Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:55:02 (1206418): wrapper (7.7.26015): starting
11:55:02 (1206418): wrapper: running run_atlas (--nthreads 4)
[2024-06-21 11:55:02] Arguments: --nthreads 4
[2024-06-21 11:55:02] Threads: 4
[2024-06-21 11:55:02] Checking for CVMFS
[2024-06-21 11:55:02] Probing /cvmfs/atlas.cern.ch... OK
[2024-06-21 11:55:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-06-21 11:55:02] Running cvmfs_config stat atlas.cern.ch
[2024-06-21 11:55:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-06-21 11:55:03] 2.11.3.0 971704 376 60316 134110 1 56 27419627 31457281 4605 130560 0 1098709 99.996 50891 473 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2024-06-21 11:55:03] CVMFS is ok
[2024-06-21 11:55:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-21 11:55:03] Small home clusters do not require a local http proxy but it is suggested if
[2024-06-21 11:55:03] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2024-06-21 11:55:03] Further information can be found at the LHC@home message board.
[2024-06-21 11:55:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-21 11:55:03] Checking for apptainer binary...
[2024-06-21 11:55:03] Using apptainer found in PATH at /usr/bin/apptainer
[2024-06-21 11:55:03] Running /usr/bin/apptainer --version
[2024-06-21 11:55:03] apptainer version 1.3.1-1.el9
[2024-06-21 11:55:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-21 11:55:03] Atto003
[2024-06-21 11:55:03] apptainer works
[2024-06-21 11:55:03] Set ATHENA_PROC_NUMBER=4
[2024-06-21 11:55:03] Set ATHENA_CORE_NUMBER=4
[2024-06-21 11:55:03] Starting ATLAS job with PandaID=6238302957
[2024-06-21 11:55:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-21 12:06:47]  *** The last 200 lines of the pilot log: ***
[2024-06-21 12:06:47] 2024-06-21 03:06:32,978 | INFO     | using path: /var/lib/boinc/slots/15/PanDA_Pilot-6238302957/memory_monitor_summary.json (trf name=prmon)
[2024-06-21 12:06:47] 2024-06-21 03:06:32,979 | INFO     | extracted standard info from prmon json
[2024-06-21 12:06:47] 2024-06-21 03:06:32,979 | INFO     | extracted standard memory fields from prmon json
[2024-06-21 12:06:47] 2024-06-21 03:06:32,979 | WARNING  | GPU info not found in prmon json
[2024-06-21 12:06:47] 2024-06-21 03:06:32,979 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-06-21 12:06:47] 2024-06-21 03:06:32,980 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-06-21 12:06:47] 2024-06-21 03:06:32,980 | WARNING  | wrong length of table data, x=[1718938840.0, 1718938901.0, 1718938962.0, 1718939023.0], y=[1255142.0, 1255502.0, 1281418.0, 1307147.0] (must be same and length>=4)
[2024-06-21 12:06:47] 2024-06-21 03:06:32,981 | INFO     | ..............................
[2024-06-21 12:06:47] 2024-06-21 03:06:32,981 | INFO     | . Timing measurements:
[2024-06-21 12:06:47] 2024-06-21 03:06:32,981 | INFO     | . get job = 0 s
[2024-06-21 12:06:47] 2024-06-21 03:06:32,981 | INFO     | . initial setup = 3 s
[2024-06-21 12:06:47] 2024-06-21 03:06:32,981 | INFO     | . payload setup = 3 s
[2024-06-21 12:06:47] 2024-06-21 03:06:32,981 | INFO     | . stage-in = 0 s
[2024-06-21 12:06:47] 2024-06-21 03:06:32,981 | INFO     | . payload execution = 637 s
[2024-06-21 12:06:47] 2024-06-21 03:06:32,981 | INFO     | . stage-out = 9 s
[2024-06-21 12:06:47] 2024-06-21 03:06:32,981 | INFO     | . log creation = 0 s
[2024-06-21 12:06:47] 2024-06-21 03:06:32,981 | INFO     | ..............................
