Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
23:42:45 (1065959): wrapper (7.7.26015): starting
23:42:45 (1065959): wrapper: running run_atlas (--nthreads 4)
[2024-06-22 23:42:45] Arguments: --nthreads 4
[2024-06-22 23:42:45] Threads: 4
[2024-06-22 23:42:45] Checking for CVMFS
[2024-06-22 23:42:46] Probing /cvmfs/atlas.cern.ch... OK
[2024-06-22 23:42:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-06-22 23:42:46] Running cvmfs_config stat atlas.cern.ch
[2024-06-22 23:42:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-06-22 23:42:46] 2.11.2.0 2570 4128 59912 134180 1 56 2257911 4096000 909 130560 0 5084866 99.994 639379 7975 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.42:3128 1
[2024-06-22 23:42:46] CVMFS is ok
[2024-06-22 23:42:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-22 23:42:46] Checking for apptainer binary...
[2024-06-22 23:42:46] Using apptainer found in PATH at /usr/bin/apptainer
[2024-06-22 23:42:46] Running /usr/bin/apptainer --version
[2024-06-22 23:42:46] apptainer version 1.3.0
[2024-06-22 23:42:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-22 23:42:46] TS-P310
[2024-06-22 23:42:46] apptainer works
[2024-06-22 23:42:46] Set ATHENA_PROC_NUMBER=4
[2024-06-22 23:42:46] Set ATHENA_CORE_NUMBER=4
[2024-06-22 23:42:46] Starting ATLAS job with PandaID=6236942409
[2024-06-22 23:42:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-23 05:11:58]  *** The last 200 lines of the pilot log: ***
[2024-06-23 05:11:58] 2024-06-23 03:11:35,604 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-06-23 05:11:58] 2024-06-23 03:11:37,825 | INFO     | CPU arch script returned: x86-64-v3
[2024-06-23 05:11:58] 2024-06-23 03:11:37,825 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6236942409/memory_monitor_summary.json (trf name=prmon)
[2024-06-23 05:11:58] 2024-06-23 03:11:37,826 | INFO     | extracted standard info from prmon json
[2024-06-23 05:11:58] 2024-06-23 03:11:37,826 | INFO     | extracted standard memory fields from prmon json
[2024-06-23 05:11:58] 2024-06-23 03:11:37,826 | WARNING  | GPU info not found in prmon json
[2024-06-23 05:11:58] 2024-06-23 03:11:37,826 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-06-23 05:11:58] 2024-06-23 03:11:37,826 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-06-23 05:11:58] 2024-06-23 03:11:37,830 | INFO     | fitting pss+swap vs Time
[2024-06-23 05:11:58] 2024-06-23 03:11:37,831 | INFO     | model: linear, x: [1719092594.0, 1719092655.0, 1719092716.0, 1719092777.0, 1719092838.0, 1719092899.0, 1719092960.0, 1719093021.0, 1719093082.0, 1719093143.0, 1719
[2024-06-23 05:11:58] 2024-06-23 03:11:37,831 | INFO     | sum of square deviations: 10449170802.0
[2024-06-23 05:11:58] 2024-06-23 03:11:37,833 | INFO     | sum of deviations: 15215350474.999994
[2024-06-23 05:11:58] 2024-06-23 03:11:37,833 | INFO     | mean x: 1719102415.0
[2024-06-23 05:11:58] 2024-06-23 03:11:37,833 | INFO     | mean y: 2426389.411764706
[2024-06-23 05:11:58] 2024-06-23 03:11:37,833 | INFO     | -- intersect: -2500810110.6210814
[2024-06-23 05:11:58] 2024-06-23 03:11:37,833 | INFO     | intersect: -2500810110.6210814
[2024-06-23 05:11:58] 2024-06-23 03:11:37,834 | INFO     | chi2: 2.023501016495818
[2024-06-23 05:11:58] 2024-06-23 03:11:37,834 | INFO     | model: linear, x: [1719092594.0, 1719092655.0, 1719092716.0, 1719092777.0, 1719092838.0, 1719092899.0, 1719092960.0, 1719093021.0, 1719093082.0, 1719093143.0, 1719
[2024-06-23 05:11:58] 2024-06-23 03:11:37,834 | INFO     | sum of square deviations: 9971385099.5
[2024-06-23 05:11:58] 2024-06-23 03:11:37,836 | INFO     | sum of deviations: 15196248416.500006
[2024-06-23 05:11:58] 2024-06-23 03:11:37,836 | INFO     | mean x: 1719102262.5
