Stderr output

<core_client_version>8.0.3</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-19 05:06:55 (418513): Detected: vboxwrapper 26206
2024-06-19 05:06:55 (418513): Detected: BOINC client v8.0.3
2024-06-19 05:06:55 (418513): Detected: VirtualBox VboxManage Interface (Version: 7.0.16)
2024-06-19 05:06:55 (418513): Successfully copied 'init_data.xml' to the shared directory.
2024-06-19 05:06:56 (418513): Create VM. (boinc_9befc243fd9c4dee, slot#2)
2024-06-19 05:06:56 (418513): Setting Memory Size for VM. (4096MB)
2024-06-19 05:06:56 (418513): Setting CPU Count for VM. (1)
2024-06-19 05:06:56 (418513): Setting Chipset Options for VM.
2024-06-19 05:06:56 (418513): Setting Graphics Controller Options for VM.
2024-06-19 05:06:56 (418513): Setting Boot Options for VM.
2024-06-19 05:06:56 (418513): Setting Network Configuration for NAT.
2024-06-19 05:06:56 (418513): Enabling VM Network Access.
2024-06-19 05:06:56 (418513): Disabling USB Support for VM.
2024-06-19 05:06:56 (418513): Disabling COM Port Support for VM.
2024-06-19 05:06:56 (418513): Disabling LPT Port Support for VM.
2024-06-19 05:06:57 (418513): Disabling Audio Support for VM.
2024-06-19 05:06:57 (418513): Disabling Clipboard Support for VM.
2024-06-19 05:06:57 (418513): Disabling Drag and Drop Support for VM.
2024-06-19 05:06:57 (418513): Adding storage controller(s) to VM.
2024-06-19 05:06:57 (418513): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-19 05:06:57 (418513): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-19 05:06:57 (418513): forwarding host port 58979 to guest port 80
2024-06-19 05:06:57 (418513): Enabling remote desktop for VM.
2024-06-19 05:06:57 (418513): Enabling shared directory for VM.
2024-06-19 05:06:58 (418513): Starting VM using VBoxManage interface. (boinc_9befc243fd9c4dee, slot#2)
2024-06-19 05:06:59 (418513): Successfully started VM. (PID = '418911')
2024-06-19 05:06:59 (418513): Reporting VM Process ID to BOINC.
2024-06-19 05:06:59 (418513): Guest Log: BIOS: VirtualBox 7.0.16
2024-06-19 05:06:59 (418513): Guest Log: CPUID EDX: 0x178bfbff
2024-06-19 05:06:59 (418513): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-19 05:06:59 (418513): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-19 05:06:59 (418513): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-19 05:06:59 (418513): Detected: Web Application Enabled (http://localhost:58979)
2024-06-19 05:06:59 (418513): Detected: Remote Desktop Enabled (localhost:37795)
2024-06-19 05:06:59 (418513): Preference change detected
2024-06-19 05:06:59 (418513): Setting CPU throttle for VM. (100%)
2024-06-19 05:06:59 (418513): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-19 05:07:01 (418513): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-19 05:07:01 (418513): Guest Log: BIOS: Booting from Hard Disk...
2024-06-19 05:07:04 (418513): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-19 05:07:04 (418513): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-19 05:07:04 (418513): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-19 05:07:04 (418513): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-19 05:07:04 (418513): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-19 05:07:04 (418513): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-19 05:07:04 (418513): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-19 05:07:04 (418513): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-19 05:07:04 (418513): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-19 05:07:04 (418513): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-19 05:07:04 (418513): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-19 05:07:04 (418513): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-19 05:07:04 (418513): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-19 05:07:04 (418513): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-19 05:07:04 (418513): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-19 05:07:04 (418513): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-19 05:07:04 (418513): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-19 05:07:04 (418513): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-19 05:07:04 (418513): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-19 05:07:04 (418513): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-19 05:07:04 (418513): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-19 05:07:04 (418513): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-19 05:07:04 (418513): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-19 05:07:04 (418513): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-19 05:07:04 (418513): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-19 05:07:04 (418513): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-19 05:07:04 (418513): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-19 05:07:04 (418513): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-19 05:07:04 (418513): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-19 05:07:04 (418513): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-19 05:07:04 (418513): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-19 05:07:04 (418513): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-19 05:07:09 (418513): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-19 05:07:09 (418513): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-19 05:07:22 (418513): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-19 05:07:22 (418513): Guest Log: 00:00:00.000252 main     Log opened 2024-06-19T03:07:20.125717000Z
2024-06-19 05:07:22 (418513): Guest Log: 00:00:00.000449 main     OS Product: Linux
2024-06-19 05:07:22 (418513): Guest Log: 00:00:00.000537 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-19 05:07:22 (418513): Guest Log: 00:00:00.000750 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-19 05:07:22 (418513): Guest Log: 00:00:00.000830 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-19 05:07:22 (418513): Guest Log: 00:00:00.000831 main     Process ID: 1236
2024-06-19 05:07:22 (418513): Guest Log: 00:00:00.000832 main     Package type: LINUX_64BITS_GENERIC
2024-06-19 05:07:22 (418513): Guest Log: 00:00:00.003252 main     5.2.32 r132073 started. Verbose level = 0
2024-06-19 05:07:22 (418513): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-19 05:07:22 (418513): Guest Log: [INFO] Mounting shared directory
2024-06-19 05:07:22 (418513): Guest Log: [INFO] Checking for init_data.xml
2024-06-19 05:08:18 (418513): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-19 05:08:18 (418513): Guest Log: [INFO] Detected branch: prod
2024-06-19 05:08:19 (418513): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-19 05:08:19 (418513): Guest Log: Copying input files
2024-06-19 05:08:23 (418513): Guest Log: Copied input files into RunAtlas.