[2024-06-21 12:06:47] 2024-06-21 03:06:32,981 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2024-06-21 12:06:47] 2024-06-21 03:06:32,982 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/15/PanDA_Pilot-6238302957/pilotlog.txt
[2024-06-21 12:06:47] 2024-06-21 03:06:32,994 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2024-06-21 12:06:47] - Log from pilotlog.txt -
[2024-06-21 12:06:47] 2024-06-21 03:06:32,978 | INFO     | CPU arch script returned: x86-64-v3
[2024-06-21 12:06:47] 2024-06-21 03:06:32,978 | INFO     | using path: /var/lib/boinc/slots/15/PanDA_Pilot-6238302957/memory_monitor_summary.json (trf name=prmon)
[2024-06-21 12:06:47] 2024-06-21 03:06:32,979 | INFO     | extracted standard info from prmon json
[2024-06-21 12:06:47] 2024-06-21 03:06:32,979 | INFO     | extracted standard memory fields from prmon json
[2024-06-21 12:06:47] 2024-06-21 03:06:32,979 | WARNING  | GPU info not found in prmon json
[2024-06-21 12:06:47] 2024-06-21 03:06:32,979 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-06-21 12:06:47] 2024-06-21 03:06:32,980 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-06-21 12:06:47] 2024-06-21 03:06:32,980 | WARNING  | wrong length of table data, x=[1718938840.0, 1718938901.0, 1718938962.0, 1718939023.0], y=[1255142.0, 1255502.0, 1281418.0, 1307147.0] (must be same and length>=4)
[2024-06-21 12:06:47] 2024-06-21 03:06:32,981 | INFO     | ..............................
[2024-06-21 12:06:47] 2024-06-21 03:06:32,981 | INFO     | . Timing measurements:
[2024-06-21 12:06:47] 2024-06-21 03:06:32,981 | INFO     | . get job = 0 s
[2024-06-21 12:06:47] 2024-06-21 03:06:32,981 | INFO     | . initial setup = 3 s
[2024-06-21 12:06:47] 2024-06-21 03:06:32,981 | INFO     | . payload setup = 3 s
[2024-06-21 12:06:47] 2024-06-21 03:06:32,981 | INFO     | . stage-in = 0 s
[2024-06-21 12:06:47] 2024-06-21 03:06:32,981 | INFO     | . payload execution = 637 s
[2024-06-21 12:06:47] 2024-06-21 03:06:32,981 | INFO     | . stage-out = 9 s
[2024-06-21 12:06:47] 2024-06-21 03:06:32,981 | INFO     | . log creation = 0 s
[2024-06-21 12:06:47] 2024-06-21 03:06:32,981 | INFO     | ..............................
[2024-06-21 12:06:47] 2024-06-21 03:06:32,981 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2024-06-21 12:06:47] 2024-06-21 03:06:32,982 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/15/PanDA_Pilot-6238302957/pilotlog.txt
[2024-06-21 12:06:47] 2024-06-21 03:06:32,994 | WARNING  | 
[2024-06-21 12:06:47] [begin log extracts]
[2024-06-21 12:06:47] - Log from pilotlog.txt -
[2024-06-21 12:06:47] 2024-06-21 03:06:32,978 | INFO     | CPU arch script returned: x86-64-v3
[2024-06-21 12:06:47] 2024-06-21 03:06:32,978 | INFO     | using path: /var/lib/boinc/slots/15/PanDA_Pilot-6238302957/memory_monitor_summary.json (trf name=prmon)
[2024-06-21 12:06:47] 2024-06-21 03:06:32,979 | INFO     | extracted standard info from prmon json
[2024-06-21 12:06:47] 2024-06-21 03:06:32,979 | INFO     | extracted standard memory fields from prmon json
[2024-06-21 12:06:47] 2024-06-21 03:06:32,979 | WARNING  | GPU info not found in prmon json
[2024-06-21 12:06:47] 2024-06-21 03:06:32,979 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-06-21 12:06:47] 2024-06-21 03:06:32,980 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-06-21 12:06:47] 2024-06-21 03:06:32,980 | WARNING  | wrong length of table data, x=[1718938840.0, 1718938901.0, 1718938962.0, 1718939023.0], y=[1255142.0, 1255502.0, 1281418.0, 1307147.0] (must be same and length>=4)
[2024-06-21 12:06:47] 2024-06-21 03:06:32,981 | INFO     | ..............................
