Stderr output

<core_client_version>8.0.3</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-19 07:36:59 (432194): Detected: vboxwrapper 26206
2024-06-19 07:36:59 (432194): Detected: BOINC client v8.0.3
2024-06-19 07:36:59 (432194): Detected: VirtualBox VboxManage Interface (Version: 7.0.16)
2024-06-19 07:36:59 (432194): Successfully copied 'init_data.xml' to the shared directory.
2024-06-19 07:36:59 (432194): Create VM. (boinc_2846f6dd63667370, slot#1)
2024-06-19 07:36:59 (432194): Setting Memory Size for VM. (4096MB)
2024-06-19 07:36:59 (432194): Setting CPU Count for VM. (1)
2024-06-19 07:36:59 (432194): Setting Chipset Options for VM.
2024-06-19 07:36:59 (432194): Setting Graphics Controller Options for VM.
2024-06-19 07:36:59 (432194): Setting Boot Options for VM.
2024-06-19 07:37:00 (432194): Setting Network Configuration for NAT.
2024-06-19 07:37:00 (432194): Enabling VM Network Access.
2024-06-19 07:37:00 (432194): Disabling USB Support for VM.
2024-06-19 07:37:00 (432194): Disabling COM Port Support for VM.
2024-06-19 07:37:00 (432194): Disabling LPT Port Support for VM.
2024-06-19 07:37:00 (432194): Disabling Audio Support for VM.
2024-06-19 07:37:00 (432194): Disabling Clipboard Support for VM.
2024-06-19 07:37:00 (432194): Disabling Drag and Drop Support for VM.
2024-06-19 07:37:00 (432194): Adding storage controller(s) to VM.
2024-06-19 07:37:00 (432194): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-19 07:37:01 (432194): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-19 07:37:01 (432194): forwarding host port 52869 to guest port 80
2024-06-19 07:37:01 (432194): Enabling remote desktop for VM.
2024-06-19 07:37:01 (432194): Enabling shared directory for VM.
2024-06-19 07:37:01 (432194): Starting VM using VBoxManage interface. (boinc_2846f6dd63667370, slot#1)
2024-06-19 07:37:02 (432194): Successfully started VM. (PID = '432582')
2024-06-19 07:37:02 (432194): Reporting VM Process ID to BOINC.
2024-06-19 07:37:02 (432194): Guest Log: BIOS: VirtualBox 7.0.16
2024-06-19 07:37:02 (432194): Guest Log: CPUID EDX: 0x178bfbff
2024-06-19 07:37:02 (432194): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-19 07:37:02 (432194): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-19 07:37:02 (432194): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-19 07:37:02 (432194): Detected: Web Application Enabled (http://localhost:52869)
2024-06-19 07:37:02 (432194): Detected: Remote Desktop Enabled (localhost:55359)
2024-06-19 07:37:02 (432194): Preference change detected
2024-06-19 07:37:02 (432194): Setting CPU throttle for VM. (100%)
2024-06-19 07:37:03 (432194): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-19 07:37:04 (432194): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-19 07:37:04 (432194): Guest Log: BIOS: Booting from Hard Disk...
2024-06-19 07:37:07 (432194): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-19 07:37:07 (432194): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-19 07:37:07 (432194): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-19 07:37:07 (432194): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-19 07:37:07 (432194): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-19 07:37:07 (432194): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-19 07:37:07 (432194): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-19 07:37:07 (432194): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-19 07:37:07 (432194): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-19 07:37:07 (432194): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-19 07:37:07 (432194): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-19 07:37:07 (432194): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-19 07:37:07 (432194): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-19 07:37:07 (432194): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-19 07:37:07 (432194): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-19 07:37:07 (432194): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-19 07:37:07 (432194): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-19 07:37:07 (432194): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-19 07:37:07 (432194): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-19 07:37:07 (432194): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-19 07:37:07 (432194): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-19 07:37:07 (432194): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-19 07:37:07 (432194): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-19 07:37:07 (432194): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-19 07:37:07 (432194): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-19 07:37:07 (432194): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-19 07:37:07 (432194): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-19 07:37:07 (432194): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-19 07:37:07 (432194): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-19 07:37:07 (432194): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-19 07:37:07 (432194): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-19 07:37:07 (432194): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-19 07:37:13 (432194): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-19 07:37:13 (432194): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-19 07:37:26 (432194): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-19 07:37:26 (432194): Guest Log: 00:00:00.000257 main     Log opened 2024-06-19T05:37:24.762508000Z
2024-06-19 07:37:26 (432194): Guest Log: 00:00:00.000471 main     OS Product: Linux
2024-06-19 07:37:26 (432194): Guest Log: 00:00:00.000547 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-19 07:37:26 (432194): Guest Log: 00:00:00.000611 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-19 07:37:26 (432194): Guest Log: 00:00:00.000675 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-19 07:37:26 (432194): Guest Log: 00:00:00.000676 main     Process ID: 1235
2024-06-19 07:37:26 (432194): Guest Log: 00:00:00.000677 main     Package type: LINUX_64BITS_GENERIC
2024-06-19 07:37:26 (432194): Guest Log: 00:00:00.003051 main     5.2.32 r132073 started. Verbose level = 0
2024-06-19 07:37:26 (432194): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-19 07:37:26 (432194): Guest Log: [INFO] Mounting shared directory
2024-06-19 07:37:26 (432194): Guest Log: [INFO] Checking for init_data.xml
2024-06-19 07:38:45 (432194): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-19 07:38:45 (432194): Guest Log: [INFO] Detected branch: prod
2024-06-19 07:38:46 (432194): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-19 07:38:46 (432194): Guest Log: Copying input files
2024-06-19 07:38:51 (432194): Guest Log: Copied input files into RunAtlas.
