Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-20 17:59:04 (1486725): Detected: vboxwrapper 26206
2024-06-20 17:59:04 (1486725): Detected: BOINC client v7.24.1
2024-06-20 17:59:04 (1486725): Detected: VirtualBox VboxManage Interface (Version: 7.0.18)
2024-06-20 17:59:04 (1486725): Successfully copied 'init_data.xml' to the shared directory.
2024-06-20 17:59:04 (1486725): Create VM. (boinc_4866a70a3af49205, slot#0)
2024-06-20 17:59:04 (1486725): Setting Memory Size for VM. (4400MB)
2024-06-20 17:59:04 (1486725): Setting CPU Count for VM. (4)
2024-06-20 17:59:05 (1486725): Setting Chipset Options for VM.
2024-06-20 17:59:05 (1486725): Setting Graphics Controller Options for VM.
2024-06-20 17:59:05 (1486725): Setting Boot Options for VM.
2024-06-20 17:59:05 (1486725): Setting Network Configuration for NAT.
2024-06-20 17:59:05 (1486725): Enabling VM Network Access.
2024-06-20 17:59:05 (1486725): Disabling USB Support for VM.
2024-06-20 17:59:05 (1486725): Disabling COM Port Support for VM.
2024-06-20 17:59:05 (1486725): Disabling LPT Port Support for VM.
2024-06-20 17:59:06 (1486725): Disabling Audio Support for VM.
2024-06-20 17:59:06 (1486725): Disabling Clipboard Support for VM.
2024-06-20 17:59:06 (1486725): Disabling Drag and Drop Support for VM.
2024-06-20 17:59:06 (1486725): Adding storage controller(s) to VM.
2024-06-20 17:59:06 (1486725): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-20 17:59:08 (1486725): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-20 17:59:08 (1486725): forwarding host port 59099 to guest port 80
2024-06-20 17:59:08 (1486725): Enabling remote desktop for VM.
2024-06-20 17:59:08 (1486725): Required extension pack not installed, remote desktop not enabled.
2024-06-20 17:59:08 (1486725): Enabling shared directory for VM.
2024-06-20 17:59:08 (1486725): Starting VM using VBoxManage interface. (boinc_4866a70a3af49205, slot#0)
2024-06-20 17:59:10 (1486725): Successfully started VM. (PID = '1486986')
2024-06-20 17:59:10 (1486725): Reporting VM Process ID to BOINC.
2024-06-20 17:59:10 (1486725): Guest Log: BIOS: VirtualBox 7.0.18
2024-06-20 17:59:10 (1486725): Guest Log: CPUID EDX: 0x178bfbff
2024-06-20 17:59:10 (1486725): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-20 17:59:10 (1486725): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-20 17:59:10 (1486725): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-20 17:59:10 (1486725): Detected: Web Application Enabled (http://localhost:59099)
2024-06-20 17:59:10 (1486725): Preference change detected
2024-06-20 17:59:10 (1486725): Setting CPU throttle for VM. (50%)
2024-06-20 17:59:10 (1486725): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-20 17:59:12 (1486725): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-20 17:59:12 (1486725): Guest Log: BIOS: Booting from Hard Disk...
