Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-20 18:32:11 (97628): Detected: vboxwrapper 26206
2024-06-20 18:32:11 (97628): Detected: BOINC client v7.24.1
2024-06-20 18:32:11 (97628): Detected: VirtualBox VboxManage Interface (Version: 6.1.34)
2024-06-20 18:32:11 (97628): Successfully copied 'init_data.xml' to the shared directory.
2024-06-20 18:32:12 (97628): Create VM. (boinc_6a36fe2b1260cd23, slot#9)
2024-06-20 18:32:12 (97628): Setting Memory Size for VM. (4800MB)
2024-06-20 18:32:13 (97628): Setting CPU Count for VM. (8)
2024-06-20 18:32:13 (97628): Setting Chipset Options for VM.
2024-06-20 18:32:13 (97628): Setting Graphics Controller Options for VM.
2024-06-20 18:32:13 (97628): Setting Boot Options for VM.
2024-06-20 18:32:14 (97628): Setting Network Configuration for NAT.
2024-06-20 18:32:14 (97628): Enabling VM Network Access.
2024-06-20 18:32:14 (97628): Disabling USB Support for VM.
2024-06-20 18:32:14 (97628): Disabling COM Port Support for VM.
2024-06-20 18:32:15 (97628): Disabling LPT Port Support for VM.
2024-06-20 18:32:15 (97628): Disabling Audio Support for VM.
2024-06-20 18:32:15 (97628): Disabling Clipboard Support for VM.
2024-06-20 18:32:16 (97628): Disabling Drag and Drop Support for VM.
2024-06-20 18:32:16 (97628): Adding storage controller(s) to VM.
2024-06-20 18:32:16 (97628): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-20 18:32:17 (97628): Adding VirtualBox Guest Additions to VM.
2024-06-20 18:32:17 (97628): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-20 18:32:17 (97628): forwarding host port 55528 to guest port 80
2024-06-20 18:32:18 (97628): Enabling remote desktop for VM.
2024-06-20 18:32:18 (97628): Required extension pack not installed, remote desktop not enabled.
2024-06-20 18:32:18 (97628): Enabling shared directory for VM.
2024-06-20 18:32:18 (97628): Starting VM using VBoxManage interface. (boinc_6a36fe2b1260cd23, slot#9)
2024-06-20 18:32:25 (97628): Successfully started VM. (PID = '95848')
2024-06-20 18:32:25 (97628): Reporting VM Process ID to BOINC.
2024-06-20 18:32:25 (97628): Guest Log: BIOS: VirtualBox 6.1.34
2024-06-20 18:32:25 (97628): Guest Log: CPUID EDX: 0x178bfbff
2024-06-20 18:32:25 (97628): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-20 18:32:25 (97628): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-20 18:32:25 (97628): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-20 18:32:25 (97628): Detected: Web Application Enabled (http://localhost:55528)
2024-06-20 18:32:25 (97628): Preference change detected
2024-06-20 18:32:25 (97628): Setting CPU throttle for VM. (100%)
2024-06-20 18:32:25 (97628): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-20 18:32:27 (97628): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-20 18:32:27 (97628): Guest Log: BIOS: Booting from Hard Disk...
