Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:33:57 (5919): wrapper (7.7.26015): starting
01:33:57 (5919): wrapper: running run_atlas (--nthreads 8)
[2024-06-19 01:33:57] Arguments: --nthreads 8
[2024-06-19 01:33:57] Threads: 8
[2024-06-19 01:33:57] Checking for CVMFS
[2024-06-19 01:33:58] Probing /cvmfs/atlas.cern.ch... OK
[2024-06-19 01:33:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-06-19 01:33:58] Running cvmfs_config stat atlas.cern.ch
[2024-06-19 01:33:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-06-19 01:33:59] 2.11.2.0 84859 10626 119272 134040 3 308 16748153 18432001 20023 130560 0 73664577 99.375 86325479 52836 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2024-06-19 01:33:59] CVMFS is ok
[2024-06-19 01:33:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-19 01:33:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-19 01:33:59] Further information can be found at the LHC@home message board.
[2024-06-19 01:33:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-19 01:33:59] Checking for apptainer binary...
[2024-06-19 01:33:59] Using apptainer found in PATH at /usr/bin/apptainer
[2024-06-19 01:33:59] Running /usr/bin/apptainer --version
[2024-06-19 01:33:59] apptainer version 1.3.1-1.el7
[2024-06-19 01:33:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-19 01:34:06] c-212-2.aglt2.org
[2024-06-19 01:34:06] apptainer works
[2024-06-19 01:34:07] Set ATHENA_PROC_NUMBER=8
[2024-06-19 01:34:07] Set ATHENA_CORE_NUMBER=8
[2024-06-19 01:34:07] Starting ATLAS job with PandaID=6237139222
[2024-06-19 01:34:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-19 16:07:39]  *** The last 200 lines of the pilot log: ***
[2024-06-19 16:07:39] 2024-06-19 20:07:03,569 | INFO     | monitor loop #3584: job 0:6237139222 is in state 'finished'
[2024-06-19 16:07:39] 2024-06-19 20:07:03,569 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-06-19 16:07:39] 2024-06-19 20:07:06,074 | INFO     | monitor loop #3585: job 0:6237139222 is in state 'finished'
[2024-06-19 16:07:39] 2024-06-19 20:07:06,074 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-06-19 16:07:39] 2024-06-19 20:07:08,602 | INFO     | monitor loop #3586: job 0:6237139222 is in state 'finished'
[2024-06-19 16:07:39] 2024-06-19 20:07:08,602 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-06-19 16:07:39] 2024-06-19 20:07:11,107 | INFO     | monitor loop #3587: job 0:6237139222 is in state 'finished'
[2024-06-19 16:07:39] 2024-06-19 20:07:11,111 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-06-19 16:07:39] 2024-06-19 20:07:13,616 | INFO     | monitor loop #3588: job 0:6237139222 is in state 'finished'
[2024-06-19 16:07:39] 2024-06-19 20:07:13,616 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-06-19 16:07:39] 2024-06-19 20:07:16,129 | INFO     | monitor loop #3589: job 0:6237139222 is in state 'finished'
[2024-06-19 16:07:39] 2024-06-19 20:07:16,129 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-06-19 16:07:39] 2024-06-19 20:07:17,699 | INFO     | CPU arch script returned: x86-64-v3
[2024-06-19 16:07:39] 2024-06-19 20:07:17,699 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6237139222/memory_monitor_summary.json (trf name=prmon)
[2024-06-19 16:07:39] 2024-06-19 20:07:17,704 | INFO     | extracted standard info from prmon json
[2024-06-19 16:07:39] 2024-06-19 20:07:17,704 | INFO     | extracted standard memory fields from prmon json
[2024-06-19 16:07:39] 2024-06-19 20:07:17,704 | WARNING  | GPU info not found in prmon json
