Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-23 06:48:35 (13612): Detected: vboxwrapper 26206
2024-06-23 06:48:35 (13612): Detected: BOINC client v7.24.1
2024-06-23 06:48:35 (13612): Detected: VirtualBox VboxManage Interface (Version: 7.0.18)
2024-06-23 06:48:36 (13612): Successfully copied 'init_data.xml' to the shared directory.
2024-06-23 06:48:36 (13612): Create VM. (boinc_78c1cf8cc0b09cc4, slot#1)
2024-06-23 06:48:37 (13612): Setting Memory Size for VM. (4800MB)
2024-06-23 06:48:37 (13612): Setting CPU Count for VM. (8)
2024-06-23 06:48:37 (13612): Setting Chipset Options for VM.
2024-06-23 06:48:37 (13612): Setting Graphics Controller Options for VM.
2024-06-23 06:48:38 (13612): Setting Boot Options for VM.
2024-06-23 06:48:38 (13612): Setting Network Configuration for NAT.
2024-06-23 06:48:38 (13612): Enabling VM Network Access.
2024-06-23 06:48:38 (13612): Disabling USB Support for VM.
2024-06-23 06:48:39 (13612): Disabling COM Port Support for VM.
2024-06-23 06:48:39 (13612): Disabling LPT Port Support for VM.
2024-06-23 06:48:39 (13612): Disabling Audio Support for VM.
2024-06-23 06:48:39 (13612): Disabling Clipboard Support for VM.
2024-06-23 06:48:40 (13612): Disabling Drag and Drop Support for VM.
2024-06-23 06:48:40 (13612): Adding storage controller(s) to VM.
2024-06-23 06:48:40 (13612): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-23 06:48:41 (13612): Adding VirtualBox Guest Additions to VM.
2024-06-23 06:48:41 (13612): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-23 06:48:41 (13612): forwarding host port 65346 to guest port 80
2024-06-23 06:48:41 (13612): Enabling remote desktop for VM.
2024-06-23 06:48:42 (13612): Required extension pack not installed, remote desktop not enabled.
2024-06-23 06:48:42 (13612): Enabling shared directory for VM.
2024-06-23 06:48:42 (13612): Starting VM using VBoxManage interface. (boinc_78c1cf8cc0b09cc4, slot#1)
2024-06-23 06:48:48 (13612): Successfully started VM. (PID = '11788')
2024-06-23 06:48:48 (13612): Reporting VM Process ID to BOINC.
2024-06-23 06:48:48 (13612): Guest Log: BIOS: VirtualBox 7.0.18
2024-06-23 06:48:48 (13612): Guest Log: CPUID EDX: 0x178bfbff
2024-06-23 06:48:48 (13612): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-23 06:48:48 (13612): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-23 06:48:48 (13612): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-23 06:48:48 (13612): Detected: Web Application Enabled (http://localhost:65346)
2024-06-23 06:48:48 (13612): Preference change detected
2024-06-23 06:48:48 (13612): Setting CPU throttle for VM. (100%)
2024-06-23 06:48:48 (13612): Setting network throttle for VM. (3090KB)
2024-06-23 06:48:49 (13612): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-23 06:48:50 (13612): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-23 06:48:50 (13612): Guest Log: BIOS: Booting from Hard Disk...
