Detected: VirtualBox VboxManage Interface (Version: 6.1.34)
2024-06-22 11:11:26 (101772): Successfully copied 'init_data.xml' to the shared directory.
2024-06-22 11:11:27 (101772): Create VM. (boinc_31d2209331b03d8a, slot#7)
2024-06-22 11:11:28 (101772): Setting Memory Size for VM. (4800MB)
2024-06-22 11:11:28 (101772): Setting CPU Count for VM. (8)
2024-06-22 11:11:28 (101772): Setting Chipset Options for VM.
2024-06-22 11:11:28 (101772): Setting Graphics Controller Options for VM.
2024-06-22 11:11:29 (101772): Setting Boot Options for VM.
2024-06-22 11:11:29 (101772): Setting Network Configuration for NAT.
2024-06-22 11:11:29 (101772): Enabling VM Network Access.
2024-06-22 11:11:29 (101772): Disabling USB Support for VM.
2024-06-22 11:11:30 (101772): Disabling COM Port Support for VM.
2024-06-22 11:11:30 (101772): Disabling LPT Port Support for VM.
2024-06-22 11:11:30 (101772): Disabling Audio Support for VM.
2024-06-22 11:11:30 (101772): Disabling Clipboard Support for VM.
2024-06-22 11:11:31 (101772): Disabling Drag and Drop Support for VM.
2024-06-22 11:11:31 (101772): Adding storage controller(s) to VM.
2024-06-22 11:11:31 (101772): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-22 11:11:32 (101772): Adding VirtualBox Guest Additions to VM.
2024-06-22 11:11:32 (101772): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-22 11:11:32 (101772): forwarding host port 50733 to guest port 80
2024-06-22 11:11:32 (101772): Enabling remote desktop for VM.
2024-06-22 11:11:33 (101772): Required extension pack not installed, remote desktop not enabled.
2024-06-22 11:11:33 (101772): Enabling shared directory for VM.
2024-06-22 11:11:33 (101772): Starting VM using VBoxManage interface. (boinc_31d2209331b03d8a, slot#7)
2024-06-22 11:11:39 (101772): Successfully started VM. (PID = '98444')
2024-06-22 11:11:39 (101772): Reporting VM Process ID to BOINC.
2024-06-22 11:11:39 (101772): Guest Log: BIOS: VirtualBox 6.1.34
2024-06-22 11:11:39 (101772): Guest Log: CPUID EDX: 0x178bfbff
2024-06-22 11:11:39 (101772): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-22 11:11:39 (101772): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-22 11:11:39 (101772): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-22 11:11:39 (101772): Detected: Web Application Enabled (http://localhost:50733)
2024-06-22 11:11:39 (101772): Preference change detected
2024-06-22 11:11:39 (101772): Setting CPU throttle for VM. (100%)
2024-06-22 11:11:40 (101772): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-22 11:11:41 (101772): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-22 11:11:41 (101772): Guest Log: BIOS: Booting from Hard Disk...
2024-06-22 11:11:44 (101772): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-22 11:11:44 (101772): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-22 11:11:44 (101772): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-22 11:11:44 (101772): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-22 11:11:44 (101772): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-22 11:11:44 (101772): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-22 11:11:44 (101772): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-22 11:11:44 (101772): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-22 11:11:44 (101772): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-22 11:11:44 (101772): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-22 11:11:44 (101772): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-22 11:11:44 (101772): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-22 11:11:44 (101772): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-22 11:11:44 (101772): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-22 11:11:44 (101772): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-22 11:11:44 (101772): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-22 11:11:44 (101772): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-22 11:11:44 (101772): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-22 