Stderr output

<core_client_version>8.0.3</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-19 06:36:03 (426443): Detected: vboxwrapper 26206
2024-06-19 06:36:03 (426443): Detected: BOINC client v8.0.3
2024-06-19 06:36:03 (426443): Detected: VirtualBox VboxManage Interface (Version: 7.0.16)
2024-06-19 06:36:03 (426443): Successfully copied 'init_data.xml' to the shared directory.
2024-06-19 06:36:03 (426443): Create VM. (boinc_cc6315e205aa3932, slot#11)
2024-06-19 06:36:04 (426443): Setting Memory Size for VM. (4096MB)
2024-06-19 06:36:04 (426443): Setting CPU Count for VM. (1)
2024-06-19 06:36:04 (426443): Setting Chipset Options for VM.
2024-06-19 06:36:04 (426443): Setting Graphics Controller Options for VM.
2024-06-19 06:36:04 (426443): Setting Boot Options for VM.
2024-06-19 06:36:04 (426443): Setting Network Configuration for NAT.
2024-06-19 06:36:04 (426443): Enabling VM Network Access.
2024-06-19 06:36:04 (426443): Disabling USB Support for VM.
2024-06-19 06:36:04 (426443): Disabling COM Port Support for VM.
2024-06-19 06:36:04 (426443): Disabling LPT Port Support for VM.
2024-06-19 06:36:04 (426443): Disabling Audio Support for VM.
2024-06-19 06:36:05 (426443): Disabling Clipboard Support for VM.
2024-06-19 06:36:05 (426443): Disabling Drag and Drop Support for VM.
2024-06-19 06:36:05 (426443): Adding storage controller(s) to VM.
2024-06-19 06:36:05 (426443): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-19 06:36:05 (426443): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-19 06:36:05 (426443): forwarding host port 58995 to guest port 80
2024-06-19 06:36:05 (426443): Enabling remote desktop for VM.
2024-06-19 06:36:05 (426443): Enabling shared directory for VM.
2024-06-19 06:36:06 (426443): Starting VM using VBoxManage interface. (boinc_cc6315e205aa3932, slot#11)
2024-06-19 06:36:07 (426443): Successfully started VM. (PID = '426831')
2024-06-19 06:36:07 (426443): Reporting VM Process ID to BOINC.
2024-06-19 06:36:07 (426443): Guest Log: BIOS: VirtualBox 7.0.16
2024-06-19 06:36:07 (426443): Guest Log: CPUID EDX: 0x178bfbff
2024-06-19 06:36:07 (426443): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-19 06:36:07 (426443): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-19 06:36:07 (426443): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-19 06:36:07 (426443): Detected: Web Application Enabled (http://localhost:58995)
2024-06-19 06:36:07 (426443): Detected: Remote Desktop Enabled (localhost:38469)
2024-06-19 06:36:07 (426443): Preference change detected
2024-06-19 06:36:07 (426443): Setting CPU throttle for VM. (100%)
2024-06-19 06:36:07 (426443): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-19 06:36:09 (426443): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-19 06:36:09 (426443): Guest Log: BIOS: Booting from Hard Disk...
2024-06-19 06:36:12 (426443): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-19 06:36:12 (426443): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-19 06:36:12 (426443): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-19 06:36:12 (426443): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-19 06:36:12 (426443): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-19 06:36:12 (426443): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-19 06:36:12 (426443): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-19 06:36:12 (426443): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-19 06:36:12 (426443): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-19 06:36:12 (426443): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-19 06:36:12 (426443): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-19 06:36:12 (426443): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-19 06:36:12 (426443): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-19 06:36:12 (426443): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-19 06:36:12 (426443): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-19 06:36:12 (426443): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-19 06:36:12 (426443): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-19 06:36:12 (426443): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-19 06:36:12 (426443): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-19 06:36:12 (426443): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-19 06:36:12 (426443): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-19 06:36:12 (426443): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-19 06:36:12 (426443): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-19 06:36:12 (426443): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-19 06:36:12 (426443): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-19 06:36:12 (426443): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-19 06:36:12 (426443): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-19 06:36:12 (426443): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-19 06:36:12 (426443): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-19 06:36:12 (426443): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-19 06:36:12 (426443): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-19 06:36:12 (426443): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-19 06:36:18 (426443): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-19 06:36:18 (426443): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-19 06:36:32 (426443): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-19 06:36:32 (426443): Guest Log: 00:00:00.000284 main     Log opened 2024-06-19T04:36:30.155995000Z
2024-06-19 06:36:32 (426443): Guest Log: 00:00:00.000496 main     OS Product: Linux
2024-06-19 06:36:32 (426443): Guest Log: 00:00:00.000576 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-19 06:36:32 (426443): Guest Log: 00:00:00.000625 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-19 06:36:32 (426443): Guest Log: 00:00:00.000690 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-19 06:36:32 (426443): Guest Log: 00:00:00.000692 main     Process ID: 1236
2024-06-19 06:36:32 (426443): Guest Log: 00:00:00.000692 main     Package type: LINUX_64BITS_GENERIC
2024-06-19 06:36:32 (426443): Guest Log: 00:00:00.003467 main     5.2.32 r132073 started. Verbose level = 0
2024-06-19 06:36:32 (426443): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-19 06:36:32 (426443): Guest Log: [INFO] Mounting shared directory
2024-06-19 06:36:32 (426443): Guest Log: [INFO] Checking for init_data.xml
2024-06-19 06:36:37 (426443): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-19 06:36:37 (426443): Guest Log: [INFO] Detected branch: prod
2024-06-19 06:36:38 (426443): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-19 06:36:38 (426443): Guest Log: Copying input files
2024-06-19 06:36:43 (426443): Guest Log: Copied input files into RunAtlas.
