Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-20 16:24:40 (99496): Detected: vboxwrapper 26206
2024-06-20 16:24:40 (99496): Detected: BOINC client v7.24.1
2024-06-20 16:24:40 (99496): Detected: VirtualBox VboxManage Interface (Version: 6.1.34)
2024-06-20 16:24:41 (99496): Successfully copied 'init_data.xml' to the shared directory.
2024-06-20 16:24:41 (99496): Create VM. (boinc_130bfe7559b2a447, slot#6)
2024-06-20 16:24:42 (99496): Setting Memory Size for VM. (4800MB)
2024-06-20 16:24:42 (99496): Setting CPU Count for VM. (8)
2024-06-20 16:24:42 (99496): Setting Chipset Options for VM.
2024-06-20 16:24:42 (99496): Setting Graphics Controller Options for VM.
2024-06-20 16:24:43 (99496): Setting Boot Options for VM.
2024-06-20 16:24:43 (99496): Setting Network Configuration for NAT.
2024-06-20 16:24:43 (99496): Enabling VM Network Access.
2024-06-20 16:24:43 (99496): Disabling USB Support for VM.
2024-06-20 16:24:44 (99496): Disabling COM Port Support for VM.
2024-06-20 16:24:44 (99496): Disabling LPT Port Support for VM.
2024-06-20 16:24:44 (99496): Disabling Audio Support for VM.
2024-06-20 16:24:44 (99496): Disabling Clipboard Support for VM.
2024-06-20 16:24:45 (99496): Disabling Drag and Drop Support for VM.
2024-06-20 16:24:45 (99496): Adding storage controller(s) to VM.
2024-06-20 16:24:45 (99496): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-20 16:24:46 (99496): Adding VirtualBox Guest Additions to VM.
2024-06-20 16:24:46 (99496): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-20 16:24:46 (99496): forwarding host port 54004 to guest port 80
2024-06-20 16:24:46 (99496): Enabling remote desktop for VM.
2024-06-20 16:24:47 (99496): Required extension pack not installed, remote desktop not enabled.
2024-06-20 16:24:47 (99496): Enabling shared directory for VM.
2024-06-20 16:24:47 (99496): Starting VM using VBoxManage interface. (boinc_130bfe7559b2a447, slot#6)
2024-06-20 16:24:54 (99496): Successfully started VM. (PID = '100596')
2024-06-20 16:24:54 (99496): Reporting VM Process ID to BOINC.
2024-06-20 16:24:54 (99496): Guest Log: BIOS: VirtualBox 6.1.34
2024-06-20 16:24:54 (99496): Guest Log: CPUID EDX: 0x178bfbff
2024-06-20 16:24:54 (99496): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-20 16:24:54 (99496): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-20 16:24:54 (99496): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-20 16:24:54 (99496): Detected: Web Application Enabled (http://localhost:54004)
2024-06-20 16:24:54 (99496): Preference change detected
2024-06-20 16:24:54 (99496): Setting CPU throttle for VM. (100%)
2024-06-20 16:24:55 (99496): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-20 16:24:56 (99496): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-20 16:24:56 (99496): Guest Log: BIOS: Booting from Hard Disk...
