Stderr output

<core_client_version>7.16.5</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-21 17:57:41 (2900): Detected: vboxwrapper 26206
2024-06-21 17:57:41 (2900): Detected: BOINC client v7.16.5
2024-06-21 17:57:42 (2900): Detected: VirtualBox VboxManage Interface (Version: 5.2.44)
2024-06-21 17:57:42 (2900): Successfully copied 'init_data.xml' to the shared directory.
2024-06-21 17:57:43 (2900): Create VM. (boinc_578482f4af6b208c, slot#4)
2024-06-21 17:57:43 (2900): Setting Memory Size for VM. (4400MB)
2024-06-21 17:57:43 (2900): Setting CPU Count for VM. (4)
2024-06-21 17:57:44 (2900): Setting Chipset Options for VM.
2024-06-21 17:57:44 (2900): Setting Graphics Controller Options for VM.
2024-06-21 17:57:44 (2900): Setting Boot Options for VM.
2024-06-21 17:57:44 (2900): Setting Network Configuration for NAT.
2024-06-21 17:57:45 (2900): Enabling VM Network Access.
2024-06-21 17:57:45 (2900): Disabling USB Support for VM.
2024-06-21 17:57:45 (2900): Disabling COM Port Support for VM.
2024-06-21 17:57:45 (2900): Disabling LPT Port Support for VM.
2024-06-21 17:57:46 (2900): Disabling Audio Support for VM.
2024-06-21 17:57:46 (2900): Disabling Clipboard Support for VM.
2024-06-21 17:57:46 (2900): Disabling Drag and Drop Support for VM.
2024-06-21 17:57:46 (2900): Adding storage controller(s) to VM.
2024-06-21 17:57:47 (2900): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-21 17:57:47 (2900): Adding VirtualBox Guest Additions to VM.
2024-06-21 17:57:47 (2900): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-21 17:57:48 (2900): forwarding host port 53128 to guest port 80
2024-06-21 17:57:48 (2900): Enabling remote desktop for VM.
2024-06-21 17:57:48 (2900): Enabling shared directory for VM.
2024-06-21 17:57:49 (2900): Starting VM using VBoxManage interface. (boinc_578482f4af6b208c, slot#4)
2024-06-21 17:57:53 (2900): Successfully started VM. (PID = '13396')
2024-06-21 17:57:53 (2900): Reporting VM Process ID to BOINC.
2024-06-21 17:57:53 (2900): Guest Log: BIOS: VirtualBox 5.2.44
2024-06-21 17:57:53 (2900): Guest Log: CPUID EDX: 0x178bfbff
2024-06-21 17:57:53 (2900): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-21 17:57:53 (2900): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-21 17:57:53 (2900): Detected: Web Application Enabled (http://localhost:53128)
2024-06-21 17:57:53 (2900): Detected: Remote Desktop Enabled (localhost:53129)
2024-06-21 17:57:53 (2900): Preference change detected
2024-06-21 17:57:53 (2900): Setting CPU throttle for VM. (100%)
2024-06-21 17:57:53 (2900): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-21 17:57:55 (2900): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-21 17:57:55 (2900): Guest Log: BIOS: Booting from Hard Disk...
2024-06-21 17:57:58 (2900): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-21 17:57:58 (2900): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-21 17:57:58 (2900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-21 17:57:58 (2900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-21 17:57:58 (2900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-21 17:57:58 (2900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-21 17:57:58 (2900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-21 17:57:58 (2900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-21 17:57:58 (2900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-21 17:57:58 (2900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-21 17:57:58 (2900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-21 17:57:58 (2900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-21 17:57:58 (2900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-21 17:57:58 (2900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-21 17:57:58 (2900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-21 17:57:58 (2900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-21 17:57:58 (2900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-21 17:57:58 (2900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-21 17:57:58 (2900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-21 17:57:58 (2900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-21 17:57:58 (2900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-21 17:57:58 (2900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-21 17:57:58 (2900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-21 17:57:58 (2900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-21 17:57:58 (2900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-21 17:57:58 (2900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-21 17:57:58 (2900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-21 17:57:58 (2900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-21 17:57:58 (2900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-21 17:57:58 (2900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-21 17:57:58 (2900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-21 17:57:58 (2900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-21 17:58:04 (2900): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-21 17:58:04 (2900): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-21 17:58:09 (2900): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-21 17:58:09 (2900): Guest Log: 00:00:00.000211 main     Log opened 2024-06-21T17:58:07.928985000Z
2024-06-21 17:58:09 (2900): Guest Log: 00:00:00.000317 main     OS Product: Linux
2024-06-21 17:58:09 (2900): Guest Log: 00:00:00.000349 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-21 17:58:09 (2900): Guest Log: 00:00:00.000372 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-21 17:58:09 (2900): Guest Log: 00:00:00.000393 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-21 17:58:09 (2900): Guest Log: 00:00:00.000393 main     Process ID: 1298
2024-06-21 17:58:09 (2900): Guest Log: 00:00:00.000394 main     Package type: LINUX_64BITS_GENERIC
2024-06-21 17:58:09 (2900): Guest Log: 00:00:00.002102 main     5.2.32 r132073 started. Verbose level = 0
2024-06-21 17:58:09 (2900): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-21 17:58:09 (2900): Guest Log: [INFO] Mounting shared directory
2024-06-21 17:58:09 (2900): Guest Log: [INFO] Checking for init_data.xml
2024-06-21 17:58:19 (2900): Guest Log: 00:00:10.008203 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 788 856 111 000ns (GuestNow=1 718 981 899 078 904 000 ns GuestLast=1 718 992 687 935 015 000 ns fSetTimeLastLoop=true )
2024-06-21 17:59:33 (2900): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-21 17:59:33 (2900): Guest Log: [INFO] Detected branch: prod
2024-06-21 17:59:58 (2900): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-21 17:59:58 (2900): Guest Log: Copying input files
2024-06-21 18:00:02 (2900): Guest Log: Copied input files into RunAtlas.
2024-06-21 18:00:02 (2900): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-06-21 18:00:02 (2900): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-06-21 18:00:02 (2900): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-06-21 18:00:02 (2900): Guest Log: Further information can be found at the LHC@home message board.
2024-06-21 18:00:11 (2900): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-21 18:00:11 (2900): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-21 18:00:11 (2900): Guest Log: 2.6.3.0 1596 1 30316 134131 4 1 3119736 4096000 0 65024 0 0 n/a 1141 2831 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-06-21 18:00:12 (2900): Guest Log: copied the webapp to /var/www
2024-06-21 18:00:12 (2900): Guest Log: ATHENA_PROC_NUMBER=4
2024-06-21 18:00:12 (2900): Guest Log: ATHENA_CORE_NUMBER=4
2024-06-21 18:00:12 (2900): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-21 18:00:12 (2900): Guest Log:  *** Starting ATLAS job. (PandaID=6236689123 taskID=38921007) ***
2024-06-21 19:37:56 (2900): Status Report: Elapsed Time: '6000.000000'
2024-06-21 19:37:56 (2900): Status Report: CPU Time: '15888.281250'
2024-06-21 21:18:00 (2900): Status Report: Elapsed Time: '12000.000000'
2024-06-21 21:18:00 (2900): Status Report: CPU Time: '37495.281250'
2024-06-21 22:58:04 (2900): Status Report: Elapsed Time: '18000.000000'