2024-06-19 07:38:51 (432194): Guest Log: Detected user-configured HTTP proxy at http://localhost:3128 - will set in /etc/cvmfs/default.local
2024-06-19 07:39:04 (432194): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-19 07:39:04 (432194): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-19 07:39:04 (432194): Guest Log: 2.6.3.0 1524 0 29524 134040 4 1 3117205 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.161.84:3126 1
2024-06-19 07:39:05 (432194): Guest Log: copied the webapp to /var/www
2024-06-19 07:39:05 (432194): Guest Log: core_number=1
2024-06-19 07:39:05 (432194): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-19 07:39:05 (432194): Guest Log:  *** Starting ATLAS job. (PandaID=6237152364 taskID=38920995) ***
2024-06-19 09:16:03 (432194): Status Report: Elapsed Time: '6000.000000'
2024-06-19 09:16:03 (432194): Status Report: CPU Time: '5193.610000'
2024-06-19 10:55:04 (432194): Status Report: Elapsed Time: '12000.000000'
2024-06-19 10:55:04 (432194): Status Report: CPU Time: '11132.840000'
2024-06-19 12:34:04 (432194): Status Report: Elapsed Time: '18000.000000'
2024-06-19 12:34:04 (432194): Status Report: CPU Time: '17075.460000'
2024-06-19 14:13:05 (432194): Status Report: Elapsed Time: '24000.000000'
2024-06-19 14:13:05 (432194): Status Report: CPU Time: '23023.310000'
2024-06-19 15:52:05 (432194): Status Report: Elapsed Time: '30000.000000'
2024-06-19 15:52:05 (432194): Status Report: CPU Time: '28961.950000'
2024-06-19 17:31:06 (432194): Status Report: Elapsed Time: '36000.000000'
2024-06-19 17:31:06 (432194): Status Report: CPU Time: '34910.490000'
2024-06-19 19:10:07 (432194): Status Report: Elapsed Time: '42000.000000'
2024-06-19 19:10:07 (432194): Status Report: CPU Time: '40859.170000'
2024-06-19 20:49:07 (432194): Status Report: Elapsed Time: '48000.000000'
2024-06-19 20:49:07 (432194): Status Report: CPU Time: '46807.020000'
2024-06-19 22:28:08 (432194): Status Report: Elapsed Time: '54000.000000'
2024-06-19 22:28:08 (432194): Status Report: CPU Time: '52754.770000'
2024-06-20 00:07:08 (432194): Status Report: Elapsed Time: '60000.000000'
2024-06-20 00:07:08 (432194): Status Report: CPU Time: '58703.140000'
2024-06-20 01:46:09 (432194): Status Report: Elapsed Time: '66000.000000'
2024-06-20 01:46:09 (432194): Status Report: CPU Time: '64650.870000'
2024-06-20 03:25:10 (432194): Status Report: Elapsed Time: '72000.000000'
2024-06-20 03:25:10 (432194): Status Report: CPU Time: '70598.630000'
2024-06-20 05:04:10 (432194): Status Report: Elapsed Time: '78000.000000'
2024-06-20 05:04:10 (432194): Status Report: CPU Time: '76544.910000'
2024-06-20 06:43:11 (432194): Status Report: Elapsed Time: '84000.000000'
2024-06-20 06:43:11 (432194): Status Report: CPU Time: '82493.420000'
2024-06-20 08:22:11 (432194): Status Report: Elapsed Time: '90000.000000'
2024-06-20 08:22:11 (432194): Status Report: CPU Time: '88441.210000'
2024-06-20 10:01:12 (432194): Status Report: Elapsed Time: '96000.000000'
2024-06-20 10:01:12 (432194): Status Report: CPU Time: '94388.990000'
2024-06-20 11:40:13 (432194): Status Report: Elapsed Time: '102000.000000'
2024-06-20 11:40:13 (432194): Status Report: CPU Time: '100337.480000'
2024-06-20 13:18:51 (432194): Guest Log:  *** Job finished ***
2024-06-20 13:18:51 (432194): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-20 13:18:51 (432194): Guest Log: 2024-06-20 11:18:40,068 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2024-06-20 13:18:51 (432194): Guest Log: 2024-06-20 11:18:41,069 | INFO     | [job] queue monitor thread has finished