11:11:44 (101772): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-22 11:11:44 (101772): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-22 11:11:44 (101772): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-22 11:11:44 (101772): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-22 11:11:44 (101772): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-22 11:11:44 (101772): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-22 11:11:44 (101772): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-22 11:11:44 (101772): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-22 11:11:44 (101772): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-22 11:11:44 (101772): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-22 11:11:44 (101772): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-22 11:11:44 (101772): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-22 11:11:44 (101772): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-22 11:11:44 (101772): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-22 11:11:55 (101772): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-22 11:11:55 (101772): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-22 11:12:10 (101772): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-22 11:12:10 (101772): Guest Log: 00:00:00.000287 main     Log opened 2024-06-22T11:12:08.329451000Z
2024-06-22 11:12:10 (101772): Guest Log: 00:00:00.000448 main     OS Product: Linux
2024-06-22 11:12:10 (101772): Guest Log: 00:00:00.000508 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-22 11:12:10 (101772): Guest Log: 00:00:00.000558 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-22 11:12:10 (101772): Guest Log: 00:00:00.000608 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-22 11:12:10 (101772): Guest Log: 00:00:00.000610 main     Process ID: 1388
2024-06-22 11:12:10 (101772): Guest Log: 00:00:00.000611 main     Package type: LINUX_64BITS_GENERIC
2024-06-22 11:12:10 (101772): Guest Log: 00:00:00.002383 main     5.2.32 r132073 started. Verbose level = 0
2024-06-22 11:12:10 (101772): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-22 11:12:10 (101772): Guest Log: [INFO] Mounting shared directory
2024-06-22 11:12:10 (101772): Guest Log: [INFO] Checking for init_data.xml
2024-06-22 11:12:20 (101772): Guest Log: 00:00:10.018693 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 299 317 000ns (GuestNow=1 719 047 540 034 228 000 ns GuestLast=1 719 054 728 333 545 000 ns fSetTimeLastLoop=true )
2024-06-22 11:12:37 (101772): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-22 11:12:37 (101772): Guest Log: [INFO] Detected branch: prod
2024-06-22 11:12:37 (101772): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-22 11:12:37 (101772): Guest Log: Copying input files
2024-06-22 11:12:44 (101772): Guest Log: Copied input files into RunAtlas.
2024-06-22 11:12:44 (101772): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-06-22 11:12:44 (101772): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-06-22 11:12:44 (101772): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-06-22 11:12:44 (101772): Guest Log: Further information can be found at the LHC@home message board.
2024-06-22 11:13:53 (101772): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-22 11:13:54 (101772): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-22 11:13:54 (101772): Guest Log: 2.6.3.0 1669 1 32192 134160 4 1 3117206 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-06-22 11:13:56 (101772): Guest Log: copied the webapp to /var/www
2024-06-22 11:13:56 (101772): Guest Log: ATHENA_PROC_NUMBER=8
2024-06-22 11:13:56 (101772): Guest Log: ATHENA_CORE_NUMBER=8
2024-06-22 11:13:57 (101772): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-22 11:13:57 (101772): Guest Log:  *** Starting ATLAS job. (PandaID=6238402252 taskID=38921013) ***
2024-06-22 12:51:44 (101772): Status Report: Elapsed Time: '6000.000000'
2024-06-22 12:51:44 (101772): Status Report: CPU Time: '36785.921875'
