Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-20 18:50:49 (1398517): Detected: vboxwrapper 26206
2024-06-20 18:50:49 (1398517): Detected: BOINC client v7.24.1
2024-06-20 18:50:49 (1398517): Detected: VirtualBox VboxManage Interface (Version: 7.0.18)
2024-06-20 18:50:49 (1398517): Successfully copied 'init_data.xml' to the shared directory.
2024-06-20 18:50:49 (1398517): Create VM. (boinc_36e4ddb4769309e2, slot#0)
2024-06-20 18:50:49 (1398517): Setting Memory Size for VM. (4600MB)
2024-06-20 18:50:50 (1398517): Setting CPU Count for VM. (6)
2024-06-20 18:50:50 (1398517): Setting Chipset Options for VM.
2024-06-20 18:50:50 (1398517): Setting Graphics Controller Options for VM.
2024-06-20 18:50:50 (1398517): Setting Boot Options for VM.
2024-06-20 18:50:50 (1398517): Setting Network Configuration for NAT.
2024-06-20 18:50:50 (1398517): Enabling VM Network Access.
2024-06-20 18:50:50 (1398517): Disabling USB Support for VM.
2024-06-20 18:50:50 (1398517): Disabling COM Port Support for VM.
2024-06-20 18:50:51 (1398517): Disabling LPT Port Support for VM.
2024-06-20 18:50:51 (1398517): Disabling Audio Support for VM.
2024-06-20 18:50:51 (1398517): Disabling Clipboard Support for VM.
2024-06-20 18:50:51 (1398517): Disabling Drag and Drop Support for VM.
2024-06-20 18:50:51 (1398517): Adding storage controller(s) to VM.
2024-06-20 18:50:51 (1398517): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-20 18:50:53 (1398517): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-20 18:50:53 (1398517): forwarding host port 36961 to guest port 80
2024-06-20 18:50:53 (1398517): Enabling remote desktop for VM.
2024-06-20 18:50:53 (1398517): Required extension pack not installed, remote desktop not enabled.
2024-06-20 18:50:53 (1398517): Enabling shared directory for VM.
2024-06-20 18:50:54 (1398517): Starting VM using VBoxManage interface. (boinc_36e4ddb4769309e2, slot#0)
2024-06-20 18:50:55 (1398517): Successfully started VM. (PID = '1398771')
2024-06-20 18:50:55 (1398517): Reporting VM Process ID to BOINC.
2024-06-20 18:50:55 (1398517): Guest Log: BIOS: VirtualBox 7.0.18
2024-06-20 18:50:55 (1398517): Guest Log: CPUID EDX: 0x178bfbff
2024-06-20 18:50:55 (1398517): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-20 18:50:55 (1398517): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-20 18:50:55 (1398517): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-20 18:50:55 (1398517): Detected: Web Application Enabled (http://localhost:36961)
2024-06-20 18:50:55 (1398517): Preference change detected
2024-06-20 18:50:55 (1398517): Setting CPU throttle for VM. (50%)
2024-06-20 18:50:55 (1398517): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-20 18:50:57 (1398517): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-20 18:50:57 (1398517): Guest Log: BIOS: Booting from Hard Disk...
2024-06-20 18:51:00 (1398517): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-20 18:51:00 (1398517): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-20 18:51:00 (1398517): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-20 18:51:00 (1398517): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-20 18:51:00 (1398517): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-20 18:51:00 (1398517): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-20 18:51:00 (1398517): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-20 18:51:00 (1398517): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-20 18:51:00 (1398517): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-20 18:51:00 (1398517): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-20 18:51:00 (1398517): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-20 18:51:00 (1398517): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-20 18:51:00 (1398517): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-20 18:51:00 (1398517): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-20 18:51:00 (1398517): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-20 18:51:00 (1398517): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-20 18:51:00 (1398517): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-20 18:51:00 (1398517): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-20 18:51:00 (1398517): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-20 18:51:00 (1398517): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-20 18:51:00 (1398517): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-20 18:51:00 (1398517): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-20 18:51:00 (1398517): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-20 18:51:00 (1398517): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-20 18:51:00 (1398517): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-20 18:51:00 (1398517): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-20 18:51:00 (1398517): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-20 18:51:00 (1398517): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-20 18:51:00 (1398517): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-20 18:51:00 (1398517): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-20 18:51:00 (1398517): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-20 18:51:00 (1398517): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-20 18:51:11 (1398517): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-20 18:51:11 (1398517): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-20 18:51:19 (1398517): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-20 18:51:19 (1398517): Guest Log: 00:00:00.000098 main     Log opened 2024-06-20T16:51:18.086369000Z
2024-06-20 18:51:19 (1398517): Guest Log: 00:00:00.000165 main     OS Product: Linux
2024-06-20 18:51:19 (1398517): Guest Log: 00:00:00.000185 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-20 18:51:19 (1398517): Guest Log: 00:00:00.000201 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-20 18:51:19 (1398517): Guest Log: 00:00:00.000216 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-20 18:51:19 (1398517): Guest Log: 00:00:00.000217 main     Process ID: 1327
2024-06-20 18:51:19 (1398517): Guest Log: 00:00:00.000218 main     Package type: LINUX_64BITS_GENERIC
2024-06-20 18:51:19 (1398517): Guest Log: 00:00:00.001470 main     5.2.32 r132073 started. Verbose level = 0
2024-06-20 18:51:20 (1398517): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-20 18:51:20 (1398517): Guest Log: [INFO] Mounting shared directory
2024-06-20 18:51:20 (1398517): Guest Log: [INFO] Checking for init_data.xml
2024-06-20 18:51:23 (1398517): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-20 18:51:23 (1398517): Guest Log: [INFO] Detected branch: prod
2024-06-20 18:51:23 (1398517): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-20 18:51:23 (1398517): Guest Log: Copying input files
2024-06-20 18:51:32 (1398517): Guest Log: Copied input files into RunAtlas.
