Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:10:53 (21259): wrapper (7.7.26015): starting
13:10:53 (21259): wrapper: running run_atlas (--nthreads 8)
[2024-06-18 13:10:53] Arguments: --nthreads 8
[2024-06-18 13:10:53] Threads: 8
[2024-06-18 13:10:53] Checking for CVMFS
[2024-06-18 13:10:54] Probing /cvmfs/atlas.cern.ch... OK
[2024-06-18 13:10:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-06-18 13:10:55] Running cvmfs_config stat atlas.cern.ch
[2024-06-18 13:10:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-06-18 13:10:56] 2.11.2.0 58123 41345 251504 134020 0 202 10386473 18432001 22010 130560 0 275629065 98.948 576996353 41281 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2024-06-18 13:10:56] CVMFS is ok
[2024-06-18 13:10:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-18 13:10:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-18 13:10:56] Further information can be found at the LHC@home message board.
[2024-06-18 13:10:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-18 13:10:56] Checking for apptainer binary...
[2024-06-18 13:10:56] Using apptainer found in PATH at /usr/bin/apptainer
[2024-06-18 13:10:56] Running /usr/bin/apptainer --version
[2024-06-18 13:10:56] apptainer version 1.3.2-1.el7
[2024-06-18 13:10:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-18 13:11:20] c-211-40.aglt2.org
[2024-06-18 13:11:20] apptainer works
[2024-06-18 13:11:20] Set ATHENA_PROC_NUMBER=8
[2024-06-18 13:11:20] Set ATHENA_CORE_NUMBER=8
[2024-06-18 13:11:20] Starting ATLAS job with PandaID=6236146479
[2024-06-18 13:11:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-18 22:05:01]  *** The last 200 lines of the pilot log: ***
[2024-06-18 22:05:01] 2024-06-19 02:04:41,427 | INFO     | CPU arch script returned: x86-64-v3
[2024-06-18 22:05:01] 2024-06-19 02:04:41,428 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6236146479/memory_monitor_summary.json (trf name=prmon)
[2024-06-18 22:05:01] 2024-06-19 02:04:41,429 | INFO     | extracted standard info from prmon json
[2024-06-18 22:05:01] 2024-06-19 02:04:41,429 | INFO     | extracted standard memory fields from prmon json
[2024-06-18 22:05:01] 2024-06-19 02:04:41,429 | WARNING  | GPU info not found in prmon json
[2024-06-18 22:05:01] 2024-06-19 02:04:41,429 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-06-18 22:05:01] 2024-06-19 02:04:41,429 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-06-18 22:05:01] 2024-06-19 02:04:41,437 | INFO     | fitting pss+swap vs Time
[2024-06-18 22:05:01] 2024-06-19 02:04:41,437 | INFO     | model: linear, x: [1718731118.0, 1718731179.0, 1718731240.0, 1718731301.0, 1718731362.0, 1718731423.0, 1718731484.0, 1718731545.0, 1718731606.0, 1718731667.0, 1718
[2024-06-18 22:05:01] 2024-06-19 02:04:41,438 | INFO     | sum of square deviations: 43098797241.30707
[2024-06-18 22:05:01] 2024-06-19 02:04:41,443 | INFO     | sum of deviations: 1037092857934.2306
[2024-06-18 22:05:01] 2024-06-19 02:04:41,443 | INFO     | mean x: 1718746886.519305
[2024-06-18 22:05:01] 2024-06-19 02:04:41,443 | INFO     | mean y: 2406050.527027027
[2024-06-18 22:05:01] 2024-06-19 02:04:41,443 | INFO     | -- intersect: -41356059491.46425
[2024-06-18 22:05:01] 2024-06-19 02:04:41,443 | INFO     | intersect: -41356059491.46425
[2024-06-18 22:05:01] 2024-06-19 02:04:41,444 | INFO     | chi2: 17.397798112692243