[2024-06-23 05:11:58] 2024-06-23 03:11:37,837 | INFO     | mean y: 2426383.323899371
[2024-06-23 05:11:58] 2024-06-23 03:11:37,837 | INFO     | -- intersect: -2617460901.5054817
[2024-06-23 05:11:58] 2024-06-23 03:11:37,837 | INFO     | intersect: -2617460901.5054817
[2024-06-23 05:11:58] 2024-06-23 03:11:37,837 | INFO     | chi2: 2.0240379699662703
[2024-06-23 05:11:58] 2024-06-23 03:11:37,837 | INFO     | current chi2=2.0240379699662703 (change=-0.02653586363806747 %)
[2024-06-23 05:11:58] 2024-06-23 03:11:37,837 | INFO     | right removable region: 317
[2024-06-23 05:11:58] 2024-06-23 03:11:37,837 | INFO     | model: linear, x: [1719092899.0, 1719092960.0, 1719093021.0, 1719093082.0, 1719093143.0, 1719093204.0, 1719093265.0, 1719093326.0, 1719093387.0, 1719093448.0, 1719
[2024-06-23 05:11:58] 2024-06-23 03:11:37,838 | INFO     | sum of square deviations: 9971385099.5
[2024-06-23 05:11:58] 2024-06-23 03:11:37,840 | INFO     | sum of deviations: -46394602707.49999
[2024-06-23 05:11:58] 2024-06-23 03:11:37,840 | INFO     | mean x: 1719102567.5
[2024-06-23 05:11:58] 2024-06-23 03:11:37,840 | INFO     | mean y: 2445979.1603773586
[2024-06-23 05:11:58] 2024-06-23 03:11:37,840 | INFO     | -- intersect: 8001041945.191715
[2024-06-23 05:11:58] 2024-06-23 03:11:37,840 | INFO     | intersect: 8001041945.191715
[2024-06-23 05:11:58] 2024-06-23 03:11:37,840 | INFO     | chi2: 0.28093317247502575
[2024-06-23 05:11:58] 2024-06-23 03:11:37,840 | INFO     | current chi2=0.28093317247502575 (change=86.11647979492842 %)
[2024-06-23 05:11:58] 2024-06-23 03:11:37,841 | INFO     | model: linear, x: [1719093204.0, 1719093265.0, 1719093326.0, 1719093387.0, 1719093448.0, 1719093509.0, 1719093570.0, 1719093631.0, 1719093692.0, 1719093753.0, 1719
[2024-06-23 05:11:58] 2024-06-23 03:11:37,841 | INFO     | sum of square deviations: 9508390372.0
[2024-06-23 05:11:58] 2024-06-23 03:11:37,843 | INFO     | sum of deviations: -39706865725.00001
[2024-06-23 05:11:58] 2024-06-23 03:11:37,843 | INFO     | mean x: 1719102720.0
[2024-06-23 05:11:58] 2024-06-23 03:11:37,843 | INFO     | mean y: 2443757.335463259
[2024-06-23 05:11:58] 2024-06-23 03:11:37,843 | INFO     | -- intersect: 7181385534.014369
[2024-06-23 05:11:58] 2024-06-23 03:11:37,843 | INFO     | intersect: 7181385534.014369
[2024-06-23 05:11:58] 2024-06-23 03:11:37,844 | INFO     | chi2: 0.25757732301792025
[2024-06-23 05:11:58] 2024-06-23 03:11:37,844 | INFO     | current chi2=0.25757732301792025 (change=8.313667357734971 %)
[2024-06-23 05:11:58] 2024-06-23 03:11:37,844 | INFO     | left removable region: 20
[2024-06-23 05:11:58] 2024-06-23 03:11:37,844 | INFO     | model: linear, x: [1719093814.0, 1719093875.0, 1719093936.0, 1719093997.0, 1719094058.0, 1719094119.0, 1719094180.0, 1719094241.0, 1719094302.0, 1719094363.0, 1719
[2024-06-23 05:11:58] 2024-06-23 03:11:37,844 | INFO     | sum of square deviations: 8123493708.0
[2024-06-23 05:11:58] 2024-06-23 03:11:37,846 | INFO     | sum of deviations: -8796871549.0
[2024-06-23 05:11:58] 2024-06-23 03:11:37,846 | INFO     | mean x: 1719102842.0
[2024-06-23 05:11:58] 2024-06-23 03:11:37,846 | INFO     | mean y: 2433317.68013468
[2024-06-23 05:11:58] 2024-06-23 03:11:37,846 | INFO     | -- intersect: 1864037133.0067859
[2024-06-23 05:11:58] 2024-06-23 03:11:37,846 | INFO     | intersect: 1864037133.0067859
[2024-06-23 05:11:58] 2024-06-23 03:11:37,847 | INFO     | chi2: 0.11363673718099689
[2024-06-23 05:11:58] 2024-06-23 03:11:37,847 | INFO     | -- intersect: 1864037133.0067859
[2024-06-23 05:11:58] 2024-06-23 03:11:37,847 | INFO     | current memory leak: -1.08 B/s (using 297 data points, chi2=0.11)
[2024-06-23 05:11:58] 2024-06-23 03:11:37,847 | INFO     | ..............................