2024-06-20 18:51:32 (1398517): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-06-20 18:51:32 (1398517): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-06-20 18:51:32 (1398517): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-06-20 18:51:32 (1398517): Guest Log: Further information can be found at the LHC@home message board.
2024-06-20 18:52:07 (1398517): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-20 18:52:07 (1398517): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-20 18:52:07 (1398517): Guest Log: 2.6.3.0 1601 0 30204 134095 4 1 3117205 4096000 0 65024 0 0 n/a 1 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.35.143:3126 1
2024-06-20 18:52:10 (1398517): Guest Log: copied the webapp to /var/www
2024-06-20 18:52:10 (1398517): Guest Log: ATHENA_PROC_NUMBER=6
2024-06-20 18:52:10 (1398517): Guest Log: ATHENA_CORE_NUMBER=6
2024-06-20 18:52:10 (1398517): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-20 18:52:10 (1398517): Guest Log:  *** Starting ATLAS job. (PandaID=6237845576 taskID=38921007) ***
2024-06-20 20:29:55 (1398517): Status Report: Elapsed Time: '6000.000000'
2024-06-20 20:29:55 (1398517): Status Report: CPU Time: '14298.240000'
2024-06-20 22:08:56 (1398517): Status Report: Elapsed Time: '12000.000000'
2024-06-20 22:08:56 (1398517): Status Report: CPU Time: '33612.830000'
2024-06-20 22:23:24 (1398517): VM state change detected. (old = 'running', new = 'paused')
2024-06-20 22:23:46 (1398517): VM state change detected. (old = 'paused', new = 'running')
2024-06-20 23:48:19 (1398517): Status Report: Elapsed Time: '18000.000000'
2024-06-20 23:48:19 (1398517): Status Report: CPU Time: '52785.230000'
2024-06-21 00:00:09 (1398517): VM state change detected. (old = 'running', new = 'paused')
2024-06-21 00:00:29 (1398517): VM state change detected. (old = 'paused', new = 'running')
2024-06-21 01:27:41 (1398517): Status Report: Elapsed Time: '24000.000000'
2024-06-21 01:27:41 (1398517): Status Report: CPU Time: '72097.440000'
2024-06-21 03:04:16 (1398517): VM state change detected. (old = 'running', new = 'paused')
2024-06-21 03:04:37 (1398517): VM state change detected. (old = 'paused', new = 'running')
2024-06-21 03:07:03 (1398517): Status Report: Elapsed Time: '30000.000000'
2024-06-21 03:07:03 (1398517): Status Report: CPU Time: '91328.920000'
2024-06-21 04:23:26 (1398517): VM state change detected. (old = 'running', new = 'paused')
2024-06-21 04:23:47 (1398517): VM state change detected. (old = 'paused', new = 'running')
2024-06-21 04:46:25 (1398517): Status Report: Elapsed Time: '36000.000000'
2024-06-21 04:46:25 (1398517): Status Report: CPU Time: '110612.790000'
2024-06-21 06:13:45 (1398517): Guest Log:  *** Job finished ***
2024-06-21 06:13:45 (1398517): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-21 06:13:45 (1398517): Guest Log: 2024-06-21 04:12:23,969 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2024-06-21 06:13:45 (1398517): Guest Log: 2024-06-21 04:12:24,974 | INFO     | [job] queue monitor thread has finished
2024-06-21 06:13:45 (1398517): Guest Log: 2024-06-21 04:12:26,368 | INFO     | [data] queue_monitor thread has finished
2024-06-21 06:13:45 (1398517): Guest Log: 2024-06-21 04:12:27,395 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140011658618688)>', '<ExcThread(monitor, started 140011060045568)>']