2024-06-19 06:36:43 (426443): Guest Log: Detected user-configured HTTP proxy at http://localhost:3128 - will set in /etc/cvmfs/default.local
2024-06-19 06:37:01 (426443): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-19 06:37:01 (426443): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-19 06:37:01 (426443): Guest Log: 2.6.3.0 1509 0 31564 134039 3 1 3117205 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.161.84:3126 1
2024-06-19 06:37:02 (426443): Guest Log: copied the webapp to /var/www
2024-06-19 06:37:02 (426443): Guest Log: core_number=1
2024-06-19 06:37:02 (426443): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-19 06:37:02 (426443): Guest Log:  *** Starting ATLAS job. (PandaID=6236897155 taskID=38920987) ***
2024-06-19 08:15:07 (426443): Status Report: Elapsed Time: '6000.000000'
2024-06-19 08:15:07 (426443): Status Report: CPU Time: '5267.170000'
2024-06-19 09:54:08 (426443): Status Report: Elapsed Time: '12000.000000'
2024-06-19 09:54:08 (426443): Status Report: CPU Time: '11206.660000'
2024-06-19 11:33:09 (426443): Status Report: Elapsed Time: '18000.000000'
2024-06-19 11:33:09 (426443): Status Report: CPU Time: '17155.040000'
2024-06-19 13:12:09 (426443): Status Report: Elapsed Time: '24000.000000'
2024-06-19 13:12:09 (426443): Status Report: CPU Time: '23090.750000'
2024-06-19 14:51:10 (426443): Status Report: Elapsed Time: '30000.000000'
2024-06-19 14:51:10 (426443): Status Report: CPU Time: '29030.750000'
2024-06-19 16:30:11 (426443): Status Report: Elapsed Time: '36000.000000'
2024-06-19 16:30:11 (426443): Status Report: CPU Time: '34977.700000'
2024-06-19 18:09:11 (426443): Status Report: Elapsed Time: '42000.000000'
2024-06-19 18:09:11 (426443): Status Report: CPU Time: '40926.340000'
2024-06-19 19:48:12 (426443): Status Report: Elapsed Time: '48000.000000'
2024-06-19 19:48:12 (426443): Status Report: CPU Time: '46863.780000'
2024-06-19 21:27:12 (426443): Status Report: Elapsed Time: '54000.000000'
2024-06-19 21:27:12 (426443): Status Report: CPU Time: '52811.640000'
2024-06-19 23:06:13 (426443): Status Report: Elapsed Time: '60000.000000'
2024-06-19 23:06:13 (426443): Status Report: CPU Time: '58759.130000'
2024-06-20 00:45:14 (426443): Status Report: Elapsed Time: '66000.000000'
2024-06-20 00:45:14 (426443): Status Report: CPU Time: '64707.550000'
2024-06-20 02:24:14 (426443): Status Report: Elapsed Time: '72000.000000'
2024-06-20 02:24:14 (426443): Status Report: CPU Time: '70655.270000'
2024-06-20 04:03:15 (426443): Status Report: Elapsed Time: '78000.000000'
2024-06-20 04:03:15 (426443): Status Report: CPU Time: '76598.140000'
2024-06-20 05:42:15 (426443): Status Report: Elapsed Time: '84000.000000'
2024-06-20 05:42:15 (426443): Status Report: CPU Time: '82546.470000'
2024-06-20 07:21:16 (426443): Status Report: Elapsed Time: '90000.000000'
2024-06-20 07:21:16 (426443): Status Report: CPU Time: '88494.300000'
2024-06-20 07:36:16 (426443): Guest Log:  *** Job finished ***
2024-06-20 07:36:16 (426443): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-20 07:36:16 (426443): Guest Log: 2024-06-20 05:36:02,346 | INFO     | [data] queue_monitor thread has finished
2024-06-20 07:36:16 (426443): Guest Log: 2024-06-20 05:36:08,732 | INFO     | job.realtimelogging is not enabled
2024-06-20 07:36:16 (426443): Guest Log: 2024-06-20 05:36:09,733 | INFO     | [payload] run_realtimelog thread has finished