2024-06-23 06:48:53 (13612): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-23 06:48:53 (13612): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-23 06:48:53 (13612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-23 06:48:53 (13612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-23 06:48:53 (13612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-23 06:48:53 (13612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-23 06:48:53 (13612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-23 06:48:53 (13612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-23 06:48:53 (13612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-23 06:48:53 (13612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-23 06:48:53 (13612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-23 06:48:53 (13612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-23 06:48:53 (13612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-23 06:48:53 (13612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-23 06:48:53 (13612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-23 06:48:53 (13612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-23 06:48:53 (13612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-23 06:48:53 (13612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-23 06:48:53 (13612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-23 06:48:53 (13612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-23 06:48:53 (13612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-23 06:48:53 (13612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-23 06:48:53 (13612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-23 06:48:53 (13612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-23 06:48:53 (13612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-23 06:48:53 (13612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-23 06:48:53 (13612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-23 06:48:53 (13612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-23 06:48:53 (13612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-23 06:48:53 (13612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-23 06:48:53 (13612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-23 06:48:53 (13612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-23 06:49:00 (13612): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-23 06:49:00 (13612): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-23 06:49:29 (13612): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-23 06:49:29 (13612): Guest Log: 00:00:00.000135 main     Log opened 2024-06-23T06:49:26.625766000Z
2024-06-23 06:49:29 (13612): Guest Log: 00:00:00.000211 main     OS Product: Linux
2024-06-23 06:49:29 (13612): Guest Log: 00:00:00.000234 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-23 06:49:29 (13612): Guest Log: 00:00:00.000252 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-23 06:49:29 (13612): Guest Log: 00:00:00.000270 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-23 06:49:29 (13612): Guest Log: 00:00:00.000270 main     Process ID: 1370
2024-06-23 06:49:29 (13612): Guest Log: 00:00:00.000271 main     Package type: LINUX_64BITS_GENERIC
2024-06-23 06:49:29 (13612): Guest Log: 00:00:00.000721 main     5.2.32 r132073 started. Verbose level = 0
2024-06-23 06:49:29 (13612): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-23 06:49:29 (13612): Guest Log: [INFO] Mounting shared directory
2024-06-23 06:49:29 (13612): Guest Log: [INFO] Checking for init_data.xml
2024-06-23 06:49:39 (13612): Guest Log: 00:00:10.004333 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 788 057 236 000ns (GuestNow=1 719 114 578 571 341 000 ns GuestLast=1 719 125 366 628 577 000 ns fSetTimeLastLoop=true )
2024-06-23 06:50:31 (13612): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-23 06:50:31 (13612): Guest Log: [INFO] Detected branch: prod
2024-06-23 06:50:31 (13612): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-23 06:50:31 (13612): Guest Log: Copying input files
2024-06-23 06:50:35 (13612): Guest Log: Copied input files into RunAtlas.
2024-06-23 06:50:35 (13612): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-06-23 06:50:35 (13612): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-06-23 06:50:35 (13612): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-06-23 06:50:35 (13612): Guest Log: Further information can be found at the LHC@home message board.