[2024-06-23 05:11:58] 2024-06-23 03:11:37,847 | INFO     | . Timing measurements:
[2024-06-23 05:11:58] 2024-06-23 03:11:37,847 | INFO     | . get job = 0 s
[2024-06-23 05:11:58] 2024-06-23 03:11:37,847 | INFO     | . initial setup = 1 s
[2024-06-23 05:11:58] 2024-06-23 03:11:37,847 | INFO     | . payload setup = 3 s
[2024-06-23 05:11:58] 2024-06-23 03:11:37,848 | INFO     | . stage-in = 0 s
[2024-06-23 05:11:58] 2024-06-23 03:11:37,848 | INFO     | . payload execution = 19693 s
[2024-06-23 05:11:58] 2024-06-23 03:11:37,848 | INFO     | . stage-out = 0 s
[2024-06-23 05:11:58] 2024-06-23 03:11:37,848 | INFO     | . log creation = 0 s
[2024-06-23 05:11:58] 2024-06-23 03:11:37,848 | INFO     | ..............................
[2024-06-23 05:11:58] 2024-06-23 03:11:37,919 | INFO     | 
[2024-06-23 05:11:58] 2024-06-23 03:11:37,919 | INFO     | job summary report
[2024-06-23 05:11:58] 2024-06-23 03:11:37,919 | INFO     | --------------------------------------------------
[2024-06-23 05:11:58] 2024-06-23 03:11:37,919 | INFO     | PanDA job id: 6236942409
[2024-06-23 05:11:58] 2024-06-23 03:11:37,919 | INFO     | task id: 38920987
[2024-06-23 05:11:58] 2024-06-23 03:11:37,919 | INFO     | errors: (none)
[2024-06-23 05:11:58] 2024-06-23 03:11:37,919 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-23 05:11:58] 2024-06-23 03:11:37,919 | INFO     | pilot state: finished 
[2024-06-23 05:11:58] 2024-06-23 03:11:37,919 | INFO     | transexitcode: 0
[2024-06-23 05:11:58] 2024-06-23 03:11:37,919 | INFO     | exeerrorcode: 0
[2024-06-23 05:11:58] 2024-06-23 03:11:37,919 | INFO     | exeerrordiag: 
[2024-06-23 05:11:58] 2024-06-23 03:11:37,919 | INFO     | exitcode: 0
[2024-06-23 05:11:58] 2024-06-23 03:11:37,919 | INFO     | exitmsg: OK
[2024-06-23 05:11:58] 2024-06-23 03:11:37,919 | INFO     | cpuconsumptiontime: 76491 s
[2024-06-23 05:11:58] 2024-06-23 03:11:37,920 | INFO     | nevents: 400
[2024-06-23 05:11:58] 2024-06-23 03:11:37,920 | INFO     | neventsw: 0
[2024-06-23 05:11:58] 2024-06-23 03:11:37,920 | INFO     | pid: 1076585
[2024-06-23 05:11:58] 2024-06-23 03:11:37,920 | INFO     | pgrp: 1076585
[2024-06-23 05:11:58] 2024-06-23 03:11:37,920 | INFO     | corecount: 4
[2024-06-23 05:11:58] 2024-06-23 03:11:37,920 | INFO     | event service: False
[2024-06-23 05:11:58] 2024-06-23 03:11:37,920 | INFO     | sizes: {0: 2386883, 1: 2387025, 3: 2387231, 11: 2387259, 19700: 2420508, 19701: 2429468, 19705: 2429652, 19710: 2429822}
[2024-06-23 05:11:58] 2024-06-23 03:11:37,920 | INFO     | --------------------------------------------------
[2024-06-23 05:11:58] 2024-06-23 03:11:37,920 | INFO     | 
[2024-06-23 05:11:58] 2024-06-23 03:11:37,920 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2024-06-23 05:11:58] 2024-06-23 03:11:37,934 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-23 05:11:58] 2024-06-23 03:11:37,935 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-23 05:11:58] 2024-06-23 03:11:37,935 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-23 05:11:58] 2024-06-23 03:11:37,935 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-23 05:11:58] 2024-06-23 03:11:37,935 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-23 05:11:58] 2024-06-23 03:11:37,935 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-23 05:11:58] 2024-06-23 03:11:37,935 