2024-06-22 14:31:56 (101772): Status Report: Elapsed Time: '12000.000000'
2024-06-22 14:31:56 (101772): Status Report: CPU Time: '84344.984375'
2024-06-22 16:12:01 (101772): Status Report: Elapsed Time: '18000.000000'
2024-06-22 16:12:01 (101772): Status Report: CPU Time: '131934.062500'
2024-06-22 17:52:05 (101772): Status Report: Elapsed Time: '24000.000000'
2024-06-22 17:52:05 (101772): Status Report: CPU Time: '179491.984375'
2024-06-22 19:32:10 (101772): Status Report: Elapsed Time: '30000.000000'
2024-06-22 19:32:10 (101772): Status Report: CPU Time: '227055.531250'
2024-06-22 20:02:51 (101772): Guest Log:  *** Job finished ***
2024-06-22 20:02:51 (101772): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-22 20:02:51 (101772): Guest Log: 2024-06-22 18:02:39,487 | INFO     | [payload] failed_post thread has finished
2024-06-22 20:02:51 (101772): Guest Log: 2024-06-22 18:02:39,716 | INFO     | [job] queue monitor thread has finished
2024-06-22 20:02:51 (101772): Guest Log: 2024-06-22 18:02:42,353 | INFO     | [data] queue_monitor thread has finished
2024-06-22 20:02:51 (101772): Guest Log: 2024-06-22 18:02:43,084 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140262400239424)>', '<ExcThread(monitor, started 140261745223424)>']
2024-06-22 20:02:51 (101772): Guest Log: 2024-06-22 18:02:43,275 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-22 20:02:51 (101772): Guest Log: 2024-06-22 18:02:43,276 | INFO     | [monitor] control thread has ended
2024-06-22 20:02:51 (101772): Guest Log: 2024-06-22 18:02:48,086 | INFO     | all workflow threads have been joined
2024-06-22 20:02:51 (101772): Guest Log: 2024-06-22 18:02:48,086 | INFO     | end of generic workflow (traces error code: 0)
2024-06-22 20:02:51 (101772): Guest Log: 2024-06-22 18:02:48,087 | INFO     | traces error code: 0
2024-06-22 20:02:51 (101772): Guest Log: 2024-06-22 18:02:48,087 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-22 20:02:51 (101772): Guest Log: 2024-06-22 18:02:48,212 [wrapper] ==== pilot stdout END ====
2024-06-22 20:02:51 (101772): Guest Log: 2024-06-22 18:02:48,220 [wrapper] ==== wrapper stdout RESUME ====
2024-06-22 20:02:51 (101772): Guest Log: 2024-06-22 18:02:48,228 [wrapper] pilotpid: 6608
2024-06-22 20:02:51 (101772): Guest Log: 2024-06-22 18:02:48,236 [wrapper] Pilot exit status: 0
2024-06-22 20:02:51 (101772): Guest Log: 2024-06-22 18:02:48,315 [wrapper] pandaids: 6238402252
2024-06-22 20:02:51 (101772): Guest Log: 2024-06-22 18:02:48,361 [wrapper] cleanup supervisor_pilot  9145 6609
2024-06-22 20:02:51 (101772): Guest Log: 2024-06-22 18:02:48,368 [wrapper] Test setup, not cleaning
2024-06-22 20:02:51 (101772): Guest Log: 2024-06-22 18:02:48,375 [wrapper] ==== wrapper stdout END ====
2024-06-22 20:02:51 (101772): Guest Log: 2024-06-22 18:02:48,383 [wrapper] ==== wrapper stderr END ====
2024-06-22 20:02:51 (101772): Guest Log: 2024-06-22 18:02:48,398 [wrapper] apfmon messages muted
2024-06-22 20:02:51 (101772): Guest Log:  *** Error codes and diagnostics ***
2024-06-22 20:02:51 (101772): Guest Log:     "exeErrorCode": 0,
2024-06-22 20:02:51 (101772): Guest Log:     "exeErrorDiag": "",
2024-06-22 20:02:51 (101772): Guest Log:     "pilotErrorCode": 0,
2024-06-22 20:02:51 (101772): Guest Log:     "pilotErrorDiag": "",
2024-06-22 20:02:51 (101772): Guest Log:  *** Listing of results directory ***
2024-06-22 20:02:51 (101772): Guest Log: total 346868
2024-06-22 20:02:51 (101772): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 19 22:07 pilot3.tar.gz
2024-06-22 20:02:51 (101772): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 19 22:08 queuedata.json
2024-06-22 20:02:51 (101772): Guest Log: -rwx------. 1 atlas atlas     32308 Jun 19 22:08 runpilot2-wrapper.sh
2024-06-22 20:02:51 (101772): Guest Log: -rwxr-xr-x. 1 atlas atlas      9142 Jun 22 09:12 init_data.xml
2024-06-22 20:02:51 (101772): Guest Log: -rwxr-xr-x. 1 atlas atlas    482536 Jun 22 09:12 input.tar.gz
2024-06-22 20:02:51 (101772): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Jun 22 09:12 start_atlas.sh