[2024-06-21 12:06:47] 2024-06-21 03:06:32,981 | INFO     | . Timing measurements:
[2024-06-21 12:06:47] 2024-06-21 03:06:32,981 | INFO     | . get job = 0 s
[2024-06-21 12:06:47] 2024-06-21 03:06:32,981 | INFO     | . initial setup = 3 s
[2024-06-21 12:06:47] 2024-06-21 03:06:32,981 | INFO     | . payload setup = 3 s
[2024-06-21 12:06:47] 2024-06-21 03:06:32,981 | INFO     | . stage-in = 0 s
[2024-06-21 12:06:47] 2024-06-21 03:06:32,981 | INFO     | . payload execution = 637 s
[2024-06-21 12:06:47] 2024-06-21 03:06:32,981 | INFO     | . stage-out = 9 s
[2024-06-21 12:06:47] 2024-06-21 03:06:32,981 | INFO     | . log creation = 0 s
[2024-06-21 12:06:47] 2024-06-21 03:06:32,981 | INFO     | ..............................
[2024-06-21 12:06:47] 2024-06-21 03:06:32,981 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2024-06-21 12:06:47] 2024-06-21 03:06:32,982 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/15/PanDA_Pilot-6238302957/pilotlog.txt
[2024-06-21 12:06:47] [end log extracts]
[2024-06-21 12:06:47] 2024-06-21 03:06:32,995 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2024-06-21 12:06:47] 2024-06-21 03:06:32,995 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute 2024-06-21 03:06:04,885 CRITICAL Transform executor raised TransformValidationExcep
[2024-06-21 12:06:47] 2024-06-21 03:06:33,070 | INFO     | 
[2024-06-21 12:06:47] 2024-06-21 03:06:33,071 | INFO     | job summary report
[2024-06-21 12:06:47] 2024-06-21 03:06:33,071 | INFO     | --------------------------------------------------
[2024-06-21 12:06:47] 2024-06-21 03:06:33,071 | INFO     | PanDA job id: 6238302957
[2024-06-21 12:06:47] 2024-06-21 03:06:33,071 | INFO     | task id: 38920987
[2024-06-21 12:06:47] 2024-06-21 03:06:33,071 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2024-06-21 03:06:04,885 CRITICAL Transform executor raised TransformValidationExceptio
[2024-06-21 12:06:47] 2024-06-21 03:06:33,071 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-21 12:06:47] 2024-06-21 03:06:33,071 | INFO     | pilot state: failed 
[2024-06-21 12:06:47] 2024-06-21 03:06:33,071 | INFO     | transexitcode: 65
[2024-06-21 12:06:47] 2024-06-21 03:06:33,071 | INFO     | exeerrorcode: 65
[2024-06-21 12:06:47] 2024-06-21 03:06:33,071 | INFO     | exeerrordiag: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: "CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout
[2024-06-21 12:06:47] 2024-06-21 03:06:33,071 | INFO     | exitcode: 65
[2024-06-21 12:06:47] 2024-06-21 03:06:33,071 | INFO     | exitmsg: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: "CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout."