[2024-06-19 16:07:39] 2024-06-19 20:07:17,704 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-06-19 16:07:39] 2024-06-19 20:07:17,704 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-06-19 16:07:39] 2024-06-19 20:07:17,744 | INFO     | fitting pss+swap vs Time
[2024-06-19 16:07:39] 2024-06-19 20:07:17,745 | INFO     | model: linear, x: [1718775665.0, 1718775726.0, 1718775787.0, 1718775848.0, 1718775909.0, 1718775970.0, 1718776031.0, 1718776092.0, 1718776153.0, 1718776214.0, 1718
[2024-06-19 16:07:39] 2024-06-19 20:07:17,746 | INFO     | sum of square deviations: 191103264217.5135
[2024-06-19 16:07:39] 2024-06-19 20:07:17,783 | INFO     | sum of deviations: 1755561042383.6228
[2024-06-19 16:07:39] 2024-06-19 20:07:17,783 | INFO     | mean x: 1718801590.054054
[2024-06-19 16:07:39] 2024-06-19 20:07:17,784 | INFO     | mean y: 2457634.1386603997
[2024-06-19 16:07:39] 2024-06-19 20:07:17,784 | INFO     | -- intersect: -15787231377.407753
[2024-06-19 16:07:39] 2024-06-19 20:07:17,784 | INFO     | intersect: -15787231377.407753
[2024-06-19 16:07:39] 2024-06-19 20:07:17,788 | INFO     | chi2: 18.390414855885584
[2024-06-19 16:07:39] 2024-06-19 20:07:17,789 | INFO     | model: linear, x: [1718775665.0, 1718775726.0, 1718775787.0, 1718775848.0, 1718775909.0, 1718775970.0, 1718776031.0, 1718776092.0, 1718776153.0, 1718776214.0, 1718
[2024-06-19 16:07:39] 2024-06-19 20:07:17,790 | INFO     | sum of square deviations: 187754540537.10657
[2024-06-19 16:07:39] 2024-06-19 20:07:17,823 | INFO     | sum of deviations: 1862452129842.871
[2024-06-19 16:07:39] 2024-06-19 20:07:17,824 | INFO     | mean x: 1718801437.5531914
[2024-06-19 16:07:39] 2024-06-19 20:07:17,824 | INFO     | mean y: 2462482.8806146574
[2024-06-19 16:07:39] 2024-06-19 20:07:17,824 | INFO     | -- intersect: -17047380301.162569
[2024-06-19 16:07:39] 2024-06-19 20:07:17,824 | INFO     | intersect: -17047380301.162569
[2024-06-19 16:07:39] 2024-06-19 20:07:17,824 | INFO     | chi2: 16.80676827993062
[2024-06-19 16:07:39] 2024-06-19 20:07:17,825 | INFO     | current chi2=16.80676827993062 (change=8.611260748411787 %)
[2024-06-19 16:07:39] 2024-06-19 20:07:17,825 | INFO     | right removable region: 845
[2024-06-19 16:07:39] 2024-06-19 20:07:17,825 | INFO     | model: linear, x: [1718775970.0, 1718776031.0, 1718776092.0, 1718776153.0, 1718776214.0, 1718776275.0, 1718776336.0, 1718776397.0, 1718776458.0, 1718776519.0, 1718
[2024-06-19 16:07:39] 2024-06-19 20:07:17,826 | INFO     | sum of square deviations: 187754564144.99878
[2024-06-19 16:07:39] 2024-06-19 20:07:17,850 | INFO     | sum of deviations: 1477559042000.2205
[2024-06-19 16:07:39] 2024-06-19 20:07:17,854 | INFO     | mean x: 1718801742.5543735
[2024-06-19 16:07:39] 2024-06-19 20:07:17,854 | INFO     | mean y: 2470291.4408983453
[2024-06-19 16:07:39] 2024-06-19 20:07:17,854 | INFO     | -- intersect: -13523864302.245184
[2024-06-19 16:07:39] 2024-06-19 20:07:17,854 | INFO     | intersect: -13523864302.245184
[2024-06-19 16:07:39] 2024-06-19 20:07:17,855 | INFO     | chi2: 14.259198715326743
[2024-06-19 16:07:39] 2024-06-19 20:07:17,855 | INFO     | current chi2=14.259198715326743 (change=22.463963825354956 %)
[2024-06-19 16:07:39] 2024-06-19 20:07:17,855 | INFO     | left removable region: 10
[2024-06-19 16:07:39] 2024-06-19 20:07:17,856 | INFO     | model: linear, x: [1718776275.0, 1718776336.0, 1718776397.0, 1718776458.0, 1718776519.0, 1718776580.0, 1718776641.0, 1718776702.0, 1718776763.0, 1718776824.0, 1718