2024-06-20 18:32:30 (97628): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-20 18:32:30 (97628): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-20 18:32:30 (97628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-20 18:32:30 (97628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-20 18:32:30 (97628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-20 18:32:30 (97628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-20 18:32:30 (97628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-20 18:32:30 (97628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-20 18:32:30 (97628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-20 18:32:30 (97628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-20 18:32:30 (97628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-20 18:32:30 (97628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-20 18:32:30 (97628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-20 18:32:30 (97628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-20 18:32:30 (97628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-20 18:32:30 (97628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-20 18:32:30 (97628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-20 18:32:30 (97628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-20 18:32:30 (97628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-20 18:32:30 (97628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-20 18:32:30 (97628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-20 18:32:30 (97628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-20 18:32:30 (97628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-20 18:32:30 (97628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-20 18:32:30 (97628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-20 18:32:30 (97628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-20 18:32:30 (97628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-20 18:32:30 (97628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-20 18:32:30 (97628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-20 18:32:30 (97628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-20 18:32:30 (97628): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-20 18:32:30 (97628): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-20 18:32:41 (97628): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-20 18:32:41 (97628): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-20 18:32:54 (97628): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-20 18:32:54 (97628): Guest Log: 00:00:00.000374 main     Log opened 2024-06-20T18:32:52.819028000Z
2024-06-20 18:32:54 (97628): Guest Log: 00:00:00.000615 main     OS Product: Linux
2024-06-20 18:32:54 (97628): Guest Log: 00:00:00.000675 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-20 18:32:54 (97628): Guest Log: 00:00:00.000723 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-20 18:32:54 (97628): Guest Log: 00:00:00.000770 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-20 18:32:54 (97628): Guest Log: 00:00:00.000771 main     Process ID: 1369
2024-06-20 18:32:54 (97628): Guest Log: 00:00:00.000772 main     Package type: LINUX_64BITS_GENERIC
2024-06-20 18:32:54 (97628): Guest Log: 00:00:00.001990 main     5.2.32 r132073 started. Verbose level = 0
2024-06-20 18:32:54 (97628): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-20 18:32:54 (97628): Guest Log: [INFO] Mounting shared directory
2024-06-20 18:32:55 (97628): Guest Log: [INFO] Checking for init_data.xml
2024-06-20 18:33:04 (97628): Guest Log: 00:00:10.004863 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 880 953 000ns (GuestNow=1 718 901 183 941 752 000 ns GuestLast=1 718 908 372 822 705 000 ns fSetTimeLastLoop=true )
2024-06-20 18:33:52 (97628): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-20 18:33:52 (97628): Guest Log: [INFO] Detected branch: prod
2024-06-20 18:33:52 (97628): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-20 18:33:52 (97628): Guest Log: Copying input files
2024-06-20 18:33:59 (97628): Guest Log: Copied input files into RunAtlas.
2024-06-20 18:33:59 (97628): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-06-20 18:33:59 (97628): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-06-20 18:33:59 (97628): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-06-20 18:33:59 (97628): Guest Log: Further information can be found at the LHC@home message board.
