Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-20 21:47:39 (843411): Detected: vboxwrapper 26206
2024-06-20 21:47:39 (843411): Detected: BOINC client v7.24.1
2024-06-20 21:47:39 (843411): Detected: VirtualBox VboxManage Interface (Version: 7.0.18)
2024-06-20 21:47:39 (843411): Successfully copied 'init_data.xml' to the shared directory.
2024-06-20 21:47:39 (843411): Create VM. (boinc_efd922eff69d4bdd, slot#0)
2024-06-20 21:47:39 (843411): Setting Memory Size for VM. (4400MB)
2024-06-20 21:47:40 (843411): Setting CPU Count for VM. (4)
2024-06-20 21:47:40 (843411): Setting Chipset Options for VM.
2024-06-20 21:47:40 (843411): Setting Graphics Controller Options for VM.
2024-06-20 21:47:40 (843411): Setting Boot Options for VM.
2024-06-20 21:47:40 (843411): Setting Network Configuration for NAT.
2024-06-20 21:47:40 (843411): Enabling VM Network Access.
2024-06-20 21:47:40 (843411): Disabling USB Support for VM.
2024-06-20 21:47:40 (843411): Disabling COM Port Support for VM.
2024-06-20 21:47:40 (843411): Disabling LPT Port Support for VM.
2024-06-20 21:47:41 (843411): Disabling Audio Support for VM.
2024-06-20 21:47:41 (843411): Disabling Clipboard Support for VM.
2024-06-20 21:47:41 (843411): Disabling Drag and Drop Support for VM.
2024-06-20 21:47:41 (843411): Adding storage controller(s) to VM.
2024-06-20 21:47:41 (843411): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-20 21:47:43 (843411): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-20 21:47:43 (843411): forwarding host port 42313 to guest port 80
2024-06-20 21:47:43 (843411): Enabling remote desktop for VM.
2024-06-20 21:47:43 (843411): Required extension pack not installed, remote desktop not enabled.
2024-06-20 21:47:43 (843411): Enabling shared directory for VM.
2024-06-20 21:47:43 (843411): Starting VM using VBoxManage interface. (boinc_efd922eff69d4bdd, slot#0)
2024-06-20 21:47:44 (843411): Successfully started VM. (PID = '843671')
2024-06-20 21:47:44 (843411): Reporting VM Process ID to BOINC.
2024-06-20 21:47:44 (843411): Guest Log: BIOS: VirtualBox 7.0.18
2024-06-20 21:47:44 (843411): Guest Log: CPUID EDX: 0x178bfbff
2024-06-20 21:47:44 (843411): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-20 21:47:44 (843411): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-20 21:47:44 (843411): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-20 21:47:44 (843411): Detected: Web Application Enabled (http://localhost:42313)
2024-06-20 21:47:44 (843411): Preference change detected
2024-06-20 21:47:44 (843411): Setting CPU throttle for VM. (50%)
2024-06-20 21:47:44 (843411): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-20 21:47:46 (843411): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-20 21:47:46 (843411): Guest Log: BIOS: Booting from Hard Disk...