2024-06-23 06:51:32 (13612): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-23 06:51:33 (13612): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-23 06:51:33 (13612): Guest Log: 2.6.3.0 1669 1 30152 134189 4 1 3117206 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-06-23 06:51:36 (13612): Guest Log: copied the webapp to /var/www
2024-06-23 06:51:36 (13612): Guest Log: ATHENA_PROC_NUMBER=8
2024-06-23 06:51:36 (13612): Guest Log: ATHENA_CORE_NUMBER=8
2024-06-23 06:51:36 (13612): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-23 06:51:36 (13612): Guest Log:  *** Starting ATLAS job. (PandaID=6236819802 taskID=38921007) ***
2024-06-23 08:30:01 (13612): Status Report: Elapsed Time: '6000.000000'
2024-06-23 08:30:01 (13612): Status Report: CPU Time: '38638.750000'
2024-06-23 10:12:00 (13612): Status Report: Elapsed Time: '12000.000000'
2024-06-23 10:12:00 (13612): Status Report: CPU Time: '86856.203125'
2024-06-23 10:37:46 (13612): VM state change detected. (old = 'running', new = 'paused')
2024-06-23 11:40:10 (13612): VM state change detected. (old = 'paused', new = 'running')
2024-06-23 11:40:11 (13612): Guest Log: 03:48:13.233698 timesync vgsvcTimeSyncWorker: Radical host time change: 3 750 844 000 000ns (HostNow=1 719 131 987 679 000 000 ns HostLast=1 719 128 236 835 000 000 ns)
2024-06-23 11:40:21 (13612): Guest Log: 03:48:23.235631 timesync vgsvcTimeSyncWorker: Radical guest time change: 3 735 880 456 000ns (GuestNow=1 719 131 997 681 063 000 ns GuestLast=1 719 128 261 800 607 000 ns fSetTimeLastLoop=true )
2024-06-23 12:55:44 (13612): Status Report: Elapsed Time: '18000.000000'
2024-06-23 12:55:44 (13612): Status Report: CPU Time: '134729.781250'
2024-06-23 14:30:53 (13612): Guest Log:  *** Job finished ***
2024-06-23 14:30:53 (13612): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-23 14:30:53 (13612): Guest Log: 2024-06-23 11:30:19,605 | INFO     | [data] queue_monitor thread has finished
2024-06-23 14:30:53 (13612): Guest Log: 2024-06-23 11:30:21,959 | INFO     | job.realtimelogging is not enabled
2024-06-23 14:30:53 (13612): Guest Log: 2024-06-23 11:30:22,960 | INFO     | [payload] run_realtimelog thread has finished
2024-06-23 14:30:53 (13612): Guest Log: 2024-06-23 11:30:23,268 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140705734793024)>', '<ExcThread(monitor, started 140704831481600)>']
2024-06-23 14:30:53 (13612): Guest Log: 2024-06-23 11:30:24,109 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-23 14:30:53 (13612): Guest Log: 2024-06-23 11:30:24,109 | INFO     | [monitor] control thread has ended
2024-06-23 14:30:53 (13612): Guest Log: 2024-06-23 11:30:28,269 | INFO     | all workflow threads have been joined
2024-06-23 14:30:53 (13612): Guest Log: 2024-06-23 11:30:28,269 | INFO     | end of generic workflow (traces error code: 0)
2024-06-23 14:30:53 (13612): Guest Log: 2024-06-23 11:30:28,269 | INFO     | traces error code: 0
2024-06-23 14:30:53 (13612): Guest Log: 2024-06-23 11:30:28,269 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-23 14:30:53 (13612): Guest Log: 2024-06-23 11:30:28,417 [wrapper] ==== pilot stdout END ====
2024-06-23 14:30:53 (13612): Guest Log: 2024-06-23 11:30:28,420 [wrapper] ==== wrapper stdout RESUME ====
2024-06-23 14:30:53 (13612): Guest Log: 2024-06-23 11:30:28,423 [wrapper] pilotpid: 6608
2024-06-23 14:30:53 (13612): Guest Log: 2024-06-23 11:30:28,426 [wrapper] Pilot exit status: 0
2024-06-23 14:30:53 (13612): Guest Log: 2024-06-23 11:30:28,518 [wrapper] pandaids: 6236819802
2024-06-23 14:30:53 (13612): Guest Log: 2024-06-23 11:30:28,542 [wrapper] cleanup supervisor_pilot 30551 6609
2024-06-23 14:30:53 (13612): Guest Log: 2024-06-23 11:30:28,545 [wrapper] Test setup, not cleaning
2024-06-23 14:30:53 (13612): Guest Log: 2024-06-23 11:30:28,553 [wrapper] ==== wrapper stdout END ====
2024-06-23 14:30:53 (13612): Guest Log: 2024-06-23 11:30:28,557 [wrapper] ==== wrapper stderr END ====
2024-06-23 14:30:53 (13612): Guest Log: 2024-06-23 11:30:28,564 [wrapper] apfmon messages muted
2024-06-23 14:30:53 (13612): Guest Log:  *** Error codes and diagnostics ***
2024-06-23 14:30:53 (13612): Guest Log:     "exeErrorCode": 0,
2024-06-23 14:30:53 (13612): Guest Log:     "exeErrorDiag": "",
2024-06-23 14:30:53 (13612): Guest Log:     "pilotErrorCode": 0,
2024-06-23 14:30:53 (13612): Guest Log:     "pilotErrorDiag": "",
2024-06-23 14:30:53 (13612): Guest Log:  *** Listing of results directory ***
2024-06-23 14:30:53 (13612): Guest Log: total 349668
2024-06-23 14:30:53 (13612): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 18 21:17 pilot3.tar.gz