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-23 05:11:58] 2024-06-23 03:11:37,935 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-23 05:11:58] 2024-06-23 03:11:37,935 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-23 05:11:58] 2024-06-23 03:11:37,935 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-23 05:11:58] 2024-06-23 03:11:37,935 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-23 05:11:58] 2024-06-23 03:11:37,935 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-23 05:11:58] 2024-06-23 03:11:37,936 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-23 05:11:58] 2024-06-23 03:11:37,936 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-23 05:11:58] 2024-06-23 03:11:37,936 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-23 05:11:58] 2024-06-23 03:11:37,936 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-23 05:11:58] 2024-06-23 03:11:37,936 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-23 05:11:58] 2024-06-23 03:11:37,936 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-23 05:11:58] 2024-06-23 03:11:37,936 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-23 05:11:58] 2024-06-23 03:11:37,936 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-23 05:11:58] 2024-06-23 03:11:37,936 | INFO     | job 6236942409 has completed (purged errors)
[2024-06-23 05:11:58] 2024-06-23 03:11:37,936 | INFO     | overall cleanup function is called
[2024-06-23 05:11:58] 2024-06-23 03:11:38,943 | INFO     | --- collectZombieJob: --- 10, [1076585]
[2024-06-23 05:11:58] 2024-06-23 03:11:38,943 | INFO     | zombie collector waiting for pid 1076585
[2024-06-23 05:11:58] 2024-06-23 03:11:38,944 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-23 05:11:58] 2024-06-23 03:11:39,949 | INFO     | collected zombie processes
[2024-06-23 05:11:58] 2024-06-23 03:11:39,949 | INFO     | will now attempt to kill all subprocesses of pid=1076585
[2024-06-23 05:11:58] 2024-06-23 03:11:39,995 | INFO     | process IDs to be killed: [1076585] (in reverse order)
[2024-06-23 05:11:58] 2024-06-23 03:11:40,025 | WARNING  | found no corresponding commands to process id(s)
[2024-06-23 05:11:58] 2024-06-23 03:11:40,025 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-23 05:11:58] 2024-06-23 03:11:40,027 | INFO     | did not find any defunct processes belonging to 1076585
[2024-06-23 05:11:58] 2024-06-23 03:11:40,029 | INFO     | did not find any defunct processes belonging to 1076585
[2024-06-23 05:11:58] 2024-06-23 03:11:40,029 | INFO     | ready for new job
[2024-06-23 05:11:58] 2024-06-23 03:11:40,029 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-23 05:11:58] 2024-06-23 03:11:40,031 | INFO     | *************************************
[2024-06-23 05:11:58] 2024-06-23 03:11:40,031 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-23 05:11:58] 2024-06-23 03:11:40,031 | INFO     | *************************************
[2024-06-23 05:11:58] 2024-06-23 03:11:40,031 | INFO     | 
[2024-06-23 05:11:58] 2024-06-23 03:11:40,032 | INFO     | architecture information:
[2024-06-23 05:11:58] 2024-06-23 03:11:40,032 | INFO     | executing command: cat /etc/os-release
[2024-06-23 05:11:58] 2024-06-23 03:11:40,042 | INFO     | cat /etc/os-release:
[2024-06-23 05:11:58] NAME="CentOS Linux"
[2024-06-23 05:11:58] VERSION="7 (Core)"
[2024-06-23 05:11:58] ID="centos"