2024-06-20 17:59:16 (1486725): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-20 17:59:16 (1486725): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-20 17:59:16 (1486725): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-20 17:59:16 (1486725): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-20 17:59:16 (1486725): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-20 17:59:16 (1486725): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-20 17:59:16 (1486725): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-20 17:59:16 (1486725): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-20 17:59:16 (1486725): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-20 17:59:16 (1486725): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-20 17:59:16 (1486725): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-20 17:59:16 (1486725): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-20 17:59:16 (1486725): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-20 17:59:16 (1486725): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-20 17:59:16 (1486725): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-20 17:59:16 (1486725): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-20 17:59:16 (1486725): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-20 17:59:16 (1486725): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-20 17:59:16 (1486725): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-20 17:59:16 (1486725): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-20 17:59:16 (1486725): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-20 17:59:16 (1486725): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-20 17:59:16 (1486725): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-20 17:59:16 (1486725): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-20 17:59:16 (1486725): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-20 17:59:16 (1486725): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-20 17:59:16 (1486725): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-20 17:59:16 (1486725): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-20 17:59:16 (1486725): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-20 17:59:16 (1486725): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-20 17:59:16 (1486725): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-20 17:59:16 (1486725): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-20 17:59:25 (1486725): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-20 17:59:25 (1486725): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-20 17:59:36 (1486725): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-20 17:59:36 (1486725): Guest Log: 00:00:00.000143 main     Log opened 2024-06-20T15:59:35.279057000Z
2024-06-20 17:59:36 (1486725): Guest Log: 00:00:00.000249 main     OS Product: Linux
2024-06-20 17:59:36 (1486725): Guest Log: 00:00:00.000278 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-20 17:59:36 (1486725): Guest Log: 00:00:00.000296 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-20 17:59:36 (1486725): Guest Log: 00:00:00.000314 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-20 17:59:36 (1486725): Guest Log: 00:00:00.000314 main     Process ID: 1294
2024-06-20 17:59:36 (1486725): Guest Log: 00:00:00.000315 main     Package type: LINUX_64BITS_GENERIC
2024-06-20 17:59:36 (1486725): Guest Log: 00:00:00.002353 main     5.2.32 r132073 started. Verbose level = 0
2024-06-20 17:59:37 (1486725): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-20 17:59:37 (1486725): Guest Log: [INFO] Mounting shared directory
2024-06-20 17:59:37 (1486725): Guest Log: [INFO] Checking for init_data.xml
2024-06-20 17:59:49 (1486725): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-20 17:59:49 (1486725): Guest Log: [INFO] Detected branch: prod
2024-06-20 17:59:49 (1486725): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-20 17:59:49 (1486725): Guest Log: Copying input files
2024-06-20 18:00:01 (1486725): Guest Log: Copied input files into RunAtlas.
2024-06-20 18:00:02 (1486725): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-06-20 18:00:02 (1486725): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-06-20 18:00:02 (1486725): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-06-20 18:00:02 (1486725): Guest Log: Further information can be found at the LHC@home message board.
