Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-23 10:02:38 (96412): Detected: vboxwrapper 26206
2024-06-23 10:02:38 (96412): Detected: BOINC client v7.24.1
2024-06-23 10:02:39 (96412): Detected: VirtualBox VboxManage Interface (Version: 6.1.34)
2024-06-23 10:02:39 (96412): Successfully copied 'init_data.xml' to the shared directory.
2024-06-23 10:02:39 (96412): Create VM. (boinc_c342f8820bc64c01, slot#7)
2024-06-23 10:02:40 (96412): Setting Memory Size for VM. (4800MB)
2024-06-23 10:02:40 (96412): Setting CPU Count for VM. (8)
2024-06-23 10:02:40 (96412): Setting Chipset Options for VM.
2024-06-23 10:02:41 (96412): Setting Graphics Controller Options for VM.
2024-06-23 10:02:41 (96412): Setting Boot Options for VM.
2024-06-23 10:02:41 (96412): Setting Network Configuration for NAT.
2024-06-23 10:02:41 (96412): Enabling VM Network Access.
2024-06-23 10:02:42 (96412): Disabling USB Support for VM.
2024-06-23 10:02:42 (96412): Disabling COM Port Support for VM.
2024-06-23 10:02:42 (96412): Disabling LPT Port Support for VM.
2024-06-23 10:02:42 (96412): Disabling Audio Support for VM.
2024-06-23 10:02:43 (96412): Disabling Clipboard Support for VM.
2024-06-23 10:02:43 (96412): Disabling Drag and Drop Support for VM.
2024-06-23 10:02:44 (96412): Adding storage controller(s) to VM.
2024-06-23 10:02:44 (96412): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-23 10:02:45 (96412): Adding VirtualBox Guest Additions to VM.
2024-06-23 10:02:45 (96412): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-23 10:02:45 (96412): forwarding host port 49259 to guest port 80
2024-06-23 10:02:45 (96412): Enabling remote desktop for VM.
2024-06-23 10:02:46 (96412): Required extension pack not installed, remote desktop not enabled.
2024-06-23 10:02:46 (96412): Enabling shared directory for VM.
2024-06-23 10:02:46 (96412): Starting VM using VBoxManage interface. (boinc_c342f8820bc64c01, slot#7)
2024-06-23 10:02:52 (96412): Successfully started VM. (PID = '100452')
2024-06-23 10:02:52 (96412): Reporting VM Process ID to BOINC.
2024-06-23 10:02:52 (96412): Guest Log: BIOS: VirtualBox 6.1.34
2024-06-23 10:02:52 (96412): Guest Log: CPUID EDX: 0x178bfbff
2024-06-23 10:02:52 (96412): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-23 10:02:52 (96412): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-23 10:02:52 (96412): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-23 10:02:52 (96412): Detected: Web Application Enabled (http://localhost:49259)
2024-06-23 10:02:52 (96412): Preference change detected
2024-06-23 10:02:52 (96412): Setting CPU throttle for VM. (100%)
2024-06-23 10:02:53 (96412): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-23 10:02:54 (96412): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-23 10:02:54 (96412): Guest Log: BIOS: Booting from Hard Disk...