[2024-06-23 05:11:58] ID_LIKE="rhel fedora"
[2024-06-23 05:11:58] VERSION_ID="7"
[2024-06-23 05:11:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-23 05:11:58] ANSI_COLOR="0;31"
[2024-06-23 05:11:58] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-23 05:11:58] HOME_URL="https://www.centos.org/"
[2024-06-23 05:11:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-23 05:11:58] 
[2024-06-23 05:11:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-23 05:11:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-23 05:11:58] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-23 05:11:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-23 05:11:58] 
[2024-06-23 05:11:58] 2024-06-23 03:11:40,042 | INFO     | *************************************
[2024-06-23 05:11:58] 2024-06-23 03:11:40,545 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2024-06-23 05:11:58] 2024-06-23 03:11:40,556 | INFO     | sufficient remaining disk space (62248714240 B)
[2024-06-23 05:11:58] 2024-06-23 03:11:40,556 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-23 05:11:58] 2024-06-23 03:11:40,556 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-23 05:11:58] 2024-06-23 03:11:40,556 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-06-23 05:11:58] 2024-06-23 03:11:40,557 | INFO     | found 0 job(s) in 20 queues
[2024-06-23 05:11:58] 2024-06-23 03:11:40,557 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-23 05:11:58] 2024-06-23 03:11:40,557 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-23 05:11:58] 2024-06-23 03:11:40,614 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-06-23 05:11:58] 2024-06-23 03:11:40,614 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-06-23 05:11:58] 2024-06-23 03:11:40,614 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-23 05:11:58] 2024-06-23 03:11:40,614 | INFO     | will abort loop
[2024-06-23 05:11:58] 2024-06-23 03:11:41,130 | INFO     | all data control threads have been joined
[2024-06-23 05:11:58] 2024-06-23 03:11:41,139 | INFO     | all payload control threads have been joined
[2024-06-23 05:11:58] 2024-06-23 03:11:41,562 | INFO     | [job] retrieve thread has finished
[2024-06-23 05:11:58] 2024-06-23 03:11:41,619 | INFO     | [job] job monitor thread has finished
[2024-06-23 05:11:58] 2024-06-23 03:11:41,620 | INFO     | [payload] validate_pre thread has finished
[2024-06-23 05:11:58] 2024-06-23 03:11:41,691 | INFO     | [payload] validate_post thread has finished
[2024-06-23 05:11:58] 2024-06-23 03:11:41,783 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-23 05:11:58] 2024-06-23 03:11:42,042 | INFO     | all job control threads have been joined
[2024-06-23 05:11:58] 2024-06-23 03:11:42,136 | INFO     | [data] control thread has finished
[2024-06-23 05:11:58] 2024-06-23 03:11:42,144 | INFO     | [payload] control thread has finished
[2024-06-23 05:11:58] 2024-06-23 03:11:42,197 | INFO     | [payload] failed_post thread has finished
[2024-06-23 05:11:58] 2024-06-23 03:11:42,340 | INFO     | [payload] execute_payloads thread has finished
[2024-06-23 05:11:58] 2024-06-23 03:11:42,627 | INFO     | [data] copytool_in thread has finished
[2024-06-23 05:11:58] 2024-06-23 03:11:42,761 | INFO     | [job] create_data_payload thread has finished
[2024-06-23 05:11:58] 2024-06-23 03:11:42,761 | INFO     | [job] validate thread has finished