2024-06-20 13:18:51 (432194): Guest Log: 2024-06-20 11:18:41,744 | INFO     | [data] queue_monitor thread has finished
2024-06-20 13:18:51 (432194): Guest Log: 2024-06-20 11:18:43,830 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140632174552896)>', '<ExcThread(monitor, started 140631515064064)>']
2024-06-20 13:18:51 (432194): Guest Log: 2024-06-20 11:18:44,748 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-20 13:18:51 (432194): Guest Log: 2024-06-20 11:18:44,749 | INFO     | [monitor] control thread has ended
2024-06-20 13:18:51 (432194): Guest Log: 2024-06-20 11:18:48,836 | INFO     | all workflow threads have been joined
2024-06-20 13:18:51 (432194): Guest Log: 2024-06-20 11:18:48,836 | INFO     | end of generic workflow (traces error code: 0)
2024-06-20 13:18:51 (432194): Guest Log: 2024-06-20 11:18:48,837 | INFO     | traces error code: 0
2024-06-20 13:18:51 (432194): Guest Log: 2024-06-20 11:18:48,837 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-20 13:18:51 (432194): Guest Log: 2024-06-20 11:18:48,958 [wrapper] ==== pilot stdout END ====
2024-06-20 13:18:51 (432194): Guest Log: 2024-06-20 11:18:48,963 [wrapper] ==== wrapper stdout RESUME ====
2024-06-20 13:18:51 (432194): Guest Log: 2024-06-20 11:18:48,968 [wrapper] pilotpid: 6358
2024-06-20 13:18:51 (432194): Guest Log: 2024-06-20 11:18:48,973 [wrapper] Pilot exit status: 0
2024-06-20 13:18:51 (432194): Guest Log: 2024-06-20 11:18:51,115 [wrapper] pandaids: 6237152364
2024-06-20 13:18:51 (432194): Guest Log: 2024-06-20 11:18:51,145 [wrapper] cleanup supervisor_pilot 13872 6359
2024-06-20 13:18:51 (432194): Guest Log: 2024-06-20 11:18:51,150 [wrapper] Test setup, not cleaning
2024-06-20 13:18:51 (432194): Guest Log: 2024-06-20 11:18:51,156 [wrapper] ==== wrapper stdout END ====
2024-06-20 13:18:51 (432194): Guest Log: 2024-06-20 11:18:51,160 [wrapper] ==== wrapper stderr END ====
2024-06-20 13:18:51 (432194): Guest Log: 2024-06-20 11:18:51,170 [wrapper] apfmon messages muted
2024-06-20 13:18:51 (432194): Guest Log:  *** Error codes and diagnostics ***
2024-06-20 13:18:51 (432194): Guest Log:     "exeErrorCode": 0,
2024-06-20 13:18:51 (432194): Guest Log:     "exeErrorDiag": "",
2024-06-20 13:18:51 (432194): Guest Log:     "pilotErrorCode": 0,
2024-06-20 13:18:51 (432194): Guest Log:     "pilotErrorDiag": "",
2024-06-20 13:18:51 (432194): Guest Log:  *** Listing of results directory ***
2024-06-20 13:18:51 (432194): Guest Log: total 393920
2024-06-20 13:18:51 (432194): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 18 23:44 pilot3.tar.gz
2024-06-20 13:18:51 (432194): Guest Log: -rwx------. 1 atlas atlas     32308 Jun 18 23:54 runpilot2-wrapper.sh
2024-06-20 13:18:51 (432194): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 18 23:54 queuedata.json
2024-06-20 13:18:51 (432194): Guest Log: -rw-r--r--. 1 atlas atlas      9682 Jun 19 05:38 init_data.xml
2024-06-20 13:18:51 (432194): Guest Log: -rw-r--r--. 1 atlas atlas    482523 Jun 19 05:38 input.tar.gz
2024-06-20 13:18:51 (432194): Guest Log: -rw-r--r--. 1 atlas atlas     17537 Jun 19 05:38 start_atlas.sh
2024-06-20 13:18:51 (432194): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 19 05:38 EVNT.38776180._000876.pool.root.1 -> /data/./ATLAS.root_0
2024-06-20 13:18:51 (432194): Guest Log: -rw-r--r--. 1 atlas atlas      2615 Jun 19 05:39 pandaJob.out
2024-06-20 13:18:51 (432194): Guest Log: -rw-------. 1 atlas atlas       456 Jun 19 05:39 setup.sh.local