2024-06-20 18:35:59 (97628): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-20 18:35:59 (97628): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-20 18:35:59 (97628): Guest Log: 2.6.3.0 1670 2 30128 134095 4 1 3117205 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2024-06-20 18:36:01 (97628): Guest Log: copied the webapp to /var/www
2024-06-20 18:36:01 (97628): Guest Log: ATHENA_PROC_NUMBER=8
2024-06-20 18:36:01 (97628): Guest Log: ATHENA_CORE_NUMBER=8
2024-06-20 18:36:02 (97628): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-20 18:36:02 (97628): Guest Log:  *** Starting ATLAS job. (PandaID=6236968235 taskID=38921007) ***
2024-06-20 20:12:29 (97628): Status Report: Elapsed Time: '6000.000000'
2024-06-20 20:12:29 (97628): Status Report: CPU Time: '36783.578125'
2024-06-20 21:52:34 (97628): Status Report: Elapsed Time: '12000.000000'
2024-06-20 21:52:34 (97628): Status Report: CPU Time: '84336.656250'
2024-06-20 23:32:38 (97628): Status Report: Elapsed Time: '18000.000000'
2024-06-20 23:32:38 (97628): Status Report: CPU Time: '131892.000000'
2024-06-21 01:12:42 (97628): Status Report: Elapsed Time: '24000.000000'
2024-06-21 01:12:42 (97628): Status Report: CPU Time: '179473.312500'
2024-06-21 02:43:07 (97628): Guest Log:  *** Job finished ***
2024-06-21 02:43:07 (97628): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-21 02:43:07 (97628): Guest Log: 2024-06-21 00:42:52,984 | INFO     | [data] queue_monitor thread has finished
2024-06-21 02:43:07 (97628): Guest Log: 2024-06-21 00:42:57,283 | INFO     | job.realtimelogging is not enabled
2024-06-21 02:43:07 (97628): Guest Log: 2024-06-21 00:42:58,291 | INFO     | [payload] run_realtimelog thread has finished
2024-06-21 02:43:07 (97628): Guest Log: 2024-06-21 00:43:00,254 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139888635385664)>', '<ExcThread(monitor, started 139887755917056)>']
2024-06-21 02:43:07 (97628): Guest Log: 2024-06-21 00:43:00,898 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-21 02:43:07 (97628): Guest Log: 2024-06-21 00:43:00,899 | INFO     | [monitor] control thread has ended
2024-06-21 02:43:07 (97628): Guest Log: 2024-06-21 00:43:05,259 | INFO     | all workflow threads have been joined
2024-06-21 02:43:07 (97628): Guest Log: 2024-06-21 00:43:05,260 | INFO     | end of generic workflow (traces error code: 0)
2024-06-21 02:43:07 (97628): Guest Log: 2024-06-21 00:43:05,260 | INFO     | traces error code: 0
2024-06-21 02:43:07 (97628): Guest Log: 2024-06-21 00:43:05,260 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-21 02:43:07 (97628): Guest Log: 2024-06-21 00:43:05,385 [wrapper] ==== pilot stdout END ====
2024-06-21 02:43:07 (97628): Guest Log: 2024-06-21 00:43:05,394 [wrapper] ==== wrapper stdout RESUME ====
2024-06-21 02:43:07 (97628): Guest Log: 2024-06-21 00:43:05,401 [wrapper] pilotpid: 6640
2024-06-21 02:43:07 (97628): Guest Log: 2024-06-21 00:43:05,409 [wrapper] Pilot exit status: 0
2024-06-21 02:43:07 (97628): Guest Log: 2024-06-21 00:43:06,713 [wrapper] pandaids: 6236968235
2024-06-21 02:43:07 (97628): Guest Log: 2024-06-21 00:43:06,776 [wrapper] cleanup supervisor_pilot  5722 6641
2024-06-21 02:43:07 (97628): Guest Log: 2024-06-21 00:43:06,784 [wrapper] Test setup, not cleaning
2024-06-21 02:43:07 (97628): Guest Log: 2024-06-21 00:43:06,795 [wrapper] ==== wrapper stdout END ====
2024-06-21 02:43:07 (97628): Guest Log: 2024-06-21 00:43:06,803 [wrapper] ==== wrapper stderr END ====
2024-06-21 02:43:07 (97628): Guest Log: 2024-06-21 00:43:06,819 [wrapper] apfmon messages muted
2024-06-21 02:43:07 (97628): Guest Log:  *** Error codes and diagnostics ***
2024-06-21 02:43:07 (97628): Guest Log:     "exeErrorCode": 0,
2024-06-21 02:43:07 (97628): Guest Log:     "exeErrorDiag": "",
2024-06-21 02:43:07 (97628): Guest Log:     "pilotErrorCode": 0,
2024-06-21 02:43:07 (97628): Guest Log:     "pilotErrorDiag": "",
2024-06-21 02:43:07 (97628): Guest Log:  *** Listing of results directory ***
2024-06-21 02:43:07 (97628): Guest Log: total 350032
2024-06-21 02:43:07 (97628): Guest Log: -rwx------. 1 atlas atlas     32308 Jun 18 22:37 runpilot2-wrapper.sh
2024-06-21 02:43:07 (97628): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 18 22:37 queuedata.json