[2024-06-19 16:07:39] 2024-06-19 20:07:17,856 | INFO     | sum of square deviations: 180525589594.57523
[2024-06-19 16:07:39] 2024-06-19 20:07:17,879 | INFO     | sum of deviations: 1385445977765.8374
[2024-06-19 16:07:39] 2024-06-19 20:07:17,880 | INFO     | mean x: 1718801712.0538921
[2024-06-19 16:07:39] 2024-06-19 20:07:17,880 | INFO     | mean y: 2484375.6035928144
[2024-06-19 16:07:39] 2024-06-19 20:07:17,880 | INFO     | -- intersect: -13188481646.942266
[2024-06-19 16:07:39] 2024-06-19 20:07:17,880 | INFO     | intersect: -13188481646.942266
[2024-06-19 16:07:39] 2024-06-19 20:07:17,881 | INFO     | chi2: 10.666301879230618
[2024-06-19 16:07:39] 2024-06-19 20:07:17,881 | INFO     | -- intersect: -13188481646.942266
[2024-06-19 16:07:39] 2024-06-19 20:07:17,881 | INFO     | current memory leak: 7.67 B/s (using 835 data points, chi2=10.67)
[2024-06-19 16:07:39] 2024-06-19 20:07:17,890 | INFO     | ..............................
[2024-06-19 16:07:39] 2024-06-19 20:07:17,890 | INFO     | . Timing measurements:
[2024-06-19 16:07:39] 2024-06-19 20:07:17,890 | INFO     | . get job = 0 s
[2024-06-19 16:07:39] 2024-06-19 20:07:17,890 | INFO     | . initial setup = 8 s
[2024-06-19 16:07:39] 2024-06-19 20:07:17,890 | INFO     | . payload setup = 92 s
[2024-06-19 16:07:39] 2024-06-19 20:07:17,891 | INFO     | . stage-in = 0 s
[2024-06-19 16:07:39] 2024-06-19 20:07:17,891 | INFO     | . payload execution = 51978 s
[2024-06-19 16:07:39] 2024-06-19 20:07:17,891 | INFO     | . stage-out = 6 s
[2024-06-19 16:07:39] 2024-06-19 20:07:17,891 | INFO     | . log creation = 1 s
[2024-06-19 16:07:39] 2024-06-19 20:07:17,891 | INFO     | ..............................
[2024-06-19 16:07:39] 2024-06-19 20:07:18,209 | INFO     | 
[2024-06-19 16:07:39] 2024-06-19 20:07:18,209 | INFO     | job summary report
[2024-06-19 16:07:39] 2024-06-19 20:07:18,209 | INFO     | --------------------------------------------------
[2024-06-19 16:07:39] 2024-06-19 20:07:18,209 | INFO     | PanDA job id: 6237139222
[2024-06-19 16:07:39] 2024-06-19 20:07:18,209 | INFO     | task id: 38921013
[2024-06-19 16:07:39] 2024-06-19 20:07:18,209 | INFO     | errors: (none)
[2024-06-19 16:07:39] 2024-06-19 20:07:18,210 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-19 16:07:39] 2024-06-19 20:07:18,210 | INFO     | pilot state: finished 
[2024-06-19 16:07:39] 2024-06-19 20:07:18,210 | INFO     | transexitcode: 0
[2024-06-19 16:07:39] 2024-06-19 20:07:18,210 | INFO     | exeerrorcode: 0
[2024-06-19 16:07:39] 2024-06-19 20:07:18,210 | INFO     | exeerrordiag: 
[2024-06-19 16:07:39] 2024-06-19 20:07:18,210 | INFO     | exitcode: 0
[2024-06-19 16:07:39] 2024-06-19 20:07:18,210 | INFO     | exitmsg: OK
[2024-06-19 16:07:39] 2024-06-19 20:07:18,210 | INFO     | cpuconsumptiontime: 142211 s
[2024-06-19 16:07:39] 2024-06-19 20:07:18,210 | INFO     | nevents: 400
[2024-06-19 16:07:39] 2024-06-19 20:07:18,210 | INFO     | neventsw: 0
[2024-06-19 16:07:39] 2024-06-19 20:07:18,210 | INFO     | pid: 5011
[2024-06-19 16:07:39] 2024-06-19 20:07:18,210 | INFO     | pgrp: 5011
[2024-06-19 16:07:39] 2024-06-19 20:07:18,210 | INFO     | corecount: 8
[2024-06-19 16:07:39] 2024-06-19 20:07:18,210 | INFO     | event service: False
[2024-06-19 16:07:39] 2024-06-19 20:07:18,210 | INFO     | sizes: {0: 2381079, 1: 2381278, 11: 2381278, 22: 2381306, 33: 2381334, 44: 2381362, 53: 2381724, 55: 2381752, 52076: 2429122, 52083: 2438138, 52146: 2438252}
[2024-06-19 16:07:39] 2024-06-19 20:07:18,210 | INFO     | --------------------------------------------------