2024-06-23 10:02:57 (96412): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-23 10:02:57 (96412): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-23 10:02:57 (96412): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-23 10:02:57 (96412): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-23 10:02:57 (96412): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-23 10:02:57 (96412): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-23 10:02:57 (96412): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-23 10:02:57 (96412): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-23 10:02:57 (96412): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-23 10:02:57 (96412): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-23 10:02:57 (96412): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-23 10:02:57 (96412): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-23 10:02:57 (96412): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-23 10:02:57 (96412): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-23 10:02:57 (96412): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-23 10:02:57 (96412): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-23 10:02:57 (96412): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-23 10:02:57 (96412): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-23 10:02:57 (96412): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-23 10:02:57 (96412): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-23 10:02:57 (96412): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-23 10:02:57 (96412): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-23 10:02:57 (96412): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-23 10:02:57 (96412): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-23 10:02:57 (96412): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-23 10:02:57 (96412): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-23 10:02:57 (96412): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-23 10:02:58 (96412): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-23 10:02:58 (96412): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-23 10:02:58 (96412): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-23 10:02:58 (96412): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-23 10:02:58 (96412): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-23 10:03:07 (96412): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-23 10:03:07 (96412): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-23 10:03:21 (96412): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-23 10:03:21 (96412): Guest Log: 00:00:00.000257 main     Log opened 2024-06-23T10:03:19.972458000Z
2024-06-23 10:03:21 (96412): Guest Log: 00:00:00.000405 main     OS Product: Linux
2024-06-23 10:03:21 (96412): Guest Log: 00:00:00.000467 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-23 10:03:21 (96412): Guest Log: 00:00:00.000513 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-23 10:03:21 (96412): Guest Log: 00:00:00.000553 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-23 10:03:21 (96412): Guest Log: 00:00:00.000554 main     Process ID: 1372
2024-06-23 10:03:21 (96412): Guest Log: 00:00:00.000555 main     Package type: LINUX_64BITS_GENERIC
2024-06-23 10:03:21 (96412): Guest Log: 00:00:00.001887 main     5.2.32 r132073 started. Verbose level = 0
2024-06-23 10:03:22 (96412): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-23 10:03:22 (96412): Guest Log: [INFO] Mounting shared directory
2024-06-23 10:03:22 (96412): Guest Log: [INFO] Checking for init_data.xml
2024-06-23 10:03:32 (96412): Guest Log: 00:00:10.019475 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 190 002 000ns (GuestNow=1 719 129 811 786 284 000 ns GuestLast=1 719 136 999 976 286 000 ns fSetTimeLastLoop=true )
2024-06-23 10:04:12 (96412): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-23 10:04:12 (96412): Guest Log: [INFO] Detected branch: prod
2024-06-23 10:04:12 (96412): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-23 10:04:12 (96412): Guest Log: Copying input files
2024-06-23 10:04:20 (96412): Guest Log: Copied input files into RunAtlas.
2024-06-23 10:04:20 (96412): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-06-23 10:04:20 (96412): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-06-23 10:04:20 (96412): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-06-23 10:04:20 (96412): Guest Log: Further information can be found at the LHC@home message board.