2024-06-21 06:13:45 (1398517): Guest Log: 2024-06-21 04:12:28,411 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-21 06:13:45 (1398517): Guest Log: 2024-06-21 04:12:28,411 | INFO     | [monitor] control thread has ended
2024-06-21 06:13:45 (1398517): Guest Log: 2024-06-21 04:12:32,404 | INFO     | all workflow threads have been joined
2024-06-21 06:13:45 (1398517): Guest Log: 2024-06-21 04:12:32,405 | INFO     | end of generic workflow (traces error code: 0)
2024-06-21 06:13:45 (1398517): Guest Log: 2024-06-21 04:12:32,405 | INFO     | traces error code: 0
2024-06-21 06:13:45 (1398517): Guest Log: 2024-06-21 04:12:32,405 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-21 06:13:45 (1398517): Guest Log: 2024-06-21 04:12:32,518 [wrapper] ==== pilot stdout END ====
2024-06-21 06:13:45 (1398517): Guest Log: 2024-06-21 04:12:32,522 [wrapper] ==== wrapper stdout RESUME ====
2024-06-21 06:13:45 (1398517): Guest Log: 2024-06-21 04:12:32,526 [wrapper] pilotpid: 6515
2024-06-21 06:13:45 (1398517): Guest Log: 2024-06-21 04:12:32,529 [wrapper] Pilot exit status: 0
2024-06-21 06:13:45 (1398517): Guest Log: 2024-06-21 04:12:32,564 [wrapper] pandaids: 6237845576
2024-06-21 06:13:45 (1398517): Guest Log: 2024-06-21 04:12:32,588 [wrapper] cleanup supervisor_pilot 14394 6516
2024-06-21 06:13:45 (1398517): Guest Log: 2024-06-21 04:12:32,592 [wrapper] Test setup, not cleaning
2024-06-21 06:13:45 (1398517): Guest Log: 2024-06-21 04:12:32,595 [wrapper] ==== wrapper stdout END ====
2024-06-21 06:13:45 (1398517): Guest Log: 2024-06-21 04:12:32,599 [wrapper] ==== wrapper stderr END ====
2024-06-21 06:13:45 (1398517): Guest Log: 2024-06-21 04:12:32,606 [wrapper] apfmon messages muted
2024-06-21 06:13:45 (1398517): Guest Log:  *** Error codes and diagnostics ***
2024-06-21 06:13:45 (1398517): Guest Log:     "exeErrorCode": 0,
2024-06-21 06:13:45 (1398517): Guest Log:     "exeErrorDiag": "",
2024-06-21 06:13:45 (1398517): Guest Log:     "pilotErrorCode": 0,
2024-06-21 06:13:45 (1398517): Guest Log:     "pilotErrorDiag": "",
2024-06-21 06:13:45 (1398517): Guest Log:  *** Listing of results directory ***
2024-06-21 06:13:45 (1398517): Guest Log: total 353276
2024-06-21 06:13:45 (1398517): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 19 10:38 pilot3.tar.gz
2024-06-21 06:13:45 (1398517): Guest Log: -rwx------. 1 atlas atlas     32308 Jun 19 10:49 runpilot2-wrapper.sh
2024-06-21 06:13:45 (1398517): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 19 10:49 queuedata.json
2024-06-21 06:13:45 (1398517): Guest Log: -rw-r--r--. 1 atlas atlas    482537 Jun 20 16:51 input.tar.gz
2024-06-21 06:13:45 (1398517): Guest Log: -rw-r--r--. 1 atlas atlas     17537 Jun 20 16:51 start_atlas.sh
2024-06-21 06:13:45 (1398517): Guest Log: -rw-r--r--. 1 atlas atlas      6647 Jun 20 16:51 init_data.xml
2024-06-21 06:13:45 (1398517): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 20 16:51 EVNT.38776201._000788.pool.root.1 -> /data/./ATLAS.root_0
2024-06-21 06:13:45 (1398517): Guest Log: -rw-r--r--. 1 atlas atlas      2629 Jun 20 16:52 pandaJob.out
2024-06-21 06:13:45 (1398517): Guest Log: -rw-------. 1 atlas atlas       424 Jun 20 16:52 setup.sh.local
2024-06-21 06:13:45 (1398517): Guest Log: -rw-------. 1 atlas atlas   1020792 Jun 20 16:53 agis_schedconf.cvmfs.json
2024-06-21 06:13:45 (1398517): Guest Log: -rw-------. 1 atlas atlas   1321251 Jun 20 16:53 cric_ddmendpoints.json