[2024-06-19 16:07:39] 2024-06-19 20:07:18,211 | INFO     | 
[2024-06-19 16:07:39] 2024-06-19 20:07:18,211 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2024-06-19 16:07:39] 2024-06-19 20:07:18,435 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-19 16:07:39] 2024-06-19 20:07:18,436 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-19 16:07:39] 2024-06-19 20:07:18,436 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-19 16:07:39] 2024-06-19 20:07:18,436 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-19 16:07:39] 2024-06-19 20:07:18,436 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-19 16:07:39] 2024-06-19 20:07:18,436 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-19 16:07:39] 2024-06-19 20:07:18,436 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-19 16:07:39] 2024-06-19 20:07:18,436 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-19 16:07:39] 2024-06-19 20:07:18,436 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-19 16:07:39] 2024-06-19 20:07:18,436 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-19 16:07:39] 2024-06-19 20:07:18,436 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-19 16:07:39] 2024-06-19 20:07:18,436 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-19 16:07:39] 2024-06-19 20:07:18,436 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-19 16:07:39] 2024-06-19 20:07:18,436 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-19 16:07:39] 2024-06-19 20:07:18,437 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-19 16:07:39] 2024-06-19 20:07:18,437 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-19 16:07:39] 2024-06-19 20:07:18,437 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-19 16:07:39] 2024-06-19 20:07:18,437 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-19 16:07:39] 2024-06-19 20:07:18,437 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-19 16:07:39] 2024-06-19 20:07:18,437 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-19 16:07:39] 2024-06-19 20:07:18,437 | INFO     | job 6237139222 has completed (purged errors)
[2024-06-19 16:07:39] 2024-06-19 20:07:18,437 | INFO     | overall cleanup function is called
[2024-06-19 16:07:39] 2024-06-19 20:07:19,450 | INFO     | --- collectZombieJob: --- 10, [5011]
[2024-06-19 16:07:39] 2024-06-19 20:07:19,450 | INFO     | zombie collector waiting for pid 5011
[2024-06-19 16:07:39] 2024-06-19 20:07:19,450 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-19 16:07:39] 2024-06-19 20:07:20,472 | INFO     | collected zombie processes
[2024-06-19 16:07:39] 2024-06-19 20:07:20,472 | INFO     | will now attempt to kill all subprocesses of pid=5011
[2024-06-19 16:07:39] 2024-06-19 20:07:21,531 | INFO     | process IDs to be killed: [5011] (in reverse order)
[2024-06-19 16:07:39] 2024-06-19 20:07:22,613 | WARNING  | found no corresponding commands to process id(s)
[2024-06-19 16:07:39] 2024-06-19 20:07:22,614 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-19 16:07:39] 2024-06-19 20:07:22,637 | INFO     | did not find any defunct processes belonging to 5011
[2024-06-19 16:07:39] 2024-06-19 20:07:22,660 | INFO     | did not find any defunct processes belonging to 5011
[2024-06-19 16:07:39] 2024-06-19 20:07:22,661 | INFO     | ready for new job
[2024-06-19 16:07:39] 2024-06-19 20:07:22,661 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-19 16:07:39] 2024-06-19 20:07:22,667 | INFO     | *************************************