[2024-06-21 12:06:47] 2024-06-21 03:06:33,071 | INFO     | cpuconsumptiontime: 113 s
[2024-06-21 12:06:47] 2024-06-21 03:06:33,071 | INFO     | nevents: 0
[2024-06-21 12:06:47] 2024-06-21 03:06:33,071 | INFO     | neventsw: 0
[2024-06-21 12:06:47] 2024-06-21 03:06:33,072 | INFO     | pid: 1217347
[2024-06-21 12:06:47] 2024-06-21 03:06:33,072 | INFO     | pgrp: 1217347
[2024-06-21 12:06:47] 2024-06-21 03:06:33,072 | INFO     | corecount: 4
[2024-06-21 12:06:47] 2024-06-21 03:06:33,072 | INFO     | event service: False
[2024-06-21 12:06:47] 2024-06-21 03:06:33,072 | INFO     | sizes: {0: 2387049, 3: 2387255, 11: 2387283, 645: 2413876, 646: 2418162, 651: 2418162, 652: 2418346, 655: 2418346, 666: 2418572}
[2024-06-21 12:06:47] 2024-06-21 03:06:33,072 | INFO     | --------------------------------------------------
[2024-06-21 12:06:47] 2024-06-21 03:06:33,072 | INFO     | 
[2024-06-21 12:06:47] 2024-06-21 03:06:33,072 | INFO     | executing command: ls -lF /var/lib/boinc/slots/15
[2024-06-21 12:06:47] 2024-06-21 03:06:33,088 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-21 12:06:47] 2024-06-21 03:06:33,088 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-21 12:06:47] 2024-06-21 03:06:33,088 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-21 12:06:47] 2024-06-21 03:06:33,088 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-21 12:06:47] 2024-06-21 03:06:33,088 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-21 12:06:47] 2024-06-21 03:06:33,088 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-21 12:06:47] 2024-06-21 03:06:33,089 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-21 12:06:47] 2024-06-21 03:06:33,089 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-21 12:06:47] 2024-06-21 03:06:33,089 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-21 12:06:47] 2024-06-21 03:06:33,089 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-21 12:06:47] 2024-06-21 03:06:33,089 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-21 12:06:47] 2024-06-21 03:06:33,089 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-21 12:06:47] 2024-06-21 03:06:33,089 | INFO     | queue failed_jobs had 1 job(s) [purged]
[2024-06-21 12:06:47] 2024-06-21 03:06:33,089 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-21 12:06:47] 2024-06-21 03:06:33,089 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-21 12:06:47] 2024-06-21 03:06:33,089 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-21 12:06:47] 2024-06-21 03:06:33,089 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-21 12:06:47] 2024-06-21 03:06:33,089 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-21 12:06:47] 2024-06-21 03:06:33,089 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-21 12:06:47] 2024-06-21 03:06:33,089 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-21 12:06:47] 2024-06-21 03:06:33,090 | INFO     | job 6238302957 has completed (purged errors)
[2024-06-21 12:06:47] 2024-06-21 03:06:33,090 | INFO     | overall cleanup function is called
[2024-06-21 12:06:47] 2024-06-21 03:06:34,095 | INFO     | --- collectZombieJob: --- 10, [1217347]
[2024-06-21 12:06:47] 2024-06-21 03:06:34,095 | INFO     | zombie collector waiting for pid 1217347
[2024-06-21 12:06:47] 2024-06-21 03:06:34,095 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-21 12:06:47] 2024-06-21 03:06:35,100 | INFO     | collected zombie processes
[2024-06-21 12:06:47] 2024-06-21 03:06:35,100 | INFO     | will now attempt to kill all subprocesses of pid=1217347
[2024-06-21 12:06:47] 2024-06-21 03:06:35,186 | INFO     | process IDs to be killed: [1217347] (in reverse order)