2024-06-21 06:13:45 (1398517): Guest Log: drwx------. 4 atlas atlas      4096 Jun 20 16:53 pilot3
2024-06-21 06:13:45 (1398517): Guest Log: -rw-------. 1 atlas atlas 351388310 Jun 21 04:10 HITS.38921007._049326.pool.root.1
2024-06-21 06:13:45 (1398517): Guest Log: -rw-------. 1 atlas atlas      1028 Jun 21 04:11 memory_monitor_summary.json
2024-06-21 06:13:45 (1398517): Guest Log: -rw-------. 1 atlas atlas         0 Jun 21 04:11 agis_ddmendpoints.agis.ALL.json
2024-06-21 06:13:45 (1398517): Guest Log: -rw-------. 1 atlas atlas    531136 Jun 21 04:11 log.38921007._049326.job.log.tgz.1
2024-06-21 06:13:45 (1398517): Guest Log: -rw-------. 1 atlas atlas        95 Jun 21 04:11 pilot_heartbeat.json
2024-06-21 06:13:45 (1398517): Guest Log: -rw-------. 1 atlas atlas      7742 Jun 21 04:12 heartbeat.json
2024-06-21 06:13:45 (1398517): Guest Log: -rw-------. 1 atlas atlas      4457 Jun 21 04:12 pilotlog.txt
2024-06-21 06:13:45 (1398517): Guest Log: -rw-------. 1 atlas atlas   2916478 Jun 21 04:12 log.38921007._049326.job.log.1
2024-06-21 06:13:45 (1398517): Guest Log: -rw-------. 1 atlas atlas       357 Jun 21 04:12 output.list
2024-06-21 06:13:45 (1398517): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 21 04:12 runtime_log
2024-06-21 06:13:45 (1398517): Guest Log: -rw-------. 1 atlas atlas   3471360 Jun 21 04:12 result.tar.gz
2024-06-21 06:13:45 (1398517): Guest Log: -rw-r--r--. 1 atlas atlas     11015 Jun 21 04:12 runtime_log.err
2024-06-21 06:13:45 (1398517): Guest Log: -rw-------. 1 atlas atlas       676 Jun 21 04:12 EmNMDml37d5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDm61jKDmPUDgbn.diag
2024-06-21 06:13:45 (1398517): Guest Log: Looking for outputfile HITS.38921007._049326.pool.root.1
2024-06-21 06:13:45 (1398517): Guest Log: HITS file was successfully produced
2024-06-21 06:13:45 (1398517): Guest Log: -rw-------. 1 atlas atlas 351388310 Jun 21 04:10 /home/atlas/RunAtlas/HITS.38921007._049326.pool.root.1
2024-06-21 06:13:46 (1398517): Guest Log: Successfully finished the ATLAS job!
2024-06-21 06:13:46 (1398517): Guest Log: Copying the results back to the shared directory!
2024-06-21 06:13:46 (1398517): Guest Log:  *** Contents of shared directory: ***
2024-06-21 06:13:46 (1398517): Guest Log: total 573984
2024-06-21 06:13:46 (1398517): Guest Log: -rw-r--r--. 1 root root 583768687 Jun 20 16:50 ATLAS.root_0
2024-06-21 06:13:46 (1398517): Guest Log: -rw-r--r--. 1 root root      6647 Jun 20 16:50 init_data.xml
2024-06-21 06:13:46 (1398517): Guest Log: -rw-r--r--. 1 root root    482537 Jun 20 16:50 input.tar.gz
2024-06-21 06:13:46 (1398517): Guest Log: -rw-r--r--. 1 root root   3471360 Jun 21  2024 result.tar.gz
2024-06-21 06:13:46 (1398517): Guest Log: -rw-r--r--. 1 root root     17537 Jun 20 16:50 start_atlas.sh
2024-06-21 06:13:46 (1398517): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-21 06:13:46 (1398517): VM Completion File Detected.
2024-06-21 06:13:46 (1398517): Powering off VM.
2024-06-21 06:13:46 (1398517): Successfully stopped VM.
2024-06-21 06:13:46 (1398517): Deregistering VM. (boinc_36e4ddb4769309e2, slot#0)
2024-06-21 06:13:46 (1398517): Removing network bandwidth throttle group from VM.
2024-06-21 06:13:46 (1398517): Removing VM from VirtualBox.
06:13:51 (1398517): called boinc_finish(0)

</stderr_txt>
]]>

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