2024-06-23 14:30:53 (13612): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 18 21:17 queuedata.json
2024-06-23 14:30:53 (13612): Guest Log: -rwx------. 1 atlas atlas     32308 Jun 18 21:18 runpilot2-wrapper.sh
2024-06-23 14:30:53 (13612): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Jun 23 03:50 start_atlas.sh
2024-06-23 14:30:53 (13612): Guest Log: -rwxr-xr-x. 1 atlas atlas    482542 Jun 23 03:50 input.tar.gz
2024-06-23 14:30:53 (13612): Guest Log: -rwxr-xr-x. 1 atlas atlas      9290 Jun 23 03:50 init_data.xml
2024-06-23 14:30:53 (13612): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 23 03:50 EVNT.38776201._000567.pool.root.1 -> /data/./ATLAS.root_0
2024-06-23 14:30:53 (13612): Guest Log: -rw-r--r--. 1 atlas atlas      2631 Jun 23 03:51 pandaJob.out
2024-06-23 14:30:53 (13612): Guest Log: -rw-------. 1 atlas atlas       424 Jun 23 03:51 setup.sh.local
2024-06-23 14:30:53 (13612): Guest Log: -rw-------. 1 atlas atlas   1026054 Jun 23 03:53 agis_schedconf.cvmfs.json
2024-06-23 14:30:53 (13612): Guest Log: -rw-------. 1 atlas atlas   1321363 Jun 23 03:53 cric_ddmendpoints.json
2024-06-23 14:30:53 (13612): Guest Log: drwx------. 4 atlas atlas      4096 Jun 23 03:53 pilot3
2024-06-23 14:30:53 (13612): Guest Log: -rw-------. 1 atlas atlas 349278440 Jun 23 11:29 HITS.38921007._047997.pool.root.1
2024-06-23 14:30:53 (13612): Guest Log: -rw-------. 1 atlas atlas        97 Jun 23 11:29 pilot_heartbeat.json
2024-06-23 14:30:53 (13612): Guest Log: -rw-------. 1 atlas atlas      1028 Jun 23 11:29 memory_monitor_summary.json
2024-06-23 14:30:53 (13612): Guest Log: -rw-------. 1 atlas atlas         0 Jun 23 11:29 agis_ddmendpoints.agis.ALL.json
2024-06-23 14:30:53 (13612): Guest Log: -rw-------. 1 atlas atlas    486092 Jun 23 11:29 log.38921007._047997.job.log.tgz.1
2024-06-23 14:30:53 (13612): Guest Log: -rw-------. 1 atlas atlas      7711 Jun 23 11:30 heartbeat.json
2024-06-23 14:30:53 (13612): Guest Log: -rw-------. 1 atlas atlas      4466 Jun 23 11:30 pilotlog.txt
2024-06-23 14:30:53 (13612): Guest Log: -rw-------. 1 atlas atlas   2170496 Jun 23 11:30 log.38921007._047997.job.log.1
2024-06-23 14:30:53 (13612): Guest Log: -rw-------. 1 atlas atlas       357 Jun 23 11:30 output.list
2024-06-23 14:30:53 (13612): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 23 11:30 runtime_log
2024-06-23 14:30:53 (13612): Guest Log: -rw-------. 1 atlas atlas   2672640 Jun 23 11:30 result.tar.gz
2024-06-23 14:30:53 (13612): Guest Log: -rw-r--r--. 1 atlas atlas     10943 Jun 23 11:30 runtime_log.err
2024-06-23 14:30:53 (13612): Guest Log: -rw-------. 1 atlas atlas       653 Jun 23 11:30 nkaKDmfOvd5n9Rq4apOajLDm4fhM0noT9bVo2ijZDmJNWKDmgripFn.diag
2024-06-23 14:30:53 (13612): Guest Log: Looking for outputfile HITS.38921007._047997.pool.root.1
2024-06-23 14:30:53 (13612): Guest Log: HITS file was successfully produced
2024-06-23 14:30:53 (13612): Guest Log: -rw-------. 1 atlas atlas 349278440 Jun 23 11:29 /home/atlas/RunAtlas/HITS.38921007._047997.pool.root.1
2024-06-23 14:30:55 (13612): Guest Log: Successfully finished the ATLAS job!
2024-06-23 14:30:55 (13612): Guest Log: Copying the results back to the shared directory!
2024-06-23 14:30:55 (13612): Guest Log:  *** Contents of shared directory: ***
2024-06-23 14:30:55 (13612): Guest Log: total 917284
2024-06-23 14:30:55 (13612): Guest Log: -rwxrwxrwx. 1 root root 586821875 Jun 23 03:48 ATLAS.root_0
2024-06-23 14:30:55 (13612): Guest Log: -rwxrwxrwx. 1 root root 349278440 Jun 23  2024 HITS.pool.root.1
2024-06-23 14:30:55 (13612): Guest Log: -rwxrwxrwx. 1 root root      9290 Jun 23 03:48 init_data.xml
2024-06-23 14:30:55 (13612): Guest Log: -rwxrwxrwx. 1 root root    482542 Jun 19 03:22 input.tar.gz
2024-06-23 14:30:55 (13612): Guest Log: -rwxrwxrwx. 1 root root   2672640 Jun 23  2024 result.tar.gz
2024-06-23 14:30:55 (13612): Guest Log: -rwxrwxrwx. 1 root root     17537 Jun 19 03:22 start_atlas.sh
2024-06-23 14:30:55 (13612): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-23 14:30:55 (13612): VM Completion File Detected.
2024-06-23 14:30:55 (13612): Powering off VM.
2024-06-23 14:30:56 (13612): Successfully stopped VM.
2024-06-23 14:30:56 (13612): Deregistering VM. (boinc_78c1cf8cc0b09cc4, slot#1)
2024-06-23 14:30:57 (13612): Removing network bandwidth throttle group from VM.
2024-06-23 14:30:57 (13612): Removing VM from VirtualBox.
14:31:02 (13612): called boinc_finish(0)

</stderr_txt>
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