2024-06-22 20:02:51 (101772): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 22 09:12 EVNT.38776210._000384.pool.root.1 -> /data/./ATLAS.root_0
2024-06-22 20:02:51 (101772): Guest Log: -rw-r--r--. 1 atlas atlas      2643 Jun 22 09:13 pandaJob.out
2024-06-22 20:02:51 (101772): Guest Log: -rw-------. 1 atlas atlas       424 Jun 22 09:14 setup.sh.local
2024-06-22 20:02:51 (101772): Guest Log: -rw-------. 1 atlas atlas   1025969 Jun 22 09:15 agis_schedconf.cvmfs.json
2024-06-22 20:02:51 (101772): Guest Log: -rw-------. 1 atlas atlas   1321363 Jun 22 09:15 cric_ddmendpoints.json
2024-06-22 20:02:51 (101772): Guest Log: drwx------. 4 atlas atlas      4096 Jun 22 09:15 pilot3
2024-06-22 20:02:51 (101772): Guest Log: -rw-------. 1 atlas atlas 344948280 Jun 22 18:01 HITS.38921013._049574.pool.root.1
2024-06-22 20:02:51 (101772): Guest Log: -rw-------. 1 atlas atlas        95 Jun 22 18:02 pilot_heartbeat.json
2024-06-22 20:02:51 (101772): Guest Log: -rw-------. 1 atlas atlas      1031 Jun 22 18:02 memory_monitor_summary.json
2024-06-22 20:02:51 (101772): Guest Log: -rw-------. 1 atlas atlas         0 Jun 22 18:02 agis_ddmendpoints.agis.ALL.json
2024-06-22 20:02:51 (101772): Guest Log: -rw-------. 1 atlas atlas    524129 Jun 22 18:02 log.38921013._049574.job.log.tgz.1
2024-06-22 20:02:51 (101772): Guest Log: -rw-------. 1 atlas atlas      7747 Jun 22 18:02 heartbeat.json
2024-06-22 20:02:51 (101772): Guest Log: -rw-------. 1 atlas atlas      4271 Jun 22 18:02 pilotlog.txt
2024-06-22 20:02:51 (101772): Guest Log: -rw-------. 1 atlas atlas   2862917 Jun 22 18:02 log.38921013._049574.job.log.1
2024-06-22 20:02:51 (101772): Guest Log: -rw-------. 1 atlas atlas       357 Jun 22 18:02 output.list
2024-06-22 20:02:51 (101772): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 22 18:02 runtime_log
2024-06-22 20:02:51 (101772): Guest Log: -rw-------. 1 atlas atlas   3409920 Jun 22 18:02 result.tar.gz
2024-06-22 20:02:51 (101772): Guest Log: -rw-------. 1 atlas atlas       649 Jun 22 18:02 YtzKDmmeIe5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmzWkKDmPHwl8n.diag
2024-06-22 20:02:51 (101772): Guest Log: -rw-r--r--. 1 atlas atlas     10931 Jun 22 18:02 runtime_log.err
2024-06-22 20:02:51 (101772): Guest Log: Looking for outputfile HITS.38921013._049574.pool.root.1
2024-06-22 20:02:51 (101772): Guest Log: HITS file was successfully produced
2024-06-22 20:02:51 (101772): Guest Log: -rw-------. 1 atlas atlas 344948280 Jun 22 18:01 /home/atlas/RunAtlas/HITS.38921013._049574.pool.root.1
2024-06-22 20:02:53 (101772): Guest Log: Successfully finished the ATLAS job!
2024-06-22 20:02:53 (101772): Guest Log: Copying the results back to the shared directory!
2024-06-22 20:02:53 (101772): Guest Log:  *** Contents of shared directory: ***
2024-06-22 20:02:53 (101772): Guest Log: total 868468
2024-06-22 20:02:53 (101772): Guest Log: -rwxrwxrwx. 1 root root 540431790 Jun 22 09:11 ATLAS.root_0
2024-06-22 20:02:53 (101772): Guest Log: -rwxrwxrwx. 1 root root 344948280 Jun 22 18:02 HITS.pool.root.1
2024-06-22 20:02:53 (101772): Guest Log: -rwxrwxrwx. 1 root root      9142 Jun 22 09:11 init_data.xml
2024-06-22 20:02:53 (101772): Guest Log: -rwxrwxrwx. 1 root root    482536 Jun 20 05:29 input.tar.gz
2024-06-22 20:02:53 (101772): Guest Log: -rwxrwxrwx. 1 root root   3409920 Jun 22 18:02 result.tar.gz
2024-06-22 20:02:53 (101772): Guest Log: -rwxrwxrwx. 1 root root     17537 Jun 20 05:29 start_atlas.sh
2024-06-22 20:02:53 (101772): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-22 20:02:53 (101772): VM Completion File Detected.
2024-06-22 20:02:53 (101772): Powering off VM.
2024-06-22 20:02:55 (101772): Successfully stopped VM.
2024-06-22 20:02:55 (101772): Deregistering VM. (boinc_31d2209331b03d8a, slot#7)
2024-06-22 20:02:55 (101772): Removing network bandwidth throttle group from VM.
2024-06-22 20:02:55 (101772): Removing VM from VirtualBox.
20:03:01 (101772): called boinc_finish(0)

</stderr_txt>
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