2024-06-21 22:58:04 (2900): Status Report: CPU Time: '60476.984375'
2024-06-22 00:38:07 (2900): Status Report: Elapsed Time: '24000.000000'
2024-06-22 00:38:07 (2900): Status Report: CPU Time: '83309.375000'
2024-06-22 02:18:11 (2900): Status Report: Elapsed Time: '30000.000000'
2024-06-22 02:18:11 (2900): Status Report: CPU Time: '105196.265625'
2024-06-22 03:58:20 (2900): Status Report: Elapsed Time: '36000.000000'
2024-06-22 03:58:20 (2900): Status Report: CPU Time: '126463.890625'
2024-06-22 05:38:24 (2900): Status Report: Elapsed Time: '42000.000000'
2024-06-22 05:38:24 (2900): Status Report: CPU Time: '145097.078125'
2024-06-22 07:18:27 (2900): Status Report: Elapsed Time: '48000.000000'
2024-06-22 07:18:27 (2900): Status Report: CPU Time: '167010.593750'
2024-06-22 08:14:13 (2900): Guest Log:  *** Job finished ***
2024-06-22 08:14:13 (2900): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-22 08:14:13 (2900): Guest Log: 2024-06-22 05:13:59,292 | INFO     | [data] queue_monitor thread has finished
2024-06-22 08:14:13 (2900): Guest Log: 2024-06-22 05:14:06,108 | INFO     | job.realtimelogging is not enabled
2024-06-22 08:14:13 (2900): Guest Log: 2024-06-22 05:14:07,109 | INFO     | [payload] run_realtimelog thread has finished
2024-06-22 08:14:13 (2900): Guest Log: 2024-06-22 05:14:07,271 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139990529582912)>', '<ExcThread(monitor, started 139989912360704)>']
2024-06-22 08:14:13 (2900): Guest Log: 2024-06-22 05:14:07,598 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-22 08:14:13 (2900): Guest Log: 2024-06-22 05:14:07,598 | INFO     | [monitor] control thread has ended
2024-06-22 08:14:13 (2900): Guest Log: 2024-06-22 05:14:12,303 | INFO     | all workflow threads have been joined
2024-06-22 08:14:13 (2900): Guest Log: 2024-06-22 05:14:12,303 | INFO     | end of generic workflow (traces error code: 0)
2024-06-22 08:14:13 (2900): Guest Log: 2024-06-22 05:14:12,303 | INFO     | traces error code: 0
2024-06-22 08:14:13 (2900): Guest Log: 2024-06-22 05:14:12,303 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-22 08:14:13 (2900): Guest Log: 2024-06-22 05:14:12,404 [wrapper] ==== pilot stdout END ====
2024-06-22 08:14:13 (2900): Guest Log: 2024-06-22 05:14:12,409 [wrapper] ==== wrapper stdout RESUME ====
2024-06-22 08:14:13 (2900): Guest Log: 2024-06-22 05:14:12,415 [wrapper] pilotpid: 6534
2024-06-22 08:14:13 (2900): Guest Log: 2024-06-22 05:14:12,420 [wrapper] Pilot exit status: 0
2024-06-22 08:14:13 (2900): Guest Log: 2024-06-22 05:14:12,493 [wrapper] pandaids: 6236689123
2024-06-22 08:14:13 (2900): Guest Log: 2024-06-22 05:14:12,526 [wrapper] cleanup supervisor_pilot  7385 6535
2024-06-22 08:14:13 (2900): Guest Log: 2024-06-22 05:14:12,534 [wrapper] Test setup, not cleaning
2024-06-22 08:14:13 (2900): Guest Log: 2024-06-22 05:14:12,538 [wrapper] ==== wrapper stdout END ====
2024-06-22 08:14:13 (2900): Guest Log: 2024-06-22 05:14:12,543 [wrapper] ==== wrapper stderr END ====
2024-06-22 08:14:13 (2900): Guest Log: 2024-06-22 05:14:12,554 [wrapper] apfmon messages muted
2024-06-22 08:14:13 (2900): Guest Log:  *** Error codes and diagnostics ***
2024-06-22 08:14:13 (2900): Guest Log:     "exeErrorCode": 0,
2024-06-22 08:14:13 (2900): Guest Log:     "exeErrorDiag": "",
2024-06-22 08:14:13 (2900): Guest Log:     "pilotErrorCode": 0,
2024-06-22 08:14:13 (2900): Guest Log:     "pilotErrorDiag": "",
2024-06-22 08:14:13 (2900): Guest Log:  *** Listing of results directory ***
2024-06-22 08:14:13 (2900): Guest Log: total 359068
2024-06-22 08:14:13 (2900): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 18 19:30 pilot3.tar.gz
2024-06-22 08:14:13 (2900): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 18 19:42 queuedata.json
2024-06-22 08:14:13 (2900): Guest Log: -rwx------. 1 atlas atlas     32308 Jun 18 19:42 runpilot2-wrapper.sh
2024-06-22 08:14:13 (2900): Guest Log: -rwxr-xr-x. 1 atlas atlas      8879 Jun 21 15:00 init_data.xml
2024-06-22 08:14:13 (2900): Guest Log: -rwxr-xr-x. 1 atlas atlas    482535 Jun 21 15:00 input.tar.gz