2024-06-19 05:08:23 (418513): Guest Log: Detected user-configured HTTP proxy at http://localhost:3128 - will set in /etc/cvmfs/default.local
2024-06-19 05:09:48 (418513): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-19 05:09:48 (418513): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-19 05:09:48 (418513): Guest Log: 2.6.3.0 1528 1 29528 134035 4 1 3117205 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.161.84:3126 1
2024-06-19 05:09:48 (418513): Guest Log: copied the webapp to /var/www
2024-06-19 05:09:49 (418513): Guest Log: core_number=1
2024-06-19 05:09:49 (418513): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-19 05:09:49 (418513): Guest Log:  *** Starting ATLAS job. (PandaID=6236840275 taskID=38920995) ***
2024-06-19 06:46:00 (418513): Status Report: Elapsed Time: '6000.000000'
2024-06-19 06:46:00 (418513): Status Report: CPU Time: '5160.900000'
2024-06-19 08:25:00 (418513): Status Report: Elapsed Time: '12000.000000'
2024-06-19 08:25:00 (418513): Status Report: CPU Time: '11106.220000'
2024-06-19 10:04:01 (418513): Status Report: Elapsed Time: '18000.000000'
2024-06-19 10:04:01 (418513): Status Report: CPU Time: '17047.000000'
2024-06-19 11:43:01 (418513): Status Report: Elapsed Time: '24000.000000'
2024-06-19 11:43:01 (418513): Status Report: CPU Time: '22974.230000'
2024-06-19 13:22:02 (418513): Status Report: Elapsed Time: '30000.000000'
2024-06-19 13:22:02 (418513): Status Report: CPU Time: '28921.960000'
2024-06-19 15:01:03 (418513): Status Report: Elapsed Time: '36000.000000'
2024-06-19 15:01:03 (418513): Status Report: CPU Time: '34869.920000'
2024-06-19 16:40:03 (418513): Status Report: Elapsed Time: '42000.000000'
2024-06-19 16:40:03 (418513): Status Report: CPU Time: '40817.730000'
2024-06-19 18:19:04 (418513): Status Report: Elapsed Time: '48000.000000'
2024-06-19 18:19:04 (418513): Status Report: CPU Time: '46766.360000'
2024-06-19 19:58:04 (418513): Status Report: Elapsed Time: '54000.000000'
2024-06-19 19:58:04 (418513): Status Report: CPU Time: '52714.940000'
2024-06-19 21:37:05 (418513): Status Report: Elapsed Time: '60000.000000'
2024-06-19 21:37:05 (418513): Status Report: CPU Time: '58662.700000'
2024-06-19 23:16:06 (418513): Status Report: Elapsed Time: '66000.000000'
2024-06-19 23:16:06 (418513): Status Report: CPU Time: '64611.060000'
2024-06-20 00:55:06 (418513): Status Report: Elapsed Time: '72000.000000'
2024-06-20 00:55:06 (418513): Status Report: CPU Time: '70546.860000'
2024-06-20 02:34:07 (418513): Status Report: Elapsed Time: '78000.000000'
2024-06-20 02:34:07 (418513): Status Report: CPU Time: '76494.320000'
2024-06-20 04:13:07 (418513): Status Report: Elapsed Time: '84000.000000'
2024-06-20 04:13:07 (418513): Status Report: CPU Time: '82442.070000'
2024-06-20 05:52:08 (418513): Status Report: Elapsed Time: '90000.000000'
2024-06-20 05:52:08 (418513): Status Report: CPU Time: '88390.500000'
2024-06-20 07:31:09 (418513): Status Report: Elapsed Time: '96000.000000'
2024-06-20 07:31:09 (418513): Status Report: CPU Time: '94338.280000'
2024-06-20 09:10:09 (418513): Status Report: Elapsed Time: '102000.000000'
2024-06-20 09:10:09 (418513): Status Report: CPU Time: '100285.910000'
2024-06-20 09:23:22 (418513): Guest Log:  *** Job finished ***
2024-06-20 09:23:22 (418513): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-20 09:23:22 (418513): Guest Log: 2024-06-20 07:23:11,507 | INFO     | [data] queue_monitor thread has finished
2024-06-20 09:23:22 (418513): Guest Log: 2024-06-20 07:23:14,822 | INFO     | job.realtimelogging is not enabled