2024-06-20 21:47:52 (843411): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-20 21:47:52 (843411): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-20 21:47:52 (843411): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-20 21:47:52 (843411): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-20 21:47:52 (843411): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-20 21:47:52 (843411): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-20 21:47:52 (843411): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-20 21:47:52 (843411): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-20 21:47:52 (843411): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-20 21:47:52 (843411): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-20 21:47:52 (843411): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-20 21:47:52 (843411): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-20 21:47:52 (843411): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-20 21:47:52 (843411): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-20 21:47:52 (843411): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-20 21:47:52 (843411): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-20 21:47:52 (843411): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-20 21:47:52 (843411): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-20 21:47:52 (843411): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-20 21:47:52 (843411): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-20 21:47:52 (843411): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-20 21:47:52 (843411): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-20 21:47:52 (843411): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-20 21:47:52 (843411): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-20 21:47:52 (843411): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-20 21:47:52 (843411): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-20 21:47:52 (843411): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-20 21:47:52 (843411): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-20 21:47:52 (843411): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-20 21:47:52 (843411): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-20 21:47:52 (843411): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-20 21:47:52 (843411): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-20 21:48:04 (843411): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-20 21:48:04 (843411): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-20 21:48:24 (843411): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-20 21:48:24 (843411): Guest Log: 00:00:00.000368 main     Log opened 2024-06-20T19:48:21.616345000Z
2024-06-20 21:48:24 (843411): Guest Log: 00:00:00.000591 main     OS Product: Linux
2024-06-20 21:48:24 (843411): Guest Log: 00:00:00.000662 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-20 21:48:24 (843411): Guest Log: 00:00:00.000717 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-20 21:48:24 (843411): Guest Log: 00:00:00.000769 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-20 21:48:24 (843411): Guest Log: 00:00:00.000771 main     Process ID: 1298
2024-06-20 21:48:24 (843411): Guest Log: 00:00:00.000772 main     Package type: LINUX_64BITS_GENERIC
2024-06-20 21:48:24 (843411): Guest Log: 00:00:00.003877 main     5.2.32 r132073 started. Verbose level = 0
2024-06-20 21:48:24 (843411): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-20 21:48:24 (843411): Guest Log: [INFO] Mounting shared directory
2024-06-20 21:48:24 (843411): Guest Log: [INFO] Checking for init_data.xml
2024-06-20 21:48:30 (843411): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-20 21:48:30 (843411): Guest Log: [INFO] Detected branch: prod
2024-06-20 21:48:31 (843411): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-20 21:48:31 (843411): Guest Log: Copying input files
2024-06-20 21:48:39 (843411): Guest Log: Copied input files into RunAtlas.
2024-06-20 21:48:39 (843411): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-06-20 21:48:39 (843411): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-06-20 21:48:39 (843411): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-06-20 21:48:39 (843411): Guest Log: Further information can be found at the LHC@home message board.