2024-06-20 16:24:59 (99496): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-20 16:24:59 (99496): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-20 16:24:59 (99496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-20 16:24:59 (99496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-20 16:24:59 (99496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-20 16:24:59 (99496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-20 16:24:59 (99496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-20 16:24:59 (99496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-20 16:24:59 (99496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-20 16:24:59 (99496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-20 16:24:59 (99496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-20 16:24:59 (99496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-20 16:24:59 (99496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-20 16:24:59 (99496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-20 16:24:59 (99496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-20 16:24:59 (99496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-20 16:24:59 (99496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-20 16:24:59 (99496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-20 16:24:59 (99496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-20 16:24:59 (99496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-20 16:24:59 (99496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-20 16:24:59 (99496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-20 16:24:59 (99496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-20 16:24:59 (99496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-20 16:24:59 (99496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-20 16:24:59 (99496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-20 16:24:59 (99496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-20 16:24:59 (99496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-20 16:24:59 (99496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-20 16:24:59 (99496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-20 16:24:59 (99496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-20 16:24:59 (99496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-20 16:25:10 (99496): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-20 16:25:10 (99496): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-20 16:25:24 (99496): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-20 16:25:24 (99496): Guest Log: 00:00:00.000280 main     Log opened 2024-06-20T16:25:22.713190000Z
2024-06-20 16:25:24 (99496): Guest Log: 00:00:00.000465 main     OS Product: Linux
2024-06-20 16:25:24 (99496): Guest Log: 00:00:00.000527 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-20 16:25:24 (99496): Guest Log: 00:00:00.000576 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-20 16:25:24 (99496): Guest Log: 00:00:00.000677 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-20 16:25:24 (99496): Guest Log: 00:00:00.000679 main     Process ID: 1369
2024-06-20 16:25:24 (99496): Guest Log: 00:00:00.000680 main     Package type: LINUX_64BITS_GENERIC
2024-06-20 16:25:24 (99496): Guest Log: 00:00:00.002043 main     5.2.32 r132073 started. Verbose level = 0
2024-06-20 16:25:24 (99496): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-20 16:25:24 (99496): Guest Log: [INFO] Mounting shared directory
2024-06-20 16:25:25 (99496): Guest Log: [INFO] Checking for init_data.xml
2024-06-20 16:25:34 (99496): Guest Log: 00:00:10.005657 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 157 409 000ns (GuestNow=1 718 893 534 559 548 000 ns GuestLast=1 718 900 722 716 957 000 ns fSetTimeLastLoop=true )
2024-06-20 16:26:19 (99496): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-20 16:26:19 (99496): Guest Log: [INFO] Detected branch: prod
2024-06-20 16:26:19 (99496): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-20 16:26:19 (99496): Guest Log: Copying input files
2024-06-20 16:26:26 (99496): Guest Log: Copied input files into RunAtlas.
2024-06-20 16:26:26 (99496): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-06-20 16:26:26 (99496): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-06-20 16:26:26 (99496): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-06-20 16:26:26 (99496): Guest Log: Further information can be found at the LHC@home message board.