2024-06-23 10:04:54 (96412): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-23 10:04:55 (96412): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-23 10:04:55 (96412): Guest Log: 2.6.3.0 1670 0 32036 134194 3 1 3117206 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-06-23 10:04:58 (96412): Guest Log: copied the webapp to /var/www
2024-06-23 10:04:58 (96412): Guest Log: ATHENA_PROC_NUMBER=8
2024-06-23 10:04:58 (96412): Guest Log: ATHENA_CORE_NUMBER=8
2024-06-23 10:04:58 (96412): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-23 10:04:58 (96412): Guest Log:  *** Starting ATLAS job. (PandaID=6238380406 taskID=38921007) ***
2024-06-23 11:29:34 (96412): Preference change detected
2024-06-23 11:29:34 (96412): Setting CPU throttle for VM. (100%)
2024-06-23 11:29:34 (96412): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-23 11:30:21 (96412): Preference change detected
2024-06-23 11:30:21 (96412): Setting CPU throttle for VM. (100%)
2024-06-23 11:30:21 (96412): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-23 11:32:02 (96412): Preference change detected
2024-06-23 11:32:02 (96412): Setting CPU throttle for VM. (100%)
2024-06-23 11:32:02 (96412): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-23 11:42:57 (96412): Status Report: Elapsed Time: '6000.286489'
2024-06-23 11:42:57 (96412): Status Report: CPU Time: '37723.859375'
2024-06-23 13:23:02 (96412): Status Report: Elapsed Time: '12000.286489'
2024-06-23 13:23:02 (96412): Status Report: CPU Time: '85366.937500'
2024-06-23 15:03:06 (96412): Status Report: Elapsed Time: '18000.286489'
2024-06-23 15:03:06 (96412): Status Report: CPU Time: '133021.187500'
2024-06-23 16:43:10 (96412): Status Report: Elapsed Time: '24000.286489'
2024-06-23 16:43:10 (96412): Status Report: CPU Time: '180700.390625'
2024-06-23 17:35:07 (96412): Guest Log:  *** Job finished ***
2024-06-23 17:35:07 (96412): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-23 17:35:07 (96412): Guest Log: 2024-06-23 15:34:55,879 | INFO     | [job] queue monitor thread has finished
2024-06-23 17:35:07 (96412): Guest Log: 2024-06-23 15:34:56,172 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2024-06-23 17:35:07 (96412): Guest Log: 2024-06-23 15:35:00,248 | INFO     | [data] queue_monitor thread has finished
2024-06-23 17:35:07 (96412): Guest Log: 2024-06-23 15:35:01,453 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139669732128576)>', '<ExcThread(monitor, started 139668762908416)>']
2024-06-23 17:35:07 (96412): Guest Log: 2024-06-23 15:35:02,253 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-23 17:35:07 (96412): Guest Log: 2024-06-23 15:35:02,254 | INFO     | [monitor] control thread has ended
2024-06-23 17:35:07 (96412): Guest Log: 2024-06-23 15:35:06,457 | INFO     | all workflow threads have been joined
2024-06-23 17:35:07 (96412): Guest Log: 2024-06-23 15:35:06,457 | INFO     | end of generic workflow (traces error code: 0)
2024-06-23 17:35:07 (96412): Guest Log: 2024-06-23 15:35:06,457 | INFO     | traces error code: 0
2024-06-23 17:35:07 (96412): Guest Log: 2024-06-23 15:35:06,457 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-23 17:35:07 (96412): Guest Log: 2024-06-23 15:35:06,637 [wrapper] ==== pilot stdout END ====
2024-06-23 17:35:07 (96412): Guest Log: 2024-06-23 15:35:06,646 [wrapper] ==== wrapper stdout RESUME ====
2024-06-23 17:35:07 (96412): Guest Log: 2024-06-23 15:35:06,654 [wrapper] pilotpid: 6587
2024-06-23 17:35:07 (96412): Guest Log: 2024-06-23 15:35:06,663 [wrapper] Pilot exit status: 0
2024-06-23 17:35:07 (96412): Guest Log: 2024-06-23 15:35:06,756 [wrapper] pandaids: 6238380406
2024-06-23 17:35:07 (96412): Guest Log: 2024-06-23 15:35:06,811 [wrapper] cleanup supervisor_pilot  2156 6588
2024-06-23 17:35:07 (96412): Guest Log: 2024-06-23 15:35:06,826 [wrapper] Test setup, not cleaning
2024-06-23 17:35:07 (96412): Guest Log: 2024-06-23 15:35:06,834 [wrapper] ==== wrapper stdout END ====
2024-06-23 17:35:07 (96412): Guest Log: 2024-06-23 15:35:06,842 [wrapper] ==== wrapper stderr END ====
2024-06-23 17:35:07 (96412): Guest Log: 2024-06-23 15:35:06,858 [wrapper] apfmon messages muted
2024-06-23 17:35:07 (96412): Guest Log:  *** Error codes and diagnostics ***
2024-06-23 17:35:07 (96412): Guest Log:     "exeErrorCode": 0,
2024-06-23 17:35:07 (96412): Guest Log:     "exeErrorDiag": "",
2024-06-23 17:35:07 (96412): Guest Log:     "pilotErrorCode": 0,
2024-06-23 17:35:07 (96412): Guest Log:     "pilotErrorDiag": "",
2024-06-23 17:35:07 (96412): Guest Log:  *** Listing of results directory ***
2024-06-23 17:35:07 (96412): Guest Log: total 351980