2024-06-20 07:36:16 (426443): Guest Log: 2024-06-20 05:36:10,056 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140424118908736)>', '<ExcThread(monitor, started 140423536301824)>']
2024-06-20 07:36:16 (426443): Guest Log: 2024-06-20 05:36:10,358 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-20 07:36:16 (426443): Guest Log: 2024-06-20 05:36:10,358 | INFO     | [monitor] control thread has ended
2024-06-20 07:36:16 (426443): Guest Log: 2024-06-20 05:36:15,057 | INFO     | all workflow threads have been joined
2024-06-20 07:36:16 (426443): Guest Log: 2024-06-20 05:36:15,057 | INFO     | end of generic workflow (traces error code: 0)
2024-06-20 07:36:16 (426443): Guest Log: 2024-06-20 05:36:15,057 | INFO     | traces error code: 0
2024-06-20 07:36:16 (426443): Guest Log: 2024-06-20 05:36:15,057 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-20 07:36:16 (426443): Guest Log: 2024-06-20 05:36:15,173 [wrapper] ==== pilot stdout END ====
2024-06-20 07:36:16 (426443): Guest Log: 2024-06-20 05:36:15,178 [wrapper] ==== wrapper stdout RESUME ====
2024-06-20 07:36:16 (426443): Guest Log: 2024-06-20 05:36:15,183 [wrapper] pilotpid: 6352
2024-06-20 07:36:16 (426443): Guest Log: 2024-06-20 05:36:15,187 [wrapper] Pilot exit status: 0
2024-06-20 07:36:16 (426443): Guest Log: 2024-06-20 05:36:15,250 [wrapper] pandaids: 6236897155
2024-06-20 07:36:16 (426443): Guest Log: 2024-06-20 05:36:15,286 [wrapper] cleanup supervisor_pilot 17392 6353
2024-06-20 07:36:16 (426443): Guest Log: 2024-06-20 05:36:15,292 [wrapper] Test setup, not cleaning
2024-06-20 07:36:16 (426443): Guest Log: 2024-06-20 05:36:15,296 [wrapper] ==== wrapper stdout END ====
2024-06-20 07:36:16 (426443): Guest Log: 2024-06-20 05:36:15,305 [wrapper] ==== wrapper stderr END ====
2024-06-20 07:36:16 (426443): Guest Log: 2024-06-20 05:36:15,315 [wrapper] apfmon messages muted
2024-06-20 07:36:16 (426443): Guest Log:  *** Error codes and diagnostics ***
2024-06-20 07:36:16 (426443): Guest Log:     "exeErrorCode": 0,
2024-06-20 07:36:16 (426443): Guest Log:     "exeErrorDiag": "",
2024-06-20 07:36:16 (426443): Guest Log:     "pilotErrorCode": 0,
2024-06-20 07:36:16 (426443): Guest Log:     "pilotErrorDiag": "",
2024-06-20 07:36:16 (426443): Guest Log:  *** Listing of results directory ***
2024-06-20 07:36:16 (426443): Guest Log: total 360420
2024-06-20 07:36:16 (426443): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 18 22:03 pilot3.tar.gz
2024-06-20 07:36:16 (426443): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 18 22:13 queuedata.json
2024-06-20 07:36:16 (426443): Guest Log: -rwx------. 1 atlas atlas     32308 Jun 18 22:14 runpilot2-wrapper.sh
2024-06-20 07:36:16 (426443): Guest Log: -rw-r--r--. 1 atlas atlas      9683 Jun 19 04:36 init_data.xml
2024-06-20 07:36:16 (426443): Guest Log: -rw-r--r--. 1 atlas atlas    482533 Jun 19 04:36 input.tar.gz
2024-06-20 07:36:16 (426443): Guest Log: -rw-r--r--. 1 atlas atlas     17537 Jun 19 04:36 start_atlas.sh
2024-06-20 07:36:16 (426443): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 19 04:36 EVNT.38776170._000969.pool.root.1 -> /data/./ATLAS.root_0
2024-06-20 07:36:16 (426443): Guest Log: -rw-r--r--. 1 atlas atlas      2620 Jun 19 04:37 pandaJob.out
2024-06-20 07:36:16 (426443): Guest Log: -rw-------. 1 atlas atlas       456 Jun 19 04:37 setup.sh.local
2024-06-20 07:36:16 (426443): Guest Log: -rw-------. 1 atlas atlas   1020830 Jun 19 04:38 agis_schedconf.cvmfs.json