[2024-06-19 16:07:39] 2024-06-19 20:07:22,667 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-19 16:07:39] 2024-06-19 20:07:22,667 | INFO     | *************************************
[2024-06-19 16:07:39] 2024-06-19 20:07:22,667 | INFO     | 
[2024-06-19 16:07:39] 2024-06-19 20:07:22,675 | INFO     | architecture information:
[2024-06-19 16:07:39] 2024-06-19 20:07:22,682 | INFO     | executing command: cat /etc/os-release
[2024-06-19 16:07:39] 2024-06-19 20:07:22,834 | INFO     | cat /etc/os-release:
[2024-06-19 16:07:39] NAME="CentOS Linux"
[2024-06-19 16:07:39] VERSION="7 (Core)"
[2024-06-19 16:07:39] ID="centos"
[2024-06-19 16:07:39] ID_LIKE="rhel fedora"
[2024-06-19 16:07:39] VERSION_ID="7"
[2024-06-19 16:07:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-19 16:07:39] ANSI_COLOR="0;31"
[2024-06-19 16:07:39] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-19 16:07:39] HOME_URL="https://www.centos.org/"
[2024-06-19 16:07:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-19 16:07:39] 
[2024-06-19 16:07:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-19 16:07:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-19 16:07:39] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-19 16:07:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-19 16:07:39] 
[2024-06-19 16:07:39] 2024-06-19 20:07:22,835 | INFO     | *************************************
[2024-06-19 16:07:39] 2024-06-19 20:07:23,338 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2024-06-19 16:07:39] 2024-06-19 20:07:23,586 | INFO     | sufficient remaining disk space (99143909376 B)
[2024-06-19 16:07:39] 2024-06-19 20:07:23,590 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-19 16:07:39] 2024-06-19 20:07:23,593 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-19 16:07:39] 2024-06-19 20:07:23,595 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-19 16:07:39] 2024-06-19 20:07:23,599 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-19 16:07:39] 2024-06-19 20:07:23,716 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-06-19 16:07:39] 2024-06-19 20:07:23,716 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-06-19 16:07:39] 2024-06-19 20:07:23,717 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-19 16:07:39] 2024-06-19 20:07:23,717 | INFO     | will abort loop
[2024-06-19 16:07:39] 2024-06-19 20:07:23,895 | INFO     | found 0 job(s) in 20 queues
[2024-06-19 16:07:39] 2024-06-19 20:07:23,896 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-19 16:07:39] 2024-06-19 20:07:23,896 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-19 16:07:39] 2024-06-19 20:07:23,974 | INFO     | all data control threads have been joined
[2024-06-19 16:07:39] 2024-06-19 20:07:24,278 | INFO     | all payload control threads have been joined
[2024-06-19 16:07:39] 2024-06-19 20:07:24,611 | INFO     | [job] retrieve thread has finished
[2024-06-19 16:07:39] 2024-06-19 20:07:24,615 | INFO     | [job] queue monitor thread has finished
[2024-06-19 16:07:39] 2024-06-19 20:07:24,655 | INFO     | [payload] validate_post thread has finished
[2024-06-19 16:07:39] 2024-06-19 20:07:24,682 | INFO     | [payload] validate_pre thread has finished
[2024-06-19 16:07:39] 2024-06-19 20:07:24,704 | INFO     | [payload] failed_post thread has finished
[2024-06-19 16:07:39] 2024-06-19 20:07:24,722 | INFO     | [job] job monitor thread has finished
[2024-06-19 16:07:39] 2024-06-19 20:07:24,782 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-19 16:07:39] 2024-06-19 20:07:24,865 | INFO     | [payload] execute_payloads thread has finished