2024-06-20 09:23:22 (418513): Guest Log: 2024-06-20 07:23:15,824 | INFO     | [payload] run_realtimelog thread has finished
2024-06-20 09:23:22 (418513): Guest Log: 2024-06-20 07:23:16,227 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140643439892288)>', '<ExcThread(monitor, started 140642856462080)>']
2024-06-20 09:23:22 (418513): Guest Log: 2024-06-20 07:23:17,063 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-20 09:23:22 (418513): Guest Log: 2024-06-20 07:23:17,063 | INFO     | [monitor] control thread has ended
2024-06-20 09:23:22 (418513): Guest Log: 2024-06-20 07:23:21,232 | INFO     | all workflow threads have been joined
2024-06-20 09:23:22 (418513): Guest Log: 2024-06-20 07:23:21,233 | INFO     | end of generic workflow (traces error code: 0)
2024-06-20 09:23:22 (418513): Guest Log: 2024-06-20 07:23:21,233 | INFO     | traces error code: 0
2024-06-20 09:23:22 (418513): Guest Log: 2024-06-20 07:23:21,233 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-20 09:23:22 (418513): Guest Log: 2024-06-20 07:23:21,341 [wrapper] ==== pilot stdout END ====
2024-06-20 09:23:22 (418513): Guest Log: 2024-06-20 07:23:21,346 [wrapper] ==== wrapper stdout RESUME ====
2024-06-20 09:23:22 (418513): Guest Log: 2024-06-20 07:23:21,351 [wrapper] pilotpid: 6378
2024-06-20 09:23:22 (418513): Guest Log: 2024-06-20 07:23:21,356 [wrapper] Pilot exit status: 0
2024-06-20 09:23:22 (418513): Guest Log: 2024-06-20 07:23:21,417 [wrapper] pandaids: 6236840275
2024-06-20 09:23:22 (418513): Guest Log: 2024-06-20 07:23:21,449 [wrapper] cleanup supervisor_pilot  4428 6379
2024-06-20 09:23:22 (418513): Guest Log: 2024-06-20 07:23:21,455 [wrapper] Test setup, not cleaning
2024-06-20 09:23:22 (418513): Guest Log: 2024-06-20 07:23:21,460 [wrapper] ==== wrapper stdout END ====
2024-06-20 09:23:22 (418513): Guest Log: 2024-06-20 07:23:21,464 [wrapper] ==== wrapper stderr END ====
2024-06-20 09:23:22 (418513): Guest Log: 2024-06-20 07:23:21,474 [wrapper] apfmon messages muted
2024-06-20 09:23:22 (418513): Guest Log:  *** Error codes and diagnostics ***
2024-06-20 09:23:22 (418513): Guest Log:     "exeErrorCode": 0,
2024-06-20 09:23:22 (418513): Guest Log:     "exeErrorDiag": "",
2024-06-20 09:23:22 (418513): Guest Log:     "pilotErrorCode": 0,
2024-06-20 09:23:22 (418513): Guest Log:     "pilotErrorDiag": "",
2024-06-20 09:23:22 (418513): Guest Log:  *** Listing of results directory ***
2024-06-20 09:23:22 (418513): Guest Log: total 380864
2024-06-20 09:23:22 (418513): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 18 21:17 pilot3.tar.gz
2024-06-20 09:23:22 (418513): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 18 21:34 queuedata.json
2024-06-20 09:23:22 (418513): Guest Log: -rwx------. 1 atlas atlas     32308 Jun 18 21:34 runpilot2-wrapper.sh
2024-06-20 09:23:22 (418513): Guest Log: -rw-r--r--. 1 atlas atlas      9682 Jun 19 03:08 init_data.xml
2024-06-20 09:23:22 (418513): Guest Log: -rw-r--r--. 1 atlas atlas    482521 Jun 19 03:08 input.tar.gz
2024-06-20 09:23:22 (418513): Guest Log: -rw-r--r--. 1 atlas atlas     17537 Jun 19 03:08 start_atlas.sh
2024-06-20 09:23:22 (418513): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 19 03:08 EVNT.38776180._000863.pool.root.1 -> /data/./ATLAS.root_0
2024-06-20 09:23:22 (418513): Guest Log: -rw-r--r--. 1 atlas atlas      2615 Jun 19 03:09 pandaJob.out
2024-06-20 09:23:22 (418513): Guest Log: -rw-------. 1 atlas atlas       456 Jun 19 03:09 setup.sh.local