[2024-06-18 22:05:01] 2024-06-19 02:04:41,444 | INFO     | model: linear, x: [1718731118.0, 1718731179.0, 1718731240.0, 1718731301.0, 1718731362.0, 1718731423.0, 1718731484.0, 1718731545.0, 1718731606.0, 1718731667.0, 1718
[2024-06-18 22:05:01] 2024-06-19 02:04:41,445 | INFO     | sum of square deviations: 41862767813.805626
[2024-06-18 22:05:01] 2024-06-19 02:04:41,450 | INFO     | sum of deviations: 1061114017937.0822
[2024-06-18 22:05:01] 2024-06-19 02:04:41,450 | INFO     | mean x: 1718746734.019493
[2024-06-18 22:05:01] 2024-06-19 02:04:41,450 | INFO     | mean y: 2408980.091617934
[2024-06-18 22:05:01] 2024-06-19 02:04:41,450 | INFO     | -- intersect: -43563421661.19264
[2024-06-18 22:05:01] 2024-06-19 02:04:41,451 | INFO     | intersect: -43563421661.19264
[2024-06-18 22:05:01] 2024-06-19 02:04:41,451 | INFO     | chi2: 16.622995953472813
[2024-06-18 22:05:01] 2024-06-19 02:04:41,451 | INFO     | current chi2=16.622995953472813 (change=4.453449535399467 %)
[2024-06-18 22:05:01] 2024-06-19 02:04:41,451 | INFO     | right removable region: 512
[2024-06-18 22:05:01] 2024-06-19 02:04:41,452 | INFO     | model: linear, x: [1718731423.0, 1718731484.0, 1718731545.0, 1718731606.0, 1718731667.0, 1718731728.0, 1718731789.0, 1718731850.0, 1718731911.0, 1718731972.0, 1718
[2024-06-18 22:05:01] 2024-06-19 02:04:41,452 | INFO     | sum of square deviations: 41862761713.805626
[2024-06-18 22:05:01] 2024-06-19 02:04:41,457 | INFO     | sum of deviations: 868220852329.5256
[2024-06-18 22:05:01] 2024-06-19 02:04:41,457 | INFO     | mean x: 1718747039.019493
[2024-06-18 22:05:01] 2024-06-19 02:04:41,457 | INFO     | mean y: 2426875.947368421
[2024-06-18 22:05:01] 2024-06-19 02:04:41,457 | INFO     | -- intersect: -35643860135.83938
[2024-06-18 22:05:01] 2024-06-19 02:04:41,457 | INFO     | intersect: -35643860135.83938
[2024-06-18 22:05:01] 2024-06-19 02:04:41,458 | INFO     | chi2: 12.996799747914281
[2024-06-18 22:05:01] 2024-06-19 02:04:41,458 | INFO     | current chi2=12.996799747914281 (change=25.296295176383815 %)
[2024-06-18 22:05:01] 2024-06-19 02:04:41,458 | INFO     | model: linear, x: [1718731728.0, 1718731789.0, 1718731850.0, 1718731911.0, 1718731972.0, 1718732033.0, 1718732094.0, 1718732155.0, 1718732216.0, 1718732277.0, 1718
[2024-06-18 22:05:01] 2024-06-19 02:04:41,459 | INFO     | sum of square deviations: 40650587098.803246
[2024-06-18 22:05:01] 2024-06-19 02:04:41,464 | INFO     | sum of deviations: 741565638718.9291
[2024-06-18 22:05:01] 2024-06-19 02:04:41,464 | INFO     | mean x: 1718747191.519685
[2024-06-18 22:05:01] 2024-06-19 02:04:41,465 | INFO     | mean y: 2442798.307086614
[2024-06-18 22:05:01] 2024-06-19 02:04:41,465 | INFO     | -- intersect: -31351688835.210796
[2024-06-18 22:05:01] 2024-06-19 02:04:41,465 | INFO     | intersect: -31351688835.210796
[2024-06-18 22:05:01] 2024-06-19 02:04:41,465 | INFO     | chi2: 10.68794178907156
[2024-06-18 22:05:01] 2024-06-19 02:04:41,466 | INFO     | current chi2=10.68794178907156 (change=17.76481906027093 %)
[2024-06-18 22:05:01] 2024-06-19 02:04:41,466 | INFO     | left removable region: 20
[2024-06-18 22:05:01] 2024-06-19 02:04:41,466 | INFO     | model: linear, x: [1718732338.0, 1718732399.0, 1718732460.0, 1718732521.0, 1718732582.0, 1718732643.0, 1718732704.0, 1718732765.0, 1718732826.0, 1718732887.0, 1718
[2024-06-18 22:05:01] 2024-06-19 02:04:41,466 | INFO     | sum of square deviations: 36929272094.796684
[2024-06-18 22:05:01] 2024-06-19 02:04:41,471 | INFO     | sum of deviations: 565498636151.6255