2024-06-20 16:27:22 (99496): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-20 16:27:22 (99496): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-20 16:27:22 (99496): Guest Log: 2.6.3.0 1671 1 30160 134088 4 1 3117205 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-06-20 16:27:25 (99496): Guest Log: copied the webapp to /var/www
2024-06-20 16:27:25 (99496): Guest Log: ATHENA_PROC_NUMBER=8
2024-06-20 16:27:25 (99496): Guest Log: ATHENA_CORE_NUMBER=8
2024-06-20 16:27:25 (99496): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-20 16:27:25 (99496): Guest Log:  *** Starting ATLAS job. (PandaID=6236934327 taskID=38921013) ***
2024-06-20 18:05:05 (99496): Status Report: Elapsed Time: '6000.000000'
2024-06-20 18:05:05 (99496): Status Report: CPU Time: '36803.265625'
2024-06-20 19:45:09 (99496): Status Report: Elapsed Time: '12000.000000'
2024-06-20 19:45:09 (99496): Status Report: CPU Time: '84434.031250'
2024-06-20 21:25:14 (99496): Status Report: Elapsed Time: '18000.000000'
2024-06-20 21:25:14 (99496): Status Report: CPU Time: '131995.156250'
2024-06-20 23:05:18 (99496): Status Report: Elapsed Time: '24000.000000'
2024-06-20 23:05:18 (99496): Status Report: CPU Time: '179539.671875'
2024-06-21 00:45:23 (99496): Status Report: Elapsed Time: '30000.000000'
2024-06-21 00:45:23 (99496): Status Report: CPU Time: '227116.171875'
2024-06-21 01:37:02 (99496): Guest Log:  *** Job finished ***
2024-06-21 01:37:02 (99496): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-21 01:37:02 (99496): Guest Log: 2024-06-20 23:36:51,571 | INFO     | [job] queue monitor thread has finished
2024-06-21 01:37:02 (99496): Guest Log: 2024-06-20 23:36:51,809 | INFO     | [data] copytool_out thread has finished
2024-06-21 01:37:02 (99496): Guest Log: 2024-06-20 23:36:54,209 | INFO     | [data] queue_monitor thread has finished
2024-06-21 01:37:02 (99496): Guest Log: 2024-06-20 23:36:55,617 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140524780394304)>', '<ExcThread(monitor, started 140524182812416)>']
2024-06-21 01:37:02 (99496): Guest Log: 2024-06-20 23:36:55,973 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-21 01:37:02 (99496): Guest Log: 2024-06-20 23:36:55,973 | INFO     | [monitor] control thread has ended
2024-06-21 01:37:02 (99496): Guest Log: 2024-06-20 23:37:00,617 | INFO     | all workflow threads have been joined
2024-06-21 01:37:02 (99496): Guest Log: 2024-06-20 23:37:00,617 | INFO     | end of generic workflow (traces error code: 0)
2024-06-21 01:37:02 (99496): Guest Log: 2024-06-20 23:37:00,618 | INFO     | traces error code: 0
2024-06-21 01:37:02 (99496): Guest Log: 2024-06-20 23:37:00,618 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-21 01:37:02 (99496): Guest Log: 2024-06-20 23:37:00,813 [wrapper] ==== pilot stdout END ====
2024-06-21 01:37:02 (99496): Guest Log: 2024-06-20 23:37:00,821 [wrapper] ==== wrapper stdout RESUME ====
2024-06-21 01:37:02 (99496): Guest Log: 2024-06-20 23:37:00,829 [wrapper] pilotpid: 6597
2024-06-21 01:37:02 (99496): Guest Log: 2024-06-20 23:37:00,837 [wrapper] Pilot exit status: 0
2024-06-21 01:37:02 (99496): Guest Log: 2024-06-20 23:37:01,058 [wrapper] pandaids: 6236934327
2024-06-21 01:37:02 (99496): Guest Log: 2024-06-20 23:37:01,119 [wrapper] cleanup supervisor_pilot 11899 6598
2024-06-21 01:37:02 (99496): Guest Log: 2024-06-20 23:37:01,127 [wrapper] Test setup, not cleaning
2024-06-21 01:37:02 (99496): Guest Log: 2024-06-20 23:37:01,134 [wrapper] ==== wrapper stdout END ====
2024-06-21 01:37:02 (99496): Guest Log: 2024-06-20 23:37:01,143 [wrapper] ==== wrapper stderr END ====
2024-06-21 01:37:02 (99496): Guest Log: 2024-06-20 23:37:01,161 [wrapper] apfmon messages muted
2024-06-21 01:37:02 (99496): Guest Log:  *** Error codes and diagnostics ***
2024-06-21 01:37:02 (99496): Guest Log:     "exeErrorCode": 0,
2024-06-21 01:37:02 (99496): Guest Log:     "exeErrorDiag": "",
2024-06-21 01:37:02 (99496): Guest Log:     "pilotErrorCode": 0,
2024-06-21 01:37:02 (99496): Guest Log:     "pilotErrorDiag": "",
2024-06-21 01:37:02 (99496): Guest Log:  *** Listing of results directory ***
2024-06-21 01:37:02 (99496): Guest Log: total 345560
2024-06-21 01:37:02 (99496): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 18 22:22 pilot3.tar.gz
2024-06-21 01:37:02 (99496): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 18 22:27 queuedata.json