2024-06-20 18:02:24 (1486725): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-20 18:02:25 (1486725): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-20 18:02:25 (1486725): Guest Log: 2.6.3.0 1571 2 30240 134093 4 1 3117205 4096000 0 65024 0 0 n/a 1 8 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
2024-06-20 18:02:27 (1486725): Guest Log: copied the webapp to /var/www
2024-06-20 18:02:27 (1486725): Guest Log: ATHENA_PROC_NUMBER=4
2024-06-20 18:02:27 (1486725): Guest Log: ATHENA_CORE_NUMBER=4
2024-06-20 18:02:27 (1486725): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-20 18:02:27 (1486725): Guest Log:  *** Starting ATLAS job. (PandaID=6238154888 taskID=38920987) ***
2024-06-20 19:38:10 (1486725): Status Report: Elapsed Time: '6000.000000'
2024-06-20 19:38:10 (1486725): Status Report: CPU Time: '10184.700000'
2024-06-20 21:17:11 (1486725): Status Report: Elapsed Time: '12000.000000'
2024-06-20 21:17:11 (1486725): Status Report: CPU Time: '22444.950000'
2024-06-20 22:56:11 (1486725): Status Report: Elapsed Time: '18000.000000'
2024-06-20 22:56:11 (1486725): Status Report: CPU Time: '34710.150000'
2024-06-20 23:51:39 (1486725): Guest Log:  *** Job finished ***
2024-06-20 23:51:39 (1486725): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-20 23:51:39 (1486725): Guest Log: 2024-06-20 21:51:22,100 | INFO     | [data] queue_monitor thread has finished
2024-06-20 23:51:39 (1486725): Guest Log: 2024-06-20 21:51:26,099 | INFO     | job.realtimelogging is not enabled
2024-06-20 23:51:39 (1486725): Guest Log: 2024-06-20 21:51:27,101 | INFO     | [payload] run_realtimelog thread has finished
2024-06-20 23:51:39 (1486725): Guest Log: 2024-06-20 21:51:27,745 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140523739793216)>', '<ExcThread(monitor, started 140522832242432)>']
2024-06-20 23:51:39 (1486725): Guest Log: 2024-06-20 21:51:28,130 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-20 23:51:39 (1486725): Guest Log: 2024-06-20 21:51:28,130 | INFO     | [monitor] control thread has ended
2024-06-20 23:51:39 (1486725): Guest Log: 2024-06-20 21:51:32,751 | INFO     | all workflow threads have been joined
2024-06-20 23:51:39 (1486725): Guest Log: 2024-06-20 21:51:32,751 | INFO     | end of generic workflow (traces error code: 0)
2024-06-20 23:51:39 (1486725): Guest Log: 2024-06-20 21:51:32,752 | INFO     | traces error code: 0
2024-06-20 23:51:39 (1486725): Guest Log: 2024-06-20 21:51:32,752 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-20 23:51:39 (1486725): Guest Log: 2024-06-20 21:51:33,457 [wrapper] ==== pilot stdout END ====
2024-06-20 23:51:39 (1486725): Guest Log: 2024-06-20 21:51:33,460 [wrapper] ==== wrapper stdout RESUME ====
2024-06-20 23:51:39 (1486725): Guest Log: 2024-06-20 21:51:33,464 [wrapper] pilotpid: 6474
2024-06-20 23:51:39 (1486725): Guest Log: 2024-06-20 21:51:33,467 [wrapper] Pilot exit status: 0
2024-06-20 23:51:39 (1486725): Guest Log: 2024-06-20 21:51:33,547 [wrapper] pandaids: 6238154888
2024-06-20 23:51:39 (1486725): Guest Log: 2024-06-20 21:51:33,620 [wrapper] cleanup supervisor_pilot 20249 6475
2024-06-20 23:51:39 (1486725): Guest Log: 2024-06-20 21:51:33,625 [wrapper] Test setup, not cleaning
2024-06-20 23:51:39 (1486725): Guest Log: 2024-06-20 21:51:33,629 [wrapper] ==== wrapper stdout END ====
2024-06-20 23:51:39 (1486725): Guest Log: 2024-06-20 21:51:33,633 [wrapper] ==== wrapper stderr END ====
2024-06-20 23:51:39 (1486725): Guest Log: 2024-06-20 21:51:33,671 [wrapper] apfmon messages muted
2024-06-20 23:51:39 (1486725): Guest Log:  *** Error codes and diagnostics ***
2024-06-20 23:51:39 (1486725): Guest Log:     "exeErrorCode": 0,
2024-06-20 23:51:39 (1486725): Guest Log:     "exeErrorDiag": "",
2024-06-20 23:51:39 (1486725): Guest Log:     "pilotErrorCode": 0,
2024-06-20 23:51:39 (1486725): Guest Log:     "pilotErrorDiag": "",
2024-06-20 23:51:39 (1486725): Guest Log:  *** Listing of results directory ***
2024-06-20 23:51:39 (1486725): Guest Log: total 328100
2024-06-20 23:51:39 (1486725): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 19 17:07 pilot3.tar.gz
2024-06-20 23:51:39 (1486725): Guest Log: -rwx------. 1 atlas atlas     32308 Jun 19 17:25 runpilot2-wrapper.sh