[2024-06-18 22:05:01] 2024-06-19 02:04:41,472 | INFO     | mean x: 1718747313.5203252
[2024-06-18 22:05:01] 2024-06-19 02:04:41,472 | INFO     | mean y: 2472550.337398374
[2024-06-18 22:05:01] 2024-06-19 02:04:41,472 | INFO     | -- intersect: -26316737294.634373
[2024-06-18 22:05:01] 2024-06-19 02:04:41,472 | INFO     | intersect: -26316737294.634373
[2024-06-18 22:05:01] 2024-06-19 02:04:41,472 | INFO     | chi2: 7.11557893674382
[2024-06-18 22:05:01] 2024-06-19 02:04:41,472 | INFO     | -- intersect: -26316737294.634373
[2024-06-18 22:05:01] 2024-06-19 02:04:41,472 | INFO     | current memory leak: 15.31 B/s (using 492 data points, chi2=7.12)
[2024-06-18 22:05:01] 2024-06-19 02:04:41,473 | INFO     | ..............................
[2024-06-18 22:05:01] 2024-06-19 02:04:41,473 | INFO     | . Timing measurements:
[2024-06-18 22:05:01] 2024-06-19 02:04:41,473 | INFO     | . get job = 0 s
[2024-06-18 22:05:01] 2024-06-19 02:04:41,473 | INFO     | . initial setup = 7 s
[2024-06-18 22:05:01] 2024-06-19 02:04:41,473 | INFO     | . payload setup = 79 s
[2024-06-18 22:05:01] 2024-06-19 02:04:41,473 | INFO     | . stage-in = 0 s
[2024-06-18 22:05:01] 2024-06-19 02:04:41,473 | INFO     | . payload execution = 31636 s
[2024-06-18 22:05:01] 2024-06-19 02:04:41,474 | INFO     | . stage-out = 1 s
[2024-06-18 22:05:01] 2024-06-19 02:04:41,474 | INFO     | . log creation = 0 s
[2024-06-18 22:05:01] 2024-06-19 02:04:41,474 | INFO     | ..............................
[2024-06-18 22:05:01] 2024-06-19 02:04:41,759 | INFO     | 
[2024-06-18 22:05:01] 2024-06-19 02:04:41,759 | INFO     | job summary report
[2024-06-18 22:05:01] 2024-06-19 02:04:41,759 | INFO     | --------------------------------------------------
[2024-06-18 22:05:01] 2024-06-19 02:04:41,759 | INFO     | PanDA job id: 6236146479
[2024-06-18 22:05:01] 2024-06-19 02:04:41,759 | INFO     | task id: 38921013
[2024-06-18 22:05:01] 2024-06-19 02:04:41,759 | INFO     | errors: (none)
[2024-06-18 22:05:01] 2024-06-19 02:04:41,759 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-18 22:05:01] 2024-06-19 02:04:41,759 | INFO     | pilot state: finished 
[2024-06-18 22:05:01] 2024-06-19 02:04:41,759 | INFO     | transexitcode: 0
[2024-06-18 22:05:01] 2024-06-19 02:04:41,759 | INFO     | exeerrorcode: 0
[2024-06-18 22:05:01] 2024-06-19 02:04:41,759 | INFO     | exeerrordiag: 
[2024-06-18 22:05:01] 2024-06-19 02:04:41,759 | INFO     | exitcode: 0
[2024-06-18 22:05:01] 2024-06-19 02:04:41,759 | INFO     | exitmsg: OK
[2024-06-18 22:05:01] 2024-06-19 02:04:41,759 | INFO     | cpuconsumptiontime: 137949 s
[2024-06-18 22:05:01] 2024-06-19 02:04:41,759 | INFO     | nevents: 400
[2024-06-18 22:05:01] 2024-06-19 02:04:41,759 | INFO     | neventsw: 0
[2024-06-18 22:05:01] 2024-06-19 02:04:41,760 | INFO     | pid: 3089
[2024-06-18 22:05:01] 2024-06-19 02:04:41,760 | INFO     | pgrp: 3089
[2024-06-18 22:05:01] 2024-06-19 02:04:41,760 | INFO     | corecount: 8
[2024-06-18 22:05:01] 2024-06-19 02:04:41,760 | INFO     | event service: False
[2024-06-18 22:05:01] 2024-06-19 02:04:41,760 | INFO     | sizes: {0: 2379739, 1: 2381275, 2: 2381275, 12: 2381303, 23: 2381331, 34: 2381359, 45: 2381515, 55: 2381543, 59: 2381777, 66: 2381805, 31719: 2420207, 31721: 24291
[2024-06-18 22:05:01] 2024-06-19 02:04:41,760 | INFO     | --------------------------------------------------