[2024-06-19 16:07:39] 2024-06-19 20:07:24,867 | INFO     | [job] create_data_payload thread has finished
[2024-06-19 16:07:39] 2024-06-19 20:07:24,868 | INFO     | [job] validate thread has finished
[2024-06-19 16:07:39] 2024-06-19 20:07:24,902 | INFO     | [data] copytool_in thread has finished
[2024-06-19 16:07:39] 2024-06-19 20:07:24,979 | INFO     | [data] control thread has finished
[2024-06-19 16:07:39] 2024-06-19 20:07:25,008 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-19 16:07:39] 2024-06-19 20:07:25,271 | INFO     | all job control threads have been joined
[2024-06-19 16:07:39] 2024-06-19 20:07:25,289 | INFO     | [payload] control thread has finished
[2024-06-19 16:07:39] 2024-06-19 20:07:25,607 | INFO     | [data] copytool_out thread has finished
[2024-06-19 16:07:39] 2024-06-19 20:07:26,277 | INFO     | [job] control thread has finished
[2024-06-19 16:07:39] 2024-06-19 20:07:29,022 | INFO     | [data] queue_monitor thread has finished
[2024-06-19 16:07:39] 2024-06-19 20:07:30,143 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140444148713280)>', '<ExcThread(monitor, started 140443853502208)>']
[2024-06-19 16:07:39] 2024-06-19 20:07:30,939 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-19 16:07:39] 2024-06-19 20:07:30,939 | INFO     | [monitor] control thread has ended
[2024-06-19 16:07:39] 2024-06-19 20:07:35,169 | INFO     | all workflow threads have been joined
[2024-06-19 16:07:39] 2024-06-19 20:07:35,169 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-19 16:07:39] 2024-06-19 20:07:35,170 | INFO     | traces error code: 0
[2024-06-19 16:07:39] 2024-06-19 20:07:35,170 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-19 16:07:39] 2024-06-19 20:07:36,403 [wrapper] ==== pilot stdout END ====
[2024-06-19 16:07:39] 2024-06-19 20:07:36,448 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-19 16:07:39] 2024-06-19 20:07:36,483 [wrapper] pilotpid: 32905
[2024-06-19 16:07:39] 2024-06-19 20:07:36,548 [wrapper] Pilot exit status: 0
[2024-06-19 16:07:39] 2024-06-19 20:07:36,744 [wrapper] pandaids: 6237139222
[2024-06-19 16:07:39] 2024-06-19 20:07:37,222 [wrapper] cleanup supervisor_pilot 55132 32906
[2024-06-19 16:07:39] 2024-06-19 20:07:37,228 [wrapper] Test setup, not cleaning
[2024-06-19 16:07:39] 2024-06-19 20:07:37,249 [wrapper] ==== wrapper stdout END ====
[2024-06-19 16:07:39] 2024-06-19 20:07:37,283 [wrapper] ==== wrapper stderr END ====
[2024-06-19 16:07:39] 2024-06-19 20:07:37,402 [wrapper] apfmon messages muted
[2024-06-19 16:07:39]  *** Error codes and diagnostics ***
[2024-06-19 16:07:39]     "exeErrorCode": 0,
[2024-06-19 16:07:39]     "exeErrorDiag": "",
[2024-06-19 16:07:39]     "pilotErrorCode": 0,
[2024-06-19 16:07:39]     "pilotErrorDiag": "",
[2024-06-19 16:07:39]  *** Listing of results directory ***
[2024-06-19 16:07:39] total 887200
[2024-06-19 16:07:39] -rw-r--r-- 1 boincer umatlas      5654 Jun 18 19:43 queuedata.json
[2024-06-19 16:07:39] -rw-r--r-- 1 boincer umatlas    469766 Jun 18 19:44 pilot3.tar.gz
[2024-06-19 16:07:39] -rwx------ 1 boincer umatlas     32308 Jun 18 19:45 runpilot2-wrapper.sh
[2024-06-19 16:07:39] -rw-r--r-- 1 boincer umatlas       100 Jun 19 01:33 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-19 16:07:39] -rwxr-xr-x 1 boincer umatlas      7986 Jun 19 01:33 run_atlas
[2024-06-19 16:07:39] -rw-r--r-- 1 boincer umatlas       105 Jun 19 01:33 job.xml