2024-06-20 23:51:39 (1486725): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 19 17:25 queuedata.json
2024-06-20 23:51:39 (1486725): Guest Log: -rw-r--r--. 1 atlas atlas     17537 Jun 20 15:59 start_atlas.sh
2024-06-20 23:51:39 (1486725): Guest Log: -rw-r--r--. 1 atlas atlas      6656 Jun 20 15:59 init_data.xml
2024-06-20 23:51:39 (1486725): Guest Log: -rw-r--r--. 1 atlas atlas    482517 Jun 20 15:59 input.tar.gz
2024-06-20 23:51:39 (1486725): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 20 16:00 EVNT.38776170._000769.pool.root.1 -> /data/./ATLAS.root_0
2024-06-20 23:51:39 (1486725): Guest Log: -rw-r--r--. 1 atlas atlas      2617 Jun 20 16:02 pandaJob.out
2024-06-20 23:51:39 (1486725): Guest Log: -rw-------. 1 atlas atlas       424 Jun 20 16:02 setup.sh.local
2024-06-20 23:51:39 (1486725): Guest Log: -rw-------. 1 atlas atlas   1020792 Jun 20 16:02 agis_schedconf.cvmfs.json
2024-06-20 23:51:39 (1486725): Guest Log: -rw-------. 1 atlas atlas   1321251 Jun 20 16:02 cric_ddmendpoints.json
2024-06-20 23:51:39 (1486725): Guest Log: drwx------. 4 atlas atlas      4096 Jun 20 16:02 pilot3
2024-06-20 23:51:39 (1486725): Guest Log: -rw-------. 1 atlas atlas 329680946 Jun 20 21:50 HITS.38920987._059207.pool.root.1
2024-06-20 23:51:39 (1486725): Guest Log: -rw-------. 1 atlas atlas        95 Jun 20 21:50 pilot_heartbeat.json
2024-06-20 23:51:39 (1486725): Guest Log: -rw-------. 1 atlas atlas      1046 Jun 20 21:50 memory_monitor_summary.json
2024-06-20 23:51:39 (1486725): Guest Log: -rw-------. 1 atlas atlas         0 Jun 20 21:50 agis_ddmendpoints.agis.ALL.json
2024-06-20 23:51:39 (1486725): Guest Log: -rw-------. 1 atlas atlas    338676 Jun 20 21:51 log.38920987._059207.job.log.tgz.1
2024-06-20 23:51:39 (1486725): Guest Log: -rw-------. 1 atlas atlas      7740 Jun 20 21:51 heartbeat.json
2024-06-20 23:51:39 (1486725): Guest Log: -rw-------. 1 atlas atlas      4343 Jun 20 21:51 pilotlog.txt
2024-06-20 23:51:39 (1486725): Guest Log: -rw-------. 1 atlas atlas   1079238 Jun 20 21:51 log.38920987._059207.job.log.1
2024-06-20 23:51:39 (1486725): Guest Log: -rw-------. 1 atlas atlas       357 Jun 20 21:51 output.list
2024-06-20 23:51:39 (1486725): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 20 21:51 runtime_log
2024-06-20 23:51:39 (1486725): Guest Log: -rw-------. 1 atlas atlas   1433600 Jun 20 21:51 result.tar.gz
2024-06-20 23:51:39 (1486725): Guest Log: -rw-r--r--. 1 atlas atlas     11012 Jun 20 21:51 runtime_log.err
2024-06-20 23:51:39 (1486725): Guest Log: -rw-------. 1 atlas atlas       673 Jun 20 21:51 mgJKDmzEEe5n7Olcko1bjSoqABFKDmABFKDmOtvXDmrbqKDm2Pwmom.diag
2024-06-20 23:51:39 (1486725): Guest Log: Looking for outputfile HITS.38920987._059207.pool.root.1
2024-06-20 23:51:39 (1486725): Guest Log: HITS file was successfully produced
2024-06-20 23:51:39 (1486725): Guest Log: -rw-------. 1 atlas atlas 329680946 Jun 20 21:50 /home/atlas/RunAtlas/HITS.38920987._059207.pool.root.1
2024-06-20 23:51:39 (1486725): Guest Log: Successfully finished the ATLAS job!
2024-06-20 23:51:39 (1486725): Guest Log: Copying the results back to the shared directory!
2024-06-20 23:51:39 (1486725): Guest Log:  *** Contents of shared directory: ***
2024-06-20 23:51:39 (1486725): Guest Log: total 623672
2024-06-20 23:51:39 (1486725): Guest Log: -rw-r--r--. 1 root root 636689428 Jun 20 15:59 ATLAS.root_0
2024-06-20 23:51:39 (1486725): Guest Log: -rw-r--r--. 1 root root      6656 Jun 20 15:59 init_data.xml
2024-06-20 23:51:39 (1486725): Guest Log: -rw-r--r--. 1 root root    482517 Jun 20 15:59 input.tar.gz
2024-06-20 23:51:39 (1486725): Guest Log: -rw-r--r--. 1 root root   1433600 Jun 20  2024 result.tar.gz
2024-06-20 23:51:39 (1486725): Guest Log: -rw-r--r--. 1 root root     17537 Jun 20 15:59 start_atlas.sh
2024-06-20 23:51:39 (1486725): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-20 23:51:40 (1486725): VM Completion File Detected.
2024-06-20 23:51:40 (1486725): Powering off VM.
2024-06-20 23:51:40 (1486725): Successfully stopped VM.
2024-06-20 23:51:40 (1486725): Deregistering VM. (boinc_4866a70a3af49205, slot#0)
2024-06-20 23:51:40 (1486725): Removing network bandwidth throttle group from VM.
2024-06-20 23:51:40 (1486725): Removing VM from VirtualBox.
23:51:46 (1486725): called boinc_finish(0)

</stderr_txt>
]]>

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