[2024-06-18 22:05:01] 2024-06-19 02:04:41,760 | INFO     | 
[2024-06-18 22:05:01] 2024-06-19 02:04:41,760 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2024-06-18 22:05:01] 2024-06-19 02:04:41,792 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-18 22:05:01] 2024-06-19 02:04:41,792 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-18 22:05:01] 2024-06-19 02:04:41,792 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-18 22:05:01] 2024-06-19 02:04:41,792 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-18 22:05:01] 2024-06-19 02:04:41,792 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-18 22:05:01] 2024-06-19 02:04:41,792 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-18 22:05:01] 2024-06-19 02:04:41,792 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-18 22:05:01] 2024-06-19 02:04:41,793 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-18 22:05:01] 2024-06-19 02:04:41,793 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-18 22:05:01] 2024-06-19 02:04:41,793 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-18 22:05:01] 2024-06-19 02:04:41,793 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-18 22:05:01] 2024-06-19 02:04:41,793 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-18 22:05:01] 2024-06-19 02:04:41,793 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-18 22:05:01] 2024-06-19 02:04:41,793 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-18 22:05:01] 2024-06-19 02:04:41,793 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-18 22:05:01] 2024-06-19 02:04:41,793 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-18 22:05:01] 2024-06-19 02:04:41,793 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-18 22:05:01] 2024-06-19 02:04:41,794 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-18 22:05:01] 2024-06-19 02:04:41,794 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-18 22:05:01] 2024-06-19 02:04:41,794 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-18 22:05:01] 2024-06-19 02:04:41,794 | INFO     | job 6236146479 has completed (purged errors)
[2024-06-18 22:05:01] 2024-06-19 02:04:41,794 | INFO     | overall cleanup function is called
[2024-06-18 22:05:01] 2024-06-19 02:04:42,802 | INFO     | --- collectZombieJob: --- 10, [3089]
[2024-06-18 22:05:01] 2024-06-19 02:04:42,803 | INFO     | zombie collector waiting for pid 3089
[2024-06-18 22:05:01] 2024-06-19 02:04:42,803 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-18 22:05:01] 2024-06-19 02:04:43,809 | INFO     | collected zombie processes
[2024-06-18 22:05:01] 2024-06-19 02:04:43,809 | INFO     | will now attempt to kill all subprocesses of pid=3089
[2024-06-18 22:05:01] 2024-06-19 02:04:43,809 | INFO     | killing group process 3081
[2024-06-18 22:05:01] 2024-06-19 02:04:43,809 | WARNING  | exception thrown when killing child group process under SIGTERM: [Errno 1] Operation not permitted
[2024-06-18 22:05:01] 2024-06-19 02:04:43,809 | WARNING  | exception thrown when killing child group process with SIGKILL: [Errno 1] Operation not permitted
[2024-06-18 22:05:01] 2024-06-19 02:04:43,968 | INFO     | process IDs to be killed: [3089] (in reverse order)
[2024-06-18 22:05:01] 2024-06-19 02:04:44,086 | WARNING  | found no corresponding commands to process id(s)
[2024-06-18 22:05:01] 2024-06-19 02:04:44,087 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-18 22:05:01] 2024-06-19 02:04:44,097 | INFO     | did not find any defunct processes belonging to 3089