[2024-06-23 05:11:58] 2024-06-23 03:11:42,837 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-23 05:11:58] 2024-06-23 03:11:42,929 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-23 05:11:58] 2024-06-23 03:11:43,047 | INFO     | [job] control thread has finished
[2024-06-23 05:11:58] 2024-06-23 03:11:43,788 | INFO     | [data] copytool_out thread has finished
[2024-06-23 05:11:58] 2024-06-23 03:11:43,934 | INFO     | [job] queue monitor thread has finished
[2024-06-23 05:11:58] 2024-06-23 03:11:46,840 | INFO     | [data] queue_monitor thread has finished
[2024-06-23 05:11:58] 2024-06-23 03:11:50,987 | INFO     | job.realtimelogging is not enabled
[2024-06-23 05:11:58] 2024-06-23 03:11:51,992 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-23 05:11:58] 2024-06-23 03:11:53,006 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139746599184192)>', '<ExcThread(monitor, started 139746240075520)>']
[2024-06-23 05:11:58] 2024-06-23 03:11:53,617 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-23 05:11:58] 2024-06-23 03:11:53,617 | INFO     | [monitor] control thread has ended
[2024-06-23 05:11:58] 2024-06-23 03:11:58,031 | INFO     | all workflow threads have been joined
[2024-06-23 05:11:58] 2024-06-23 03:11:58,031 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-23 05:11:58] 2024-06-23 03:11:58,031 | INFO     | traces error code: 0
[2024-06-23 05:11:58] 2024-06-23 03:11:58,032 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-23 05:11:58] 2024-06-23 03:11:58,106 [wrapper] ==== pilot stdout END ====
[2024-06-23 05:11:58] 2024-06-23 03:11:58,108 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-23 05:11:58] 2024-06-23 03:11:58,110 [wrapper] pilotpid: 1070143
[2024-06-23 05:11:58] 2024-06-23 03:11:58,112 [wrapper] Pilot exit status: 0
[2024-06-23 05:11:58] 2024-06-23 03:11:58,118 [wrapper] pandaids: 6236942409
[2024-06-23 05:11:58] 2024-06-23 03:11:58,136 [wrapper] cleanup supervisor_pilot 1155527 1070144
[2024-06-23 05:11:58] 2024-06-23 03:11:58,138 [wrapper] Test setup, not cleaning
[2024-06-23 05:11:58] 2024-06-23 03:11:58,140 [wrapper] ==== wrapper stdout END ====
[2024-06-23 05:11:58] 2024-06-23 03:11:58,141 [wrapper] ==== wrapper stderr END ====
[2024-06-23 05:11:58] 2024-06-23 03:11:58,145 [wrapper] apfmon messages muted
[2024-06-23 05:11:58]  *** Error codes and diagnostics ***
[2024-06-23 05:11:58]     "exeErrorCode": 0,
[2024-06-23 05:11:58]     "exeErrorDiag": "",
[2024-06-23 05:11:58]     "pilotErrorCode": 0,
[2024-06-23 05:11:58]     "pilotErrorDiag": "",
[2024-06-23 05:11:58]  *** Listing of results directory ***
[2024-06-23 05:11:58] insgesamt 964212
[2024-06-23 05:11:58] -rw-r--r-- 1 boinc boinc    469766 19. Jun 00:22 pilot3.tar.gz
[2024-06-23 05:11:58] -rw-r--r-- 1 boinc boinc      5654 19. Jun 00:27 queuedata.json
[2024-06-23 05:11:58] -rwx------ 1 boinc boinc     32308 19. Jun 00:27 runpilot2-wrapper.sh
[2024-06-23 05:11:58] -rw-r--r-- 1 boinc boinc       100 22. Jun 23:42 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-23 05:11:58] -rwxr-xr-x 1 boinc boinc      7986 22. Jun 23:42 run_atlas
[2024-06-23 05:11:58] -rw-r--r-- 1 boinc boinc       105 22. Jun 23:42 job.xml
[2024-06-23 05:11:58] -rw-r--r-- 1 boinc boinc      6705 22. Jun 23:42 init_data.xml