2024-06-20 07:36:16 (426443): Guest Log: -rw-------. 1 atlas atlas   1317943 Jun 19 04:38 cric_ddmendpoints.json
2024-06-20 07:36:16 (426443): Guest Log: drwx------. 4 atlas atlas      4096 Jun 19 04:38 pilot3
2024-06-20 07:36:16 (426443): Guest Log: -rw-------. 1 atlas atlas 335623550 Jun 20 05:34 HITS.38920987._058814.pool.root.1
2024-06-20 07:36:16 (426443): Guest Log: -rw-------. 1 atlas atlas        95 Jun 20 05:35 pilot_heartbeat.json
2024-06-20 07:36:16 (426443): Guest Log: -rw-------. 1 atlas atlas      1020 Jun 20 05:35 memory_monitor_summary.json
2024-06-20 07:36:16 (426443): Guest Log: -rw-------. 1 atlas atlas         0 Jun 20 05:35 agis_ddmendpoints.agis.ALL.json
2024-06-20 07:36:16 (426443): Guest Log: -rw-------. 1 atlas atlas   1468493 Jun 20 05:35 log.38920987._058814.job.log.tgz.1
2024-06-20 07:36:16 (426443): Guest Log: -rw-------. 1 atlas atlas      7726 Jun 20 05:35 heartbeat.json
2024-06-20 07:36:16 (426443): Guest Log: -rw-------. 1 atlas atlas      4466 Jun 20 05:36 pilotlog.txt
2024-06-20 07:36:16 (426443): Guest Log: -rw-------. 1 atlas atlas  13522722 Jun 20 05:36 log.38920987._058814.job.log.1
2024-06-20 07:36:16 (426443): Guest Log: -rw-------. 1 atlas atlas       357 Jun 20 05:36 output.list
2024-06-20 07:36:16 (426443): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 20 05:36 runtime_log
2024-06-20 07:36:16 (426443): Guest Log: -rw-------. 1 atlas atlas  15011840 Jun 20 05:36 result.tar.gz
2024-06-20 07:36:16 (426443): Guest Log: -rw-r--r--. 1 atlas atlas     11143 Jun 20 05:36 runtime_log.err
2024-06-20 07:36:16 (426443): Guest Log: -rw-------. 1 atlas atlas       647 Jun 20 05:36 cw4LDmuGwd5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmaTjKDm9MLiXn.diag
2024-06-20 07:36:16 (426443): Guest Log: Looking for outputfile HITS.38920987._058814.pool.root.1
2024-06-20 07:36:16 (426443): Guest Log: HITS file was successfully produced
2024-06-20 07:36:16 (426443): Guest Log: -rw-------. 1 atlas atlas 335623550 Jun 20 05:34 /home/atlas/RunAtlas/HITS.38920987._058814.pool.root.1
2024-06-20 07:36:16 (426443): Guest Log: Successfully finished the ATLAS job!
2024-06-20 07:36:16 (426443): Guest Log: Copying the results back to the shared directory!
2024-06-20 07:36:16 (426443): Guest Log:  *** Contents of shared directory: ***
2024-06-20 07:36:16 (426443): Guest Log: total 639380
2024-06-20 07:36:16 (426443): Guest Log: -rw-r--r--. 1 root root 639189922 Jun 19 04:36 ATLAS.root_0
2024-06-20 07:36:16 (426443): Guest Log: -rw-r--r--. 1 root root      9683 Jun 19 04:36 init_data.xml
2024-06-20 07:36:16 (426443): Guest Log: -rw-r--r--. 1 root root    482533 Jun 19 04:36 input.tar.gz
2024-06-20 07:36:16 (426443): Guest Log: -rw-r--r--. 1 root root  15011840 Jun 20 05:36 result.tar.gz
2024-06-20 07:36:16 (426443): Guest Log: -rw-r--r--. 1 root root     17537 Jun 19 04:36 start_atlas.sh
2024-06-20 07:36:16 (426443): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-20 07:36:16 (426443): VM Completion File Detected.
2024-06-20 07:36:16 (426443): Powering off VM.
2024-06-20 07:36:16 (426443): Successfully stopped VM.
2024-06-20 07:36:16 (426443): Deregistering VM. (boinc_cc6315e205aa3932, slot#11)
2024-06-20 07:36:17 (426443): Removing network bandwidth throttle group from VM.
2024-06-20 07:36:17 (426443): Removing VM from VirtualBox.
07:36:22 (426443): called boinc_finish(0)

</stderr_txt>
]]>

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