2024-06-20 21:49:48 (843411): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-20 21:49:49 (843411): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-20 21:49:49 (843411): Guest Log: 2.6.3.0 1575 1 30256 134100 4 1 3117205 4096000 0 65024 0 0 n/a 1 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2024-06-20 21:49:52 (843411): Guest Log: copied the webapp to /var/www
2024-06-20 21:49:52 (843411): Guest Log: ATHENA_PROC_NUMBER=4
2024-06-20 21:49:52 (843411): Guest Log: ATHENA_CORE_NUMBER=4
2024-06-20 21:49:53 (843411): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-20 21:49:53 (843411): Guest Log:  *** Starting ATLAS job. (PandaID=6238306826 taskID=38921013) ***
2024-06-20 23:26:45 (843411): Status Report: Elapsed Time: '6000.000000'
2024-06-20 23:26:45 (843411): Status Report: CPU Time: '9622.840000'
2024-06-21 01:05:46 (843411): Status Report: Elapsed Time: '12000.000000'
2024-06-21 01:05:46 (843411): Status Report: CPU Time: '21942.240000'
2024-06-21 02:44:46 (843411): Status Report: Elapsed Time: '18000.000000'
2024-06-21 02:44:46 (843411): Status Report: CPU Time: '34245.510000'
2024-06-21 04:23:47 (843411): Status Report: Elapsed Time: '24000.000000'
2024-06-21 04:23:47 (843411): Status Report: CPU Time: '46534.550000'
2024-06-21 06:02:47 (843411): Status Report: Elapsed Time: '30000.000000'
2024-06-21 06:02:47 (843411): Status Report: CPU Time: '58851.970000'
2024-06-21 07:09:00 (843411): Guest Log:  *** Job finished ***
2024-06-21 07:09:00 (843411): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-21 07:09:00 (843411): Guest Log: 2024-06-21 05:08:46,967 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2024-06-21 07:09:00 (843411): Guest Log: 2024-06-21 05:08:47,199 | INFO     | [job] queue monitor thread has finished
2024-06-21 07:09:00 (843411): Guest Log: 2024-06-21 05:08:51,179 | INFO     | [data] queue_monitor thread has finished
2024-06-21 07:09:00 (843411): Guest Log: 2024-06-21 05:08:51,859 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139720714430272)>', '<ExcThread(monitor, started 139719832753920)>']
2024-06-21 07:09:00 (843411): Guest Log: 2024-06-21 05:08:52,852 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-21 07:09:00 (843411): Guest Log: 2024-06-21 05:08:52,852 | INFO     | [monitor] control thread has ended
2024-06-21 07:09:00 (843411): Guest Log: 2024-06-21 05:08:56,868 | INFO     | all workflow threads have been joined
2024-06-21 07:09:00 (843411): Guest Log: 2024-06-21 05:08:56,868 | INFO     | end of generic workflow (traces error code: 0)
2024-06-21 07:09:00 (843411): Guest Log: 2024-06-21 05:08:56,869 | INFO     | traces error code: 0
2024-06-21 07:09:00 (843411): Guest Log: 2024-06-21 05:08:56,869 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-21 07:09:00 (843411): Guest Log: 2024-06-21 05:08:56,996 [wrapper] ==== pilot stdout END ====
2024-06-21 07:09:00 (843411): Guest Log: 2024-06-21 05:08:57,013 [wrapper] ==== wrapper stdout RESUME ====
2024-06-21 07:09:00 (843411): Guest Log: 2024-06-21 05:08:57,031 [wrapper] pilotpid: 6487
2024-06-21 07:09:00 (843411): Guest Log: 2024-06-21 05:08:57,048 [wrapper] Pilot exit status: 0
2024-06-21 07:09:00 (843411): Guest Log: 2024-06-21 05:08:57,083 [wrapper] pandaids: 6238306826
2024-06-21 07:09:00 (843411): Guest Log: 2024-06-21 05:08:57,100 [wrapper] cleanup supervisor_pilot  4371 6488
2024-06-21 07:09:00 (843411): Guest Log: 2024-06-21 05:08:57,103 [wrapper] Test setup, not cleaning
2024-06-21 07:09:00 (843411): Guest Log: 2024-06-21 05:08:57,106 [wrapper] ==== wrapper stdout END ====
2024-06-21 07:09:00 (843411): Guest Log: 2024-06-21 05:08:57,108 [wrapper] ==== wrapper stderr END ====
2024-06-21 07:09:00 (843411): Guest Log: 2024-06-21 05:08:57,114 [wrapper] apfmon messages muted
2024-06-21 07:09:00 (843411): Guest Log:  *** Error codes and diagnostics ***
2024-06-21 07:09:00 (843411): Guest Log:     "exeErrorCode": 0,
2024-06-21 07:09:00 (843411): Guest Log:     "exeErrorDiag": "",
2024-06-21 07:09:00 (843411): Guest Log:     "pilotErrorCode": 0,
2024-06-21 07:09:00 (843411): Guest Log:     "pilotErrorDiag": "",
2024-06-21 07:09:00 (843411): Guest Log:  *** Listing of results directory ***
2024-06-21 07:09:00 (843411): Guest Log: total 353112
2024-06-21 07:09:00 (843411): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 19 20:12 pilot3.tar.gz