2024-06-23 17:35:07 (96412): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 19 21:13 pilot3.tar.gz
2024-06-23 17:35:07 (96412): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 19 21:41 queuedata.json
2024-06-23 17:35:07 (96412): Guest Log: -rwx------. 1 atlas atlas     32308 Jun 19 21:43 runpilot2-wrapper.sh
2024-06-23 17:35:07 (96412): Guest Log: -rwxr-xr-x. 1 atlas atlas      9142 Jun 23 08:04 init_data.xml
2024-06-23 17:35:07 (96412): Guest Log: -rwxr-xr-x. 1 atlas atlas    482535 Jun 23 08:04 input.tar.gz
2024-06-23 17:35:07 (96412): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Jun 23 08:04 start_atlas.sh
2024-06-23 17:35:07 (96412): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 23 08:04 EVNT.38776201._000703.pool.root.1 -> /data/./ATLAS.root_0
2024-06-23 17:35:07 (96412): Guest Log: -rw-r--r--. 1 atlas atlas      2629 Jun 23 08:04 pandaJob.out
2024-06-23 17:35:07 (96412): Guest Log: -rw-------. 1 atlas atlas       424 Jun 23 08:05 setup.sh.local
2024-06-23 17:35:07 (96412): Guest Log: -rw-------. 1 atlas atlas   1025270 Jun 23 08:05 agis_schedconf.cvmfs.json
2024-06-23 17:35:07 (96412): Guest Log: -rw-------. 1 atlas atlas   1321363 Jun 23 08:05 cric_ddmendpoints.json
2024-06-23 17:35:07 (96412): Guest Log: drwx------. 4 atlas atlas      4096 Jun 23 08:05 pilot3
2024-06-23 17:35:07 (96412): Guest Log: -rw-------. 1 atlas atlas 351384903 Jun 23 15:31 HITS.38921007._050303.pool.root.1
2024-06-23 17:35:07 (96412): Guest Log: -rw-------. 1 atlas atlas      1033 Jun 23 15:32 memory_monitor_summary.json
2024-06-23 17:35:07 (96412): Guest Log: -rw-------. 1 atlas atlas         0 Jun 23 15:32 agis_ddmendpoints.agis.ALL.json
2024-06-23 17:35:07 (96412): Guest Log: -rw-------. 1 atlas atlas    499717 Jun 23 15:32 log.38921007._050303.job.log.tgz.1
2024-06-23 17:35:07 (96412): Guest Log: -rw-------. 1 atlas atlas        95 Jun 23 15:34 pilot_heartbeat.json
2024-06-23 17:35:07 (96412): Guest Log: -rw-------. 1 atlas atlas      7751 Jun 23 15:34 heartbeat.json
2024-06-23 17:35:07 (96412): Guest Log: -rw-------. 1 atlas atlas      4271 Jun 23 15:35 pilotlog.txt
2024-06-23 17:35:07 (96412): Guest Log: -rw-------. 1 atlas atlas   2282870 Jun 23 15:35 log.38921007._050303.job.log.1
2024-06-23 17:35:07 (96412): Guest Log: -rw-------. 1 atlas atlas       357 Jun 23 15:35 output.list
2024-06-23 17:35:07 (96412): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 23 15:35 runtime_log
2024-06-23 17:35:07 (96412): Guest Log: -rw-------. 1 atlas atlas   2805760 Jun 23 15:35 result.tar.gz
2024-06-23 17:35:07 (96412): Guest Log: -rw-r--r--. 1 atlas atlas     10931 Jun 23 15:35 runtime_log.err
2024-06-23 17:35:07 (96412): Guest Log: -rw-------. 1 atlas atlas       649 Jun 23 15:35 exnLDmkGIe5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDm9VkKDmbm3Qnn.diag
2024-06-23 17:35:07 (96412): Guest Log: Looking for outputfile HITS.38921007._050303.pool.root.1
2024-06-23 17:35:07 (96412): Guest Log: HITS file was successfully produced
2024-06-23 17:35:07 (96412): Guest Log: -rw-------. 1 atlas atlas 351384903 Jun 23 15:31 /home/atlas/RunAtlas/HITS.38921007._050303.pool.root.1
2024-06-23 17:35:10 (96412): Guest Log: Successfully finished the ATLAS job!
2024-06-23 17:35:10 (96412): Guest Log: Copying the results back to the shared directory!
2024-06-23 17:35:10 (96412): Guest Log:  *** Contents of shared directory: ***
2024-06-23 17:35:10 (96412): Guest Log: total 918196
2024-06-23 17:35:10 (96412): Guest Log: -rwxrwxrwx. 1 root root 585521447 Jun 23 08:02 ATLAS.root_0
2024-06-23 17:35:10 (96412): Guest Log: -rwxrwxrwx. 1 root root 351384903 Jun 23 15:35 HITS.pool.root.1
2024-06-23 17:35:10 (96412): Guest Log: -rwxrwxrwx. 1 root root      9142 Jun 23 08:02 init_data.xml
2024-06-23 17:35:10 (96412): Guest Log: -rwxrwxrwx. 1 root root    482535 Jun 20 05:27 input.tar.gz
2024-06-23 17:35:10 (96412): Guest Log: -rwxrwxrwx. 1 root root   2805760 Jun 23 15:35 result.tar.gz
2024-06-23 17:35:10 (96412): Guest Log: -rwxrwxrwx. 1 root root     17537 Jun 20 05:27 start_atlas.sh
2024-06-23 17:35:10 (96412): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-23 17:35:10 (96412): VM Completion File Detected.
2024-06-23 17:35:10 (96412): Powering off VM.
2024-06-23 17:35:12 (96412): Successfully stopped VM.
2024-06-23 17:35:12 (96412): Deregistering VM. (boinc_c342f8820bc64c01, slot#7)
2024-06-23 17:35:12 (96412): Removing network bandwidth throttle group from VM.
2024-06-23 17:35:13 (96412): Removing VM from VirtualBox.
17:35:18 (96412): called boinc_finish(0)

</stderr_txt>
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