2024-06-21 02:43:07 (97628): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 18 22:37 pilot3.tar.gz
2024-06-21 02:43:07 (97628): Guest Log: -rwxr-xr-x. 1 atlas atlas      9143 Jun 20 16:33 init_data.xml
2024-06-21 02:43:07 (97628): Guest Log: -rwxr-xr-x. 1 atlas atlas    482517 Jun 20 16:33 input.tar.gz
2024-06-21 02:43:07 (97628): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Jun 20 16:33 start_atlas.sh
2024-06-21 02:43:07 (97628): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 20 16:33 EVNT.38776201._000736.pool.root.1 -> /data/./ATLAS.root_0
2024-06-21 02:43:07 (97628): Guest Log: -rw-r--r--. 1 atlas atlas      2631 Jun 20 16:36 pandaJob.out
2024-06-21 02:43:07 (97628): Guest Log: -rw-------. 1 atlas atlas       424 Jun 20 16:36 setup.sh.local
2024-06-21 02:43:07 (97628): Guest Log: -rw-------. 1 atlas atlas   1020792 Jun 20 16:38 agis_schedconf.cvmfs.json
2024-06-21 02:43:07 (97628): Guest Log: -rw-------. 1 atlas atlas   1321251 Jun 20 16:38 cric_ddmendpoints.json
2024-06-21 02:43:07 (97628): Guest Log: drwx------. 4 atlas atlas      4096 Jun 20 16:38 pilot3
2024-06-21 02:43:07 (97628): Guest Log: -rw-------. 1 atlas atlas 348827237 Jun 21 00:41 HITS.38921007._048079.pool.root.1
2024-06-21 02:43:07 (97628): Guest Log: -rw-------. 1 atlas atlas        95 Jun 21 00:42 pilot_heartbeat.json
2024-06-21 02:43:07 (97628): Guest Log: -rw-------. 1 atlas atlas      1032 Jun 21 00:42 memory_monitor_summary.json
2024-06-21 02:43:07 (97628): Guest Log: -rw-------. 1 atlas atlas         0 Jun 21 00:42 agis_ddmendpoints.agis.ALL.json
2024-06-21 02:43:07 (97628): Guest Log: -rw-------. 1 atlas atlas    520113 Jun 21 00:42 log.38921007._048079.job.log.tgz.1
2024-06-21 02:43:07 (97628): Guest Log: -rw-------. 1 atlas atlas      7754 Jun 21 00:42 heartbeat.json
2024-06-21 02:43:07 (97628): Guest Log: -rw-------. 1 atlas atlas      4466 Jun 21 00:43 pilotlog.txt
2024-06-21 02:43:07 (97628): Guest Log: -rw-------. 1 atlas atlas   2548845 Jun 21 00:43 log.38921007._048079.job.log.1
2024-06-21 02:43:07 (97628): Guest Log: -rw-------. 1 atlas atlas       357 Jun 21 00:43 output.list
2024-06-21 02:43:07 (97628): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 21 00:43 runtime_log
2024-06-21 02:43:07 (97628): Guest Log: -rw-------. 1 atlas atlas   3092480 Jun 21 00:43 result.tar.gz
2024-06-21 02:43:07 (97628): Guest Log: -rw-r--r--. 1 atlas atlas     10931 Jun 21 00:43 runtime_log.err
2024-06-21 02:43:07 (97628): Guest Log: -rw-------. 1 atlas atlas       649 Jun 21 00:43 KayKDmjdwd5n7Olcko1bjSoqABFKDmABFKDmOtvXDmNRqKDmsxd4yn.diag
2024-06-21 02:43:07 (97628): Guest Log: Looking for outputfile HITS.38921007._048079.pool.root.1
2024-06-21 02:43:07 (97628): Guest Log: HITS file was successfully produced
2024-06-21 02:43:07 (97628): Guest Log: -rw-------. 1 atlas atlas 348827237 Jun 21 00:41 /home/atlas/RunAtlas/HITS.38921007._048079.pool.root.1
2024-06-21 02:43:10 (97628): Guest Log: Successfully finished the ATLAS job!
2024-06-21 02:43:10 (97628): Guest Log: Copying the results back to the shared directory!
2024-06-21 02:43:10 (97628): Guest Log:  *** Contents of shared directory: ***
2024-06-21 02:43:10 (97628): Guest Log: total 916280
2024-06-21 02:43:10 (97628): Guest Log: -rwxrwxrwx. 1 root root 585830531 Jun 20 16:32 ATLAS.root_0
2024-06-21 02:43:10 (97628): Guest Log: -rwxrwxrwx. 1 root root 348827237 Jun 21 00:43 HITS.pool.root.1
2024-06-21 02:43:10 (97628): Guest Log: -rwxrwxrwx. 1 root root      9143 Jun 20 16:32 init_data.xml
2024-06-21 02:43:10 (97628): Guest Log: -rwxrwxrwx. 1 root root    482517 Jun 19 04:53 input.tar.gz
2024-06-21 02:43:10 (97628): Guest Log: -rwxrwxrwx. 1 root root   3092480 Jun 21 00:43 result.tar.gz
2024-06-21 02:43:10 (97628): Guest Log: -rwxrwxrwx. 1 root root     17537 Jun 19 04:53 start_atlas.sh
2024-06-21 02:43:10 (97628): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-21 02:43:10 (97628): VM Completion File Detected.
2024-06-21 02:43:10 (97628): Powering off VM.
2024-06-21 02:43:12 (97628): Successfully stopped VM.
2024-06-21 02:43:12 (97628): Deregistering VM. (boinc_6a36fe2b1260cd23, slot#9)
2024-06-21 02:43:12 (97628): Removing network bandwidth throttle group from VM.
2024-06-21 02:43:13 (97628): Removing VM from VirtualBox.
02:43:18 (97628): called boinc_finish(0)

</stderr_txt>
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