2024-06-21 07:09:00 (843411): Guest Log: -rwx------. 1 atlas atlas     32308 Jun 19 20:30 runpilot2-wrapper.sh
2024-06-21 07:09:00 (843411): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 19 20:30 queuedata.json
2024-06-21 07:09:00 (843411): Guest Log: -rw-r--r--. 1 atlas atlas     17537 Jun 20 19:48 start_atlas.sh
2024-06-21 07:09:00 (843411): Guest Log: -rw-r--r--. 1 atlas atlas    482531 Jun 20 19:48 input.tar.gz
2024-06-21 07:09:00 (843411): Guest Log: -rw-r--r--. 1 atlas atlas      6659 Jun 20 19:48 init_data.xml
2024-06-21 07:09:00 (843411): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 20 19:48 EVNT.38776210._000935.pool.root.1 -> /data/./ATLAS.root_0
2024-06-21 07:09:00 (843411): Guest Log: -rw-r--r--. 1 atlas atlas      2646 Jun 20 19:49 pandaJob.out
2024-06-21 07:09:00 (843411): Guest Log: -rw-------. 1 atlas atlas       424 Jun 20 19:49 setup.sh.local
2024-06-21 07:09:00 (843411): Guest Log: -rw-------. 1 atlas atlas   1024128 Jun 20 19:51 agis_schedconf.cvmfs.json
2024-06-21 07:09:00 (843411): Guest Log: -rw-------. 1 atlas atlas   1321251 Jun 20 19:51 cric_ddmendpoints.json
2024-06-21 07:09:00 (843411): Guest Log: drwx------. 4 atlas atlas      4096 Jun 20 19:52 pilot3
2024-06-21 07:09:00 (843411): Guest Log: -rw-------. 1 atlas atlas 353199239 Jun 21 05:07 HITS.38921013._049426.pool.root.1
2024-06-21 07:09:00 (843411): Guest Log: -rw-------. 1 atlas atlas      1033 Jun 21 05:08 memory_monitor_summary.json
2024-06-21 07:09:00 (843411): Guest Log: -rw-------. 1 atlas atlas        95 Jun 21 05:08 pilot_heartbeat.json
2024-06-21 07:09:00 (843411): Guest Log: -rw-------. 1 atlas atlas         0 Jun 21 05:08 agis_ddmendpoints.agis.ALL.json
2024-06-21 07:09:00 (843411): Guest Log: -rw-------. 1 atlas atlas    413408 Jun 21 05:08 log.38921013._049426.job.log.tgz.1
2024-06-21 07:09:00 (843411): Guest Log: -rw-------. 1 atlas atlas      7746 Jun 21 05:08 heartbeat.json
2024-06-21 07:09:00 (843411): Guest Log: -rw-------. 1 atlas atlas      4457 Jun 21 05:08 pilotlog.txt
2024-06-21 07:09:00 (843411): Guest Log: -rw-------. 1 atlas atlas   2048845 Jun 21 05:08 log.38921013._049426.job.log.1
2024-06-21 07:09:00 (843411): Guest Log: -rw-------. 1 atlas atlas       357 Jun 21 05:08 output.list
2024-06-21 07:09:00 (843411): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 21 05:08 runtime_log
2024-06-21 07:09:00 (843411): Guest Log: -rw-------. 1 atlas atlas   2478080 Jun 21 05:08 result.tar.gz
2024-06-21 07:09:00 (843411): Guest Log: -rw-r--r--. 1 atlas atlas     11024 Jun 21 05:08 runtime_log.err
2024-06-21 07:09:00 (843411): Guest Log: -rw-------. 1 atlas atlas       679 Jun 21 05:08 bVKLDmN8Ge5n9Rq4apOajLDm4fhM0noT9bVo2ijZDm3wWKDmoJTQhn.diag
2024-06-21 07:09:00 (843411): Guest Log: Looking for outputfile HITS.38921013._049426.pool.root.1
2024-06-21 07:09:00 (843411): Guest Log: HITS file was successfully produced
2024-06-21 07:09:00 (843411): Guest Log: -rw-------. 1 atlas atlas 353199239 Jun 21 05:07 /home/atlas/RunAtlas/HITS.38921013._049426.pool.root.1
2024-06-21 07:09:00 (843411): Guest Log: Successfully finished the ATLAS job!
2024-06-21 07:09:00 (843411): Guest Log: Copying the results back to the shared directory!
2024-06-21 07:09:00 (843411): Guest Log:  *** Contents of shared directory: ***
2024-06-21 07:09:01 (843411): Guest Log: total 532912
2024-06-21 07:09:01 (843411): Guest Log: -rw-r--r--. 1 root root 542705697 Jun 20 19:47 ATLAS.root_0
2024-06-21 07:09:01 (843411): Guest Log: -rw-r--r--. 1 root root      6659 Jun 20 19:47 init_data.xml
2024-06-21 07:09:01 (843411): Guest Log: -rw-r--r--. 1 root root    482531 Jun 20 19:47 input.tar.gz
2024-06-21 07:09:01 (843411): Guest Log: -rw-r--r--. 1 root root   2478080 Jun 21 05:09 result.tar.gz
2024-06-21 07:09:01 (843411): Guest Log: -rw-r--r--. 1 root root     17537 Jun 20 19:47 start_atlas.sh
2024-06-21 07:09:01 (843411): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-21 07:09:01 (843411): VM Completion File Detected.
2024-06-21 07:09:01 (843411): Powering off VM.
2024-06-21 07:09:01 (843411): Successfully stopped VM.
2024-06-21 07:09:01 (843411): Deregistering VM. (boinc_efd922eff69d4bdd, slot#0)
2024-06-21 07:09:01 (843411): Removing network bandwidth throttle group from VM.
2024-06-21 07:09:01 (843411): Removing VM from VirtualBox.
07:09:06 (843411): called boinc_finish(0)

</stderr_txt>
]]>

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