[2024-06-19 16:07:39] -rw-r--r-- 2 boincer umatlas 541508700 Jun 19 01:33 EVNT.38776210._000964.pool.root.1
[2024-06-19 16:07:39] -rw-r--r-- 2 boincer umatlas     17537 Jun 19 01:33 start_atlas.sh
[2024-06-19 16:07:39] drwxrwx--x 2 boincer umatlas      4096 Jun 19 01:33 shared
[2024-06-19 16:07:39] -rw-r--r-- 2 boincer umatlas    482531 Jun 19 01:33 input.tar.gz
[2024-06-19 16:07:39] -rw-r--r-- 1 boincer umatlas         0 Jun 19 01:33 boinc_lockfile
[2024-06-19 16:07:39] -rw-r--r-- 1 boincer umatlas      2647 Jun 19 01:34 pandaJob.out
[2024-06-19 16:07:39] -rw------- 1 boincer umatlas       467 Jun 19 01:34 setup.sh.local
[2024-06-19 16:07:39] -rw------- 1 boincer umatlas   1020814 Jun 19 01:36 agis_schedconf.cvmfs.json
[2024-06-19 16:07:39] -rw------- 1 boincer umatlas   1317943 Jun 19 01:36 cric_ddmendpoints.json
[2024-06-19 16:07:39] drwx------ 4 boincer umatlas      4096 Jun 19 01:36 pilot3
[2024-06-19 16:07:39] -rw------- 1 boincer umatlas 351092835 Jun 19 16:03 HITS.38921013._047429.pool.root.1
[2024-06-19 16:07:39] -rw-r--r-- 1 boincer umatlas       533 Jun 19 16:04 boinc_task_state.xml
[2024-06-19 16:07:39] -rw-r--r-- 1 boincer umatlas      6387 Jun 19 16:04 init_data.xml
[2024-06-19 16:07:39] -rw------- 1 boincer umatlas      1091 Jun 19 16:06 memory_monitor_summary.json
[2024-06-19 16:07:39] -rw------- 1 boincer umatlas         0 Jun 19 16:06 agis_ddmendpoints.agis.ALL.json
[2024-06-19 16:07:39] -rw------- 1 boincer umatlas    815479 Jun 19 16:06 log.38921013._047429.job.log.tgz.1
[2024-06-19 16:07:39] -rw------- 1 boincer umatlas        95 Jun 19 16:06 pilot_heartbeat.json
[2024-06-19 16:07:39] -rw------- 1 boincer umatlas      7773 Jun 19 16:07 heartbeat.json
[2024-06-19 16:07:39] -rw-r--r-- 1 boincer umatlas        29 Jun 19 16:07 wrapper_checkpoint.txt
[2024-06-19 16:07:39] -rw-r--r-- 1 boincer umatlas      8192 Jun 19 16:07 boinc_mmap_file
[2024-06-19 16:07:39] -rw------- 1 boincer umatlas      4397 Jun 19 16:07 pilotlog.txt
[2024-06-19 16:07:39] -rw------- 1 boincer umatlas   5362504 Jun 19 16:07 log.38921013._047429.job.log.1
[2024-06-19 16:07:39] -rw------- 1 boincer umatlas       357 Jun 19 16:07 output.list
[2024-06-19 16:07:39] -rw-r--r-- 1 boincer umatlas       620 Jun 19 16:07 runtime_log
[2024-06-19 16:07:39] -rw------- 1 boincer umatlas   6195200 Jun 19 16:07 result.tar.gz
[2024-06-19 16:07:39] -rw------- 1 boincer umatlas       654 Jun 19 16:07 UDELDm9gxd5n9Rq4apOajLDm4fhM0noT9bVo2ijZDmDRWKDmauJGXn.diag
[2024-06-19 16:07:39] -rw-r--r-- 1 boincer umatlas     11400 Jun 19 16:07 runtime_log.err
[2024-06-19 16:07:39] -rw-r--r-- 1 boincer umatlas     21879 Jun 19 16:07 stderr.txt
[2024-06-19 16:07:39] HITS file was successfully produced:
[2024-06-19 16:07:39] -rw------- 1 boincer umatlas 351092835 Jun 19 16:03 shared/HITS.pool.root.1
[2024-06-19 16:07:39]  *** Contents of shared directory: ***
[2024-06-19 16:07:39] total 878240
[2024-06-19 16:07:39] -rw-r--r-- 2 boincer umatlas 541508700 Jun 19 01:33 ATLAS.root_0
[2024-06-19 16:07:39] -rw-r--r-- 2 boincer umatlas     17537 Jun 19 01:33 start_atlas.sh
[2024-06-19 16:07:39] -rw-r--r-- 2 boincer umatlas    482531 Jun 19 01:33 input.tar.gz
[2024-06-19 16:07:39] -rw------- 1 boincer umatlas 351092835 Jun 19 16:03 HITS.pool.root.1
[2024-06-19 16:07:39] -rw------- 1 boincer umatlas   6195200 Jun 19 16:07 result.tar.gz
16:07:40 (5919): run_atlas exited; CPU time 139024.822683
16:07:40 (5919): called boinc_finish(0)

</stderr_txt>
]]>

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