[2024-06-21 12:06:47] 2024-06-21 03:06:35,239 | WARNING  | found no corresponding commands to process id(s)
[2024-06-21 12:06:47] 2024-06-21 03:06:35,239 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-21 12:06:47] 2024-06-21 03:06:35,243 | INFO     | did not find any defunct processes belonging to 1217347
[2024-06-21 12:06:47] 2024-06-21 03:06:35,248 | INFO     | did not find any defunct processes belonging to 1217347
[2024-06-21 12:06:47] 2024-06-21 03:06:35,248 | INFO     | ready for new job
[2024-06-21 12:06:47] 2024-06-21 03:06:35,248 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-21 12:06:47] 2024-06-21 03:06:35,249 | INFO     | *************************************
[2024-06-21 12:06:47] 2024-06-21 03:06:35,249 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-21 12:06:47] 2024-06-21 03:06:35,249 | INFO     | *************************************
[2024-06-21 12:06:47] 2024-06-21 03:06:35,249 | INFO     | 
[2024-06-21 12:06:47] 2024-06-21 03:06:35,262 | INFO     | architecture information:
[2024-06-21 12:06:47] 2024-06-21 03:06:35,262 | INFO     | executing command: cat /etc/os-release
[2024-06-21 12:06:47] 2024-06-21 03:06:35,275 | INFO     | cat /etc/os-release:
[2024-06-21 12:06:47] NAME="CentOS Linux"
[2024-06-21 12:06:47] VERSION="7 (Core)"
[2024-06-21 12:06:47] ID="centos"
[2024-06-21 12:06:47] ID_LIKE="rhel fedora"
[2024-06-21 12:06:47] VERSION_ID="7"
[2024-06-21 12:06:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-21 12:06:47] ANSI_COLOR="0;31"
[2024-06-21 12:06:47] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-21 12:06:47] HOME_URL="https://www.centos.org/"
[2024-06-21 12:06:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-21 12:06:47] 
[2024-06-21 12:06:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-21 12:06:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-21 12:06:47] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-21 12:06:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-21 12:06:47] 
[2024-06-21 12:06:47] 2024-06-21 03:06:35,275 | INFO     | *************************************
[2024-06-21 12:06:47] 2024-06-21 03:06:35,776 | INFO     | executing command: df -mP /var/lib/boinc/slots/15
[2024-06-21 12:06:47] 2024-06-21 03:06:35,790 | INFO     | sufficient remaining disk space (112272080896 B)
[2024-06-21 12:06:47] 2024-06-21 03:06:35,790 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-21 12:06:47] 2024-06-21 03:06:35,790 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-21 12:06:47] 2024-06-21 03:06:35,790 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-06-21 12:06:47] 2024-06-21 03:06:35,791 | INFO     | found 0 job(s) in 20 queues
[2024-06-21 12:06:47] 2024-06-21 03:06:35,791 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-21 12:06:47] 2024-06-21 03:06:35,791 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-21 12:06:47] 2024-06-21 03:06:35,791 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-21 12:06:47] 2024-06-21 03:06:35,935 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-06-21 12:06:47] 2024-06-21 03:06:35,935 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-06-21 12:06:47] 2024-06-21 03:06:35,935 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-21 12:06:47] 2024-06-21 03:06:35,935 | INFO     | will abort loop
[2024-06-21 12:06:47] 2024-06-21 03:06:35,982 | INFO     | all payload control threads have been joined
[2024-06-21 12:06:47] 2024-06-21 03:06:36,095 | INFO     | all data control threads have been joined
[2024-06-21 12:06:47] 2024-06-21 03:06:36,335 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-21 12:06:47] 2024-06-21 03:06:36,795 | INFO     | [job] retrieve thread has finished