[2024-06-18 22:05:01] 2024-06-19 02:04:44,106 | INFO     | did not find any defunct processes belonging to 3089
[2024-06-18 22:05:01] 2024-06-19 02:04:44,106 | INFO     | ready for new job
[2024-06-18 22:05:01] 2024-06-19 02:04:44,106 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-18 22:05:01] 2024-06-19 02:04:44,108 | INFO     | *************************************
[2024-06-18 22:05:01] 2024-06-19 02:04:44,108 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-18 22:05:01] 2024-06-19 02:04:44,108 | INFO     | *************************************
[2024-06-18 22:05:01] 2024-06-19 02:04:44,108 | INFO     | 
[2024-06-18 22:05:01] 2024-06-19 02:04:44,111 | INFO     | architecture information:
[2024-06-18 22:05:01] 2024-06-19 02:04:44,111 | INFO     | executing command: cat /etc/os-release
[2024-06-18 22:05:01] 2024-06-19 02:04:44,124 | INFO     | cat /etc/os-release:
[2024-06-18 22:05:01] NAME="CentOS Linux"
[2024-06-18 22:05:01] VERSION="7 (Core)"
[2024-06-18 22:05:01] ID="centos"
[2024-06-18 22:05:01] ID_LIKE="rhel fedora"
[2024-06-18 22:05:01] VERSION_ID="7"
[2024-06-18 22:05:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-18 22:05:01] ANSI_COLOR="0;31"
[2024-06-18 22:05:01] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-18 22:05:01] HOME_URL="https://www.centos.org/"
[2024-06-18 22:05:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-18 22:05:01] 
[2024-06-18 22:05:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-18 22:05:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-18 22:05:01] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-18 22:05:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-18 22:05:01] 
[2024-06-18 22:05:01] 2024-06-19 02:04:44,124 | INFO     | *************************************
[2024-06-18 22:05:01] 2024-06-19 02:04:44,627 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2024-06-18 22:05:01] 2024-06-19 02:04:44,683 | INFO     | sufficient remaining disk space (72313995264 B)
[2024-06-18 22:05:01] 2024-06-19 02:04:44,683 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-18 22:05:01] 2024-06-19 02:04:44,683 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-18 22:05:01] 2024-06-19 02:04:44,684 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-18 22:05:01] 2024-06-19 02:04:44,684 | INFO     | aborting loop
[2024-06-18 22:05:01] 2024-06-19 02:04:44,684 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-18 22:05:01] 2024-06-19 02:04:44,684 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-06-18 22:05:01] 2024-06-19 02:04:44,684 | INFO     | found 0 job(s) in 20 queues
[2024-06-18 22:05:01] 2024-06-19 02:04:44,684 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-18 22:05:01] 2024-06-19 02:04:44,684 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-18 22:05:01] 2024-06-19 02:04:45,302 | INFO     | all data control threads have been joined
[2024-06-18 22:05:01] 2024-06-19 02:04:45,499 | INFO     | all job control threads have been joined
[2024-06-18 22:05:01] 2024-06-19 02:04:45,567 | INFO     | all payload control threads have been joined
[2024-06-18 22:05:01] 2024-06-19 02:04:45,689 | INFO     | [job] retrieve thread has finished
[2024-06-18 22:05:01] 2024-06-19 02:04:45,689 | INFO     | [job] job monitor thread has finished
[2024-06-18 22:05:01] 2024-06-19 02:04:45,704 | INFO     | [data] copytool_in thread has finished