2024-06-20 09:23:22 (418513): Guest Log: -rw-------. 1 atlas atlas   1023127 Jun 19 03:11 agis_schedconf.cvmfs.json
2024-06-20 09:23:22 (418513): Guest Log: -rw-------. 1 atlas atlas   1317943 Jun 19 03:11 cric_ddmendpoints.json
2024-06-20 09:23:22 (418513): Guest Log: drwx------. 4 atlas atlas      4096 Jun 19 03:11 pilot3
2024-06-20 09:23:22 (418513): Guest Log: -rw-------. 1 atlas atlas 349641986 Jun 20 07:21 HITS.38920995._055881.pool.root.1
2024-06-20 09:23:22 (418513): Guest Log: -rw-------. 1 atlas atlas      1022 Jun 20 07:22 memory_monitor_summary.json
2024-06-20 09:23:22 (418513): Guest Log: -rw-------. 1 atlas atlas         0 Jun 20 07:22 agis_ddmendpoints.agis.ALL.json
2024-06-20 09:23:22 (418513): Guest Log: -rw-------. 1 atlas atlas   1963806 Jun 20 07:22 log.38920995._055881.job.log.tgz.1
2024-06-20 09:23:22 (418513): Guest Log: -rw-------. 1 atlas atlas        95 Jun 20 07:23 pilot_heartbeat.json
2024-06-20 09:23:22 (418513): Guest Log: -rw-------. 1 atlas atlas      7729 Jun 20 07:23 heartbeat.json
2024-06-20 09:23:22 (418513): Guest Log: -rw-------. 1 atlas atlas      4343 Jun 20 07:23 pilotlog.txt
2024-06-20 09:23:22 (418513): Guest Log: -rw-------. 1 atlas atlas  16485067 Jun 20 07:23 log.38920995._055881.job.log.1
2024-06-20 09:23:22 (418513): Guest Log: -rw-------. 1 atlas atlas       357 Jun 20 07:23 output.list
2024-06-20 09:23:22 (418513): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 20 07:23 runtime_log
2024-06-20 09:23:22 (418513): Guest Log: -rw-------. 1 atlas atlas  18472960 Jun 20 07:23 result.tar.gz
2024-06-20 09:23:22 (418513): Guest Log: -rw-------. 1 atlas atlas       649 Jun 20 07:23 t6vMDmpevd5n7Olcko1bjSoqABFKDmABFKDmOtvXDmVPqKDmTgERdm.diag
2024-06-20 09:23:22 (418513): Guest Log: -rw-r--r--. 1 atlas atlas     11144 Jun 20 07:23 runtime_log.err
2024-06-20 09:23:22 (418513): Guest Log: Looking for outputfile HITS.38920995._055881.pool.root.1
2024-06-20 09:23:22 (418513): Guest Log: HITS file was successfully produced
2024-06-20 09:23:22 (418513): Guest Log: -rw-------. 1 atlas atlas 349641986 Jun 20 07:21 /home/atlas/RunAtlas/HITS.38920995._055881.pool.root.1
2024-06-20 09:23:22 (418513): Guest Log: Successfully finished the ATLAS job!
2024-06-20 09:23:22 (418513): Guest Log: Copying the results back to the shared directory!
2024-06-20 09:23:22 (418513): Guest Log:  *** Contents of shared directory: ***
2024-06-20 09:23:22 (418513): Guest Log: total 636992
2024-06-20 09:23:22 (418513): Guest Log: -rw-r--r--. 1 root root 633285817 Jun 19 03:06 ATLAS.root_0
2024-06-20 09:23:22 (418513): Guest Log: -rw-r--r--. 1 root root      9682 Jun 19 03:06 init_data.xml
2024-06-20 09:23:22 (418513): Guest Log: -rw-r--r--. 1 root root    482521 Jun 19 03:06 input.tar.gz
2024-06-20 09:23:22 (418513): Guest Log: -rw-r--r--. 1 root root  18472960 Jun 20 07:23 result.tar.gz
2024-06-20 09:23:22 (418513): Guest Log: -rw-r--r--. 1 root root     17537 Jun 19 03:06 start_atlas.sh
2024-06-20 09:23:22 (418513): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-20 09:23:22 (418513): VM Completion File Detected.
2024-06-20 09:23:22 (418513): Powering off VM.
2024-06-20 09:23:23 (418513): Successfully stopped VM.
2024-06-20 09:23:23 (418513): Deregistering VM. (boinc_9befc243fd9c4dee, slot#2)
2024-06-20 09:23:23 (418513): Removing network bandwidth throttle group from VM.
2024-06-20 09:23:23 (418513): Removing VM from VirtualBox.
09:23:28 (418513): called boinc_finish(0)

</stderr_txt>
]]>

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