[2024-06-23 05:11:58] -rw-r--r-- 2 boinc boinc 644099972 22. Jun 23:42 EVNT.38776170._000538.pool.root.1
[2024-06-23 05:11:58] drwxrwx--x 2 boinc boinc      4096 22. Jun 23:42 shared
[2024-06-23 05:11:58] -rw-r--r-- 2 boinc boinc    482534 22. Jun 23:42 input.tar.gz
[2024-06-23 05:11:58] -rw-r--r-- 2 boinc boinc     17537 22. Jun 23:42 start_atlas.sh
[2024-06-23 05:11:58] -rw-r--r-- 1 boinc boinc         0 22. Jun 23:42 boinc_lockfile
[2024-06-23 05:11:58] -rw-r--r-- 1 boinc boinc      2619 22. Jun 23:42 pandaJob.out
[2024-06-23 05:11:58] -rw------- 1 boinc boinc       461 22. Jun 23:42 setup.sh.local
[2024-06-23 05:11:58] -rw------- 1 boinc boinc   1025761 22. Jun 23:42 agis_schedconf.cvmfs.json
[2024-06-23 05:11:58] -rw------- 1 boinc boinc   1321363 22. Jun 23:42 cric_ddmendpoints.json
[2024-06-23 05:11:58] drwx------ 4 boinc boinc      4096 22. Jun 23:42 pilot3
[2024-06-23 05:11:58] -rw------- 1 boinc boinc 335045608 23. Jun 05:10 HITS.38920987._058825.pool.root.1
[2024-06-23 05:11:58] -rw-r--r-- 1 boinc boinc       531 23. Jun 05:11 boinc_task_state.xml
[2024-06-23 05:11:58] -rw------- 1 boinc boinc      1026 23. Jun 05:11 memory_monitor_summary.json
[2024-06-23 05:11:58] -rw------- 1 boinc boinc        95 23. Jun 05:11 pilot_heartbeat.json
[2024-06-23 05:11:58] -rw------- 1 boinc boinc         0 23. Jun 05:11 agis_ddmendpoints.agis.ALL.json
[2024-06-23 05:11:58] -rw------- 1 boinc boinc    398749 23. Jun 05:11 log.38920987._058825.job.log.tgz.1
[2024-06-23 05:11:58] -rw------- 1 boinc boinc      7676 23. Jun 05:11 heartbeat.json
[2024-06-23 05:11:58] -rw-r--r-- 1 boinc boinc      8192 23. Jun 05:11 boinc_mmap_file
[2024-06-23 05:11:58] -rw-r--r-- 1 boinc boinc        28 23. Jun 05:11 wrapper_checkpoint.txt
[2024-06-23 05:11:58] -rw------- 1 boinc boinc      4592 23. Jun 05:11 pilotlog.txt
[2024-06-23 05:11:58] -rw------- 1 boinc boinc   1935386 23. Jun 05:11 log.38920987._058825.job.log.1
[2024-06-23 05:11:58] -rw------- 1 boinc boinc       357 23. Jun 05:11 output.list
[2024-06-23 05:11:58] -rw-r--r-- 1 boinc boinc       620 23. Jun 05:11 runtime_log
[2024-06-23 05:11:58] -rw------- 1 boinc boinc   2355200 23. Jun 05:11 result.tar.gz
[2024-06-23 05:11:58] -rw-r--r-- 1 boinc boinc     11334 23. Jun 05:11 runtime_log.err
[2024-06-23 05:11:58] -rw------- 1 boinc boinc       638 23. Jun 05:11 6GgLDmbTwd5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmrTjKDmsRcdUm.diag
[2024-06-23 05:11:58] -rw-r--r-- 1 boinc boinc     21290 23. Jun 05:11 stderr.txt
[2024-06-23 05:11:58] HITS file was successfully produced:
[2024-06-23 05:11:58] -rw------- 1 boinc boinc 335045608 23. Jun 05:10 shared/HITS.pool.root.1
[2024-06-23 05:11:58]  *** Contents of shared directory: ***
[2024-06-23 05:11:58] insgesamt 959000
[2024-06-23 05:11:58] -rw-r--r-- 2 boinc boinc 644099972 22. Jun 23:42 ATLAS.root_0
[2024-06-23 05:11:58] -rw-r--r-- 2 boinc boinc    482534 22. Jun 23:42 input.tar.gz
[2024-06-23 05:11:58] -rw-r--r-- 2 boinc boinc     17537 22. Jun 23:42 start_atlas.sh
[2024-06-23 05:11:58] -rw------- 1 boinc boinc 335045608 23. Jun 05:10 HITS.pool.root.1
[2024-06-23 05:11:58] -rw------- 1 boinc boinc   2355200 23. Jun 05:11 result.tar.gz
05:11:59 (1065959): run_atlas exited; CPU time 76438.685714
05:11:59 (1065959): called boinc_finish(0)

</stderr_txt>
]]>

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