2024-06-21 01:37:02 (99496): Guest Log: -rwx------. 1 atlas atlas     32308 Jun 18 22:27 runpilot2-wrapper.sh
2024-06-21 01:37:02 (99496): Guest Log: -rwxr-xr-x. 1 atlas atlas      9142 Jun 20 14:26 init_data.xml
2024-06-21 01:37:02 (99496): Guest Log: -rwxr-xr-x. 1 atlas atlas    482535 Jun 20 14:26 input.tar.gz
2024-06-21 01:37:02 (99496): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Jun 20 14:26 start_atlas.sh
2024-06-21 01:37:02 (99496): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 20 14:26 EVNT.38776210._000939.pool.root.1 -> /data/./ATLAS.root_0
2024-06-21 01:37:02 (99496): Guest Log: -rw-r--r--. 1 atlas atlas      2647 Jun 20 14:27 pandaJob.out
2024-06-21 01:37:02 (99496): Guest Log: -rw-------. 1 atlas atlas       424 Jun 20 14:27 setup.sh.local
2024-06-21 01:37:02 (99496): Guest Log: -rw-------. 1 atlas atlas   1015545 Jun 20 14:28 agis_schedconf.cvmfs.json
2024-06-21 01:37:02 (99496): Guest Log: -rw-------. 1 atlas atlas   1321254 Jun 20 14:28 cric_ddmendpoints.json
2024-06-21 01:37:02 (99496): Guest Log: drwx------. 4 atlas atlas      4096 Jun 20 14:28 pilot3
2024-06-21 01:37:02 (99496): Guest Log: -rw-------. 1 atlas atlas 343530891 Jun 20 23:35 HITS.38921013._047281.pool.root.1
2024-06-21 01:37:02 (99496): Guest Log: -rw-------. 1 atlas atlas        95 Jun 20 23:36 pilot_heartbeat.json
2024-06-21 01:37:02 (99496): Guest Log: -rw-------. 1 atlas atlas      1033 Jun 20 23:36 memory_monitor_summary.json
2024-06-21 01:37:02 (99496): Guest Log: -rw-------. 1 atlas atlas         0 Jun 20 23:36 agis_ddmendpoints.agis.ALL.json
2024-06-21 01:37:02 (99496): Guest Log: -rw-------. 1 atlas atlas    540318 Jun 20 23:36 log.38921013._047281.job.log.tgz.1
2024-06-21 01:37:02 (99496): Guest Log: -rw-------. 1 atlas atlas      7752 Jun 20 23:36 heartbeat.json
2024-06-21 01:37:02 (99496): Guest Log: -rw-------. 1 atlas atlas      4271 Jun 20 23:37 pilotlog.txt
2024-06-21 01:37:02 (99496): Guest Log: -rw-------. 1 atlas atlas   2895680 Jun 20 23:37 log.38921013._047281.job.log.1
2024-06-21 01:37:02 (99496): Guest Log: -rw-------. 1 atlas atlas       357 Jun 20 23:37 output.list
2024-06-21 01:37:02 (99496): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 20 23:37 runtime_log
2024-06-21 01:37:02 (99496): Guest Log: -rw-------. 1 atlas atlas   3450880 Jun 20 23:37 result.tar.gz
2024-06-21 01:37:02 (99496): Guest Log: -rw-------. 1 atlas atlas       649 Jun 20 23:37 wiNNDmbTwd5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDm2TjKDmy76exm.diag
2024-06-21 01:37:02 (99496): Guest Log: -rw-r--r--. 1 atlas atlas     10931 Jun 20 23:37 runtime_log.err
2024-06-21 01:37:02 (99496): Guest Log: Looking for outputfile HITS.38921013._047281.pool.root.1
2024-06-21 01:37:02 (99496): Guest Log: HITS file was successfully produced
2024-06-21 01:37:02 (99496): Guest Log: -rw-------. 1 atlas atlas 343530891 Jun 20 23:35 /home/atlas/RunAtlas/HITS.38921013._047281.pool.root.1
2024-06-21 01:37:05 (99496): Guest Log: Successfully finished the ATLAS job!
2024-06-21 01:37:05 (99496): Guest Log: Copying the results back to the shared directory!
2024-06-21 01:37:05 (99496): Guest Log:  *** Contents of shared directory: ***
2024-06-21 01:37:05 (99496): Guest Log: total 866836
2024-06-21 01:37:05 (99496): Guest Log: -rwxrwxrwx. 1 root root 540136955 Jun 20 14:24 ATLAS.root_0
2024-06-21 01:37:05 (99496): Guest Log: -rwxrwxrwx. 1 root root 343530891 Jun 20 23:37 HITS.pool.root.1
2024-06-21 01:37:05 (99496): Guest Log: -rwxrwxrwx. 1 root root      9142 Jun 20 14:24 init_data.xml
2024-06-21 01:37:05 (99496): Guest Log: -rwxrwxrwx. 1 root root    482535 Jun 19 04:50 input.tar.gz
2024-06-21 01:37:05 (99496): Guest Log: -rwxrwxrwx. 1 root root   3450880 Jun 20 23:37 result.tar.gz
2024-06-21 01:37:05 (99496): Guest Log: -rwxrwxrwx. 1 root root     17537 Jun 19 04:50 start_atlas.sh
2024-06-21 01:37:05 (99496): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-21 01:37:05 (99496): VM Completion File Detected.
2024-06-21 01:37:05 (99496): Powering off VM.
2024-06-21 01:37:06 (99496): Successfully stopped VM.
2024-06-21 01:37:06 (99496): Deregistering VM. (boinc_130bfe7559b2a447, slot#6)
2024-06-21 01:37:06 (99496): Removing network bandwidth throttle group from VM.
2024-06-21 01:37:07 (99496): Removing VM from VirtualBox.
01:37:12 (99496): called boinc_finish(0)

</stderr_txt>
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