[2024-06-21 12:06:47] 2024-06-21 03:06:36,881 | INFO     | all job control threads have been joined
[2024-06-21 12:06:47] 2024-06-21 03:06:36,940 | INFO     | [job] job monitor thread has finished
[2024-06-21 12:06:47] 2024-06-21 03:06:36,987 | INFO     | [payload] control thread has finished
[2024-06-21 12:06:47] 2024-06-21 03:06:37,100 | INFO     | [data] control thread has finished
[2024-06-21 12:06:47] 2024-06-21 03:06:37,796 | INFO     | [data] copytool_out thread has finished
[2024-06-21 12:06:47] 2024-06-21 03:06:37,828 | INFO     | [payload] execute_payloads thread has finished
[2024-06-21 12:06:47] 2024-06-21 03:06:37,848 | INFO     | [job] validate thread has finished
[2024-06-21 12:06:47] 2024-06-21 03:06:37,886 | INFO     | [job] control thread has finished
[2024-06-21 12:06:47] 2024-06-21 03:06:37,906 | INFO     | [payload] failed_post thread has finished
[2024-06-21 12:06:47] 2024-06-21 03:06:38,030 | INFO     | [payload] validate_post thread has finished
[2024-06-21 12:06:47] 2024-06-21 03:06:38,071 | INFO     | [job] create_data_payload thread has finished
[2024-06-21 12:06:47] 2024-06-21 03:06:38,080 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-21 12:06:47] 2024-06-21 03:06:38,149 | INFO     | [data] copytool_in thread has finished
[2024-06-21 12:06:47] 2024-06-21 03:06:38,183 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-21 12:06:47] 2024-06-21 03:06:38,215 | INFO     | [payload] validate_pre thread has finished
[2024-06-21 12:06:47] 2024-06-21 03:06:39,085 | INFO     | [job] queue monitor thread has finished
[2024-06-21 12:06:47] 2024-06-21 03:06:40,340 | INFO     | [data] queue_monitor thread has finished
[2024-06-21 12:06:47] 2024-06-21 03:06:42,423 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140267187640128)>', '<ExcThread(monitor, started 140266677708544)>']
[2024-06-21 12:06:47] 2024-06-21 03:06:42,825 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-21 12:06:47] 2024-06-21 03:06:42,825 | INFO     | [monitor] control thread has ended
[2024-06-21 12:06:47] 2024-06-21 03:06:47,448 | INFO     | all workflow threads have been joined
[2024-06-21 12:06:47] 2024-06-21 03:06:47,448 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-21 12:06:47] 2024-06-21 03:06:47,448 | INFO     | traces error code: 0
[2024-06-21 12:06:47] 2024-06-21 03:06:47,449 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-21 12:06:47] 2024-06-21 03:06:47,515 [wrapper] ==== pilot stdout END ====
[2024-06-21 12:06:47] 2024-06-21 03:06:47,517 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-21 12:06:47] 2024-06-21 03:06:47,519 [wrapper] pilotpid: 1210728
[2024-06-21 12:06:47] 2024-06-21 03:06:47,521 [wrapper] Pilot exit status: 0
[2024-06-21 12:06:47] 2024-06-21 03:06:47,528 [wrapper] pandaids: 6238302957
[2024-06-21 12:06:47] 2024-06-21 03:06:47,560 [wrapper] cleanup supervisor_pilot 1210733 1210729
[2024-06-21 12:06:47] 2024-06-21 03:06:47,563 [wrapper] Test setup, not cleaning
[2024-06-21 12:06:47] 2024-06-21 03:06:47,565 [wrapper] ==== wrapper stdout END ====
[2024-06-21 12:06:47] 2024-06-21 03:06:47,567 [wrapper] ==== wrapper stderr END ====
[2024-06-21 12:06:47] 2024-06-21 03:06:47,570 [wrapper] apfmon messages muted
[2024-06-21 12:06:47]  *** Error codes and diagnostics ***
[2024-06-21 12:06:47]     "exeErrorCode": 65,
[2024-06-21 12:06:47]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
[2024-06-21 12:06:47]     "pilotErrorCode": 1305,
[2024-06-21 12:06:47]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute 2024-06-21 03:06:04,885 CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
[2024-06-21 12:06:47]  *** Listing of results directory ***
[2024-06-21 12:06:47] total 629264