2024-06-22 08:14:13 (2900): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Jun 21 15:00 start_atlas.sh
2024-06-22 08:14:13 (2900): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 21 15:00 EVNT.38776201._000612.pool.root.1 -> /data/./ATLAS.root_0
2024-06-22 08:14:13 (2900): Guest Log: -rw-r--r--. 1 atlas atlas      2631 Jun 21 15:00 pandaJob.out
2024-06-22 08:14:13 (2900): Guest Log: -rw-------. 1 atlas atlas       424 Jun 21 15:00 setup.sh.local
2024-06-22 08:14:13 (2900): Guest Log: -rw-------. 1 atlas atlas   1022991 Jun 21 15:04 agis_schedconf.cvmfs.json
2024-06-22 08:14:13 (2900): Guest Log: -rw-------. 1 atlas atlas   1321251 Jun 21 15:04 cric_ddmendpoints.json
2024-06-22 08:14:13 (2900): Guest Log: drwx------. 4 atlas atlas      4096 Jun 21 15:04 pilot3
2024-06-22 08:14:13 (2900): Guest Log: -rw-------. 1 atlas atlas 351608630 Jun 22 05:12 HITS.38921007._047898.pool.root.1
2024-06-22 08:14:13 (2900): Guest Log: -rw-------. 1 atlas atlas      1031 Jun 22 05:13 memory_monitor_summary.json
2024-06-22 08:14:13 (2900): Guest Log: -rw-------. 1 atlas atlas         0 Jun 22 05:13 agis_ddmendpoints.agis.ALL.json
2024-06-22 08:14:13 (2900): Guest Log: -rw-------. 1 atlas atlas    682652 Jun 22 05:13 log.38921007._047898.job.log.tgz.1
2024-06-22 08:14:13 (2900): Guest Log: -rw-------. 1 atlas atlas        95 Jun 22 05:13 pilot_heartbeat.json
2024-06-22 08:14:13 (2900): Guest Log: -rw-------. 1 atlas atlas      7745 Jun 22 05:13 heartbeat.json
2024-06-22 08:14:13 (2900): Guest Log: -rw-------. 1 atlas atlas      4343 Jun 22 05:14 pilotlog.txt
2024-06-22 08:14:13 (2900): Guest Log: -rw-------. 1 atlas atlas   5621675 Jun 22 05:14 log.38921007._047898.job.log.1
2024-06-22 08:14:13 (2900): Guest Log: -rw-------. 1 atlas atlas       357 Jun 22 05:14 output.list
2024-06-22 08:14:13 (2900): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 22 05:14 runtime_log
2024-06-22 08:14:13 (2900): Guest Log: -rw-------. 1 atlas atlas   6328320 Jun 22 05:14 result.tar.gz
2024-06-22 08:14:13 (2900): Guest Log: -rw-r--r--. 1 atlas atlas     10967 Jun 22 05:14 runtime_log.err
2024-06-22 08:14:13 (2900): Guest Log: -rw-------. 1 atlas atlas       663 Jun 22 05:14 MdqNDmyttd5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmYNjKDmG2Rr5n.diag
2024-06-22 08:14:13 (2900): Guest Log: Looking for outputfile HITS.38921007._047898.pool.root.1
2024-06-22 08:14:13 (2900): Guest Log: HITS file was successfully produced
2024-06-22 08:14:13 (2900): Guest Log: -rw-------. 1 atlas atlas 351608630 Jun 22 05:12 /home/atlas/RunAtlas/HITS.38921007._047898.pool.root.1
2024-06-22 08:14:15 (2900): Guest Log: Successfully finished the ATLAS job!
2024-06-22 08:14:15 (2900): Guest Log: Copying the results back to the shared directory!
2024-06-22 08:14:15 (2900): Guest Log:  *** Contents of shared directory: ***
2024-06-22 08:14:15 (2900): Guest Log: total 923448
2024-06-22 08:14:15 (2900): Guest Log: -rwxrwxrwx. 1 root root 587154446 Jun 21 14:57 ATLAS.root_0
2024-06-22 08:14:15 (2900): Guest Log: -rwxrwxrwx. 1 root root 351608630 Jun 22 05:14 HITS.pool.root.1
2024-06-22 08:14:15 (2900): Guest Log: -rwxrwxrwx. 1 root root      8879 Jun 21 14:57 init_data.xml
2024-06-22 08:14:15 (2900): Guest Log: -rwxrwxrwx. 1 root root    482535 Jun 19 01:26 input.tar.gz
2024-06-22 08:14:15 (2900): Guest Log: -rwxrwxrwx. 1 root root   6328320 Jun 22 05:14 result.tar.gz
2024-06-22 08:14:15 (2900): Guest Log: -rwxrwxrwx. 1 root root     17537 Jun 19 01:26 start_atlas.sh
2024-06-22 08:14:15 (2900): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-22 08:14:15 (2900): VM Completion File Detected.
2024-06-22 08:14:15 (2900): Powering off VM.
2024-06-22 08:14:16 (2900): Successfully stopped VM.
2024-06-22 08:14:16 (2900): Deregistering VM. (boinc_578482f4af6b208c, slot#4)
2024-06-22 08:14:16 (2900): Removing network bandwidth throttle group from VM.
2024-06-22 08:14:16 (2900): Removing VM from VirtualBox.
08:14:21 (2900): called boinc_finish(0)

</stderr_txt>
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