2024-06-20 13:18:51 (432194): Guest Log: -rw-------. 1 atlas atlas   1020814 Jun 19 05:40 agis_schedconf.cvmfs.json
2024-06-20 13:18:51 (432194): Guest Log: -rw-------. 1 atlas atlas   1317943 Jun 19 05:40 cric_ddmendpoints.json
2024-06-20 13:18:51 (432194): Guest Log: drwx------. 4 atlas atlas      4096 Jun 19 05:40 pilot3
2024-06-20 13:18:51 (432194): Guest Log: -rw-------. 1 atlas atlas 360716109 Jun 20 11:16 HITS.38920995._055975.pool.root.1
2024-06-20 13:18:51 (432194): Guest Log: -rw-------. 1 atlas atlas      1023 Jun 20 11:17 memory_monitor_summary.json
2024-06-20 13:18:51 (432194): Guest Log: -rw-------. 1 atlas atlas         0 Jun 20 11:17 agis_ddmendpoints.agis.ALL.json
2024-06-20 13:18:51 (432194): Guest Log: -rw-------. 1 atlas atlas   2149007 Jun 20 11:17 log.38920995._055975.job.log.tgz.1
2024-06-20 13:18:51 (432194): Guest Log: -rw-------. 1 atlas atlas        95 Jun 20 11:18 pilot_heartbeat.json
2024-06-20 13:18:51 (432194): Guest Log: -rw-------. 1 atlas atlas      7736 Jun 20 11:18 heartbeat.json
2024-06-20 13:18:51 (432194): Guest Log: -rw-------. 1 atlas atlas      4394 Jun 20 11:18 pilotlog.txt
2024-06-20 13:18:51 (432194): Guest Log: -rw-------. 1 atlas atlas  17448071 Jun 20 11:18 log.38920995._055975.job.log.1
2024-06-20 13:18:51 (432194): Guest Log: -rw-------. 1 atlas atlas       357 Jun 20 11:18 output.list
2024-06-20 13:18:51 (432194): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 20 11:18 runtime_log
2024-06-20 13:18:51 (432194): Guest Log: -rw-------. 1 atlas atlas  19619840 Jun 20 11:18 result.tar.gz
2024-06-20 13:18:51 (432194): Guest Log: -rw-r--r--. 1 atlas atlas     11144 Jun 20 11:18 runtime_log.err
2024-06-20 13:18:51 (432194): Guest Log: -rw-------. 1 atlas atlas       650 Jun 20 11:18 plFNDmBqxd5n9Rq4apOajLDm4fhM0noT9bVo2ijZDmbRWKDmFnmJkm.diag
2024-06-20 13:18:51 (432194): Guest Log: Looking for outputfile HITS.38920995._055975.pool.root.1
2024-06-20 13:18:51 (432194): Guest Log: HITS file was successfully produced
2024-06-20 13:18:51 (432194): Guest Log: -rw-------. 1 atlas atlas 360716109 Jun 20 11:16 /home/atlas/RunAtlas/HITS.38920995._055975.pool.root.1
2024-06-20 13:18:51 (432194): Guest Log: Successfully finished the ATLAS job!
2024-06-20 13:18:51 (432194): Guest Log: Copying the results back to the shared directory!
2024-06-20 13:18:52 (432194): Guest Log:  *** Contents of shared directory: ***
2024-06-20 13:18:52 (432194): Guest Log: total 640400
2024-06-20 13:18:52 (432194): Guest Log: -rw-r--r--. 1 root root 635626443 Jun 19 05:36 ATLAS.root_0
2024-06-20 13:18:52 (432194): Guest Log: -rw-r--r--. 1 root root      9682 Jun 19 05:36 init_data.xml
2024-06-20 13:18:52 (432194): Guest Log: -rw-r--r--. 1 root root    482523 Jun 19 05:36 input.tar.gz
2024-06-20 13:18:52 (432194): Guest Log: -rw-r--r--. 1 root root  19619840 Jun 20  2024 result.tar.gz
2024-06-20 13:18:52 (432194): Guest Log: -rw-r--r--. 1 root root     17537 Jun 19 05:36 start_atlas.sh
2024-06-20 13:18:52 (432194): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-20 13:18:52 (432194): VM Completion File Detected.
2024-06-20 13:18:52 (432194): Powering off VM.
2024-06-20 13:18:53 (432194): Successfully stopped VM.
2024-06-20 13:18:53 (432194): Deregistering VM. (boinc_2846f6dd63667370, slot#1)
2024-06-20 13:18:53 (432194): Removing network bandwidth throttle group from VM.
2024-06-20 13:18:53 (432194): Removing VM from VirtualBox.
13:18:58 (432194): called boinc_finish(0)

</stderr_txt>
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