[2024-06-21 12:06:47] -rw-r--r--. 1 boinc boinc    469766 Jun 20 05:12 pilot3.tar.gz
[2024-06-21 12:06:47] -rw-r--r--. 1 boinc boinc      5654 Jun 20 05:15 queuedata.json
[2024-06-21 12:06:47] -rwx------. 1 boinc boinc     32308 Jun 20 05:16 runpilot2-wrapper.sh
[2024-06-21 12:06:47] -rw-r--r--. 1 boinc boinc       100 Jun 21 11:55 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-21 12:06:47] -rwxr-xr-x. 1 boinc boinc      7986 Jun 21 11:55 run_atlas
[2024-06-21 12:06:47] -rw-r--r--. 1 boinc boinc       105 Jun 21 11:55 job.xml
[2024-06-21 12:06:47] -rw-r--r--. 1 boinc boinc      9518 Jun 21 11:55 init_data.xml
[2024-06-21 12:06:47] -rw-r--r--. 2 boinc boinc 640487204 Jun 21 11:55 EVNT.38776170._000598.pool.root.1
[2024-06-21 12:06:47] -rw-r--r--. 2 boinc boinc     17537 Jun 21 11:55 start_atlas.sh
[2024-06-21 12:06:47] drwxrwx--x. 2 boinc boinc        68 Jun 21 11:55 shared
[2024-06-21 12:06:47] -rw-r--r--. 2 boinc boinc    482530 Jun 21 11:55 input.tar.gz
[2024-06-21 12:06:47] -rw-r--r--. 1 boinc boinc         0 Jun 21 11:55 boinc_lockfile
[2024-06-21 12:06:47] -rw-r--r--. 1 boinc boinc      2615 Jun 21 11:55 pandaJob.out
[2024-06-21 12:06:47] -rw-------. 1 boinc boinc       424 Jun 21 11:55 setup.sh.local
[2024-06-21 12:06:47] -rw-------. 1 boinc boinc   1024126 Jun 21 11:55 agis_schedconf.cvmfs.json
[2024-06-21 12:06:47] -rw-------. 1 boinc boinc         0 Jun 21 11:55 agis_ddmendpoints.agis.ALL.json
[2024-06-21 12:06:47] -rw-------. 1 boinc boinc   1321251 Jun 21 11:55 cric_ddmendpoints.json
[2024-06-21 12:06:47] drwx------. 4 boinc boinc      4096 Jun 21 11:55 pilot3
[2024-06-21 12:06:47] -rw-r--r--. 1 boinc boinc       526 Jun 21 12:05 boinc_task_state.xml
[2024-06-21 12:06:47] -rw-------. 1 boinc boinc      1021 Jun 21 12:06 memory_monitor_summary.json
[2024-06-21 12:06:47] -rw-------. 1 boinc boinc        95 Jun 21 12:06 pilot_heartbeat.json
[2024-06-21 12:06:47] -rw-------. 1 boinc boinc     57969 Jun 21 12:06 log.38920987._059265.job.log.tgz.1
[2024-06-21 12:06:47] -rw-r--r--. 1 boinc boinc      8192 Jun 21 12:06 boinc_mmap_file
[2024-06-21 12:06:47] -rw-r--r--. 1 boinc boinc        23 Jun 21 12:06 wrapper_checkpoint.txt
[2024-06-21 12:06:47] -rw-------. 1 boinc boinc      9771 Jun 21 12:06 heartbeat.json
[2024-06-21 12:06:47] -rw-------. 1 boinc boinc      4522 Jun 21 12:06 pilotlog.txt
[2024-06-21 12:06:47] -rw-------. 1 boinc boinc    115792 Jun 21 12:06 log.38920987._059265.job.log.1
[2024-06-21 12:06:47] -rw-------. 1 boinc boinc       188 Jun 21 12:06 output.list
[2024-06-21 12:06:47] -rw-r--r--. 1 boinc boinc       620 Jun 21 12:06 runtime_log
[2024-06-21 12:06:47] -rw-------. 1 boinc boinc    194560 Jun 21 12:06 result.tar.gz
[2024-06-21 12:06:47] -rw-r--r--. 1 boinc boinc     10812 Jun 21 12:06 runtime_log.err
[2024-06-21 12:06:47] -rw-------. 1 boinc boinc       621 Jun 21 12:06 LEQNDmBuGe5n9Rq4apOajLDm4fhM0noT9bVo2ijZDmTwWKDmBzDzxm.diag
[2024-06-21 12:06:47] -rw-r--r--. 1 boinc boinc     22526 Jun 21 12:06 stderr.txt
[2024-06-21 12:06:47] No HITS result produced
[2024-06-21 12:06:47]  *** Contents of shared directory: ***
[2024-06-21 12:06:47] total 626160
[2024-06-21 12:06:47] -rw-r--r--. 2 boinc boinc 640487204 Jun 21 11:55 ATLAS.root_0
[2024-06-21 12:06:47] -rw-r--r--. 2 boinc boinc     17537 Jun 21 11:55 start_atlas.sh
[2024-06-21 12:06:47] -rw-r--r--. 2 boinc boinc    482530 Jun 21 11:55 input.tar.gz
[2024-06-21 12:06:47] -rw-------. 1 boinc boinc    194560 Jun 21 12:06 result.tar.gz
12:06:49 (1206418): run_atlas exited; CPU time 106.797139
12:06:49 (1206418): called boinc_finish(0)

</stderr_txt>
]]>

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