[2024-06-18 22:05:01] 2024-06-19 02:04:45,997 | INFO     | [job] create_data_payload thread has finished
[2024-06-18 22:05:01] 2024-06-19 02:04:46,010 | INFO     | [payload] validate_pre thread has finished
[2024-06-18 22:05:01] 2024-06-19 02:04:46,293 | INFO     | [payload] failed_post thread has finished
[2024-06-18 22:05:01] 2024-06-19 02:04:46,307 | INFO     | [data] control thread has finished
[2024-06-18 22:05:01] 2024-06-19 02:04:46,505 | INFO     | [job] control thread has finished
[2024-06-18 22:05:01] 2024-06-19 02:04:46,557 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-18 22:05:01] 2024-06-19 02:04:46,572 | INFO     | [payload] control thread has finished
[2024-06-18 22:05:01] 2024-06-19 02:04:46,691 | INFO     | [data] copytool_out thread has finished
[2024-06-18 22:05:01] 2024-06-19 02:04:46,931 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-18 22:05:01] 2024-06-19 02:04:47,040 | INFO     | [job] validate thread has finished
[2024-06-18 22:05:01] 2024-06-19 02:04:47,058 | INFO     | [payload] execute_payloads thread has finished
[2024-06-18 22:05:01] 2024-06-19 02:04:47,174 | INFO     | [payload] validate_post thread has finished
[2024-06-18 22:05:01] 2024-06-19 02:04:47,565 | INFO     | [job] queue monitor thread has finished
[2024-06-18 22:05:01] 2024-06-19 02:04:50,939 | INFO     | [data] queue_monitor thread has finished
[2024-06-18 22:05:01] 2024-06-19 02:04:55,003 | INFO     | job.realtimelogging is not enabled
[2024-06-18 22:05:01] 2024-06-19 02:04:56,009 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-18 22:05:01] 2024-06-19 02:04:56,128 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140052587874112)>', '<ExcThread(monitor, started 140052130670336)>']
[2024-06-18 22:05:01] 2024-06-19 02:04:56,740 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-18 22:05:01] 2024-06-19 02:04:56,740 | INFO     | [monitor] control thread has ended
[2024-06-18 22:05:01] 2024-06-19 02:05:01,153 | INFO     | all workflow threads have been joined
[2024-06-18 22:05:01] 2024-06-19 02:05:01,153 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-18 22:05:01] 2024-06-19 02:05:01,153 | INFO     | traces error code: 0
[2024-06-18 22:05:01] 2024-06-19 02:05:01,153 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-18 22:05:01] 2024-06-19 02:05:01,286 [wrapper] ==== pilot stdout END ====
[2024-06-18 22:05:01] 2024-06-19 02:05:01,288 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-18 22:05:01] 2024-06-19 02:05:01,290 [wrapper] pilotpid: 22670
[2024-06-18 22:05:01] 2024-06-19 02:05:01,299 [wrapper] Pilot exit status: 0
[2024-06-18 22:05:01] 2024-06-19 02:05:01,309 [wrapper] pandaids: 6236146479
[2024-06-18 22:05:01] 2024-06-19 02:05:01,395 [wrapper] cleanup supervisor_pilot  7596 22675
[2024-06-18 22:05:01] 2024-06-19 02:05:01,397 [wrapper] Test setup, not cleaning
[2024-06-18 22:05:01] 2024-06-19 02:05:01,400 [wrapper] ==== wrapper stdout END ====
[2024-06-18 22:05:01] 2024-06-19 02:05:01,402 [wrapper] ==== wrapper stderr END ====
[2024-06-18 22:05:01] 2024-06-19 02:05:01,417 [wrapper] apfmon messages muted
[2024-06-18 22:05:01]  *** Error codes and diagnostics ***
[2024-06-18 22:05:01]     "exeErrorCode": 0,
[2024-06-18 22:05:01]     "exeErrorDiag": "",
[2024-06-18 22:05:01]     "pilotErrorCode": 0,
[2024-06-18 22:05:01]     "pilotErrorDiag": "",
[2024-06-18 22:05:01]  *** Listing of results directory ***
[2024-06-18 22:05:01] total 880488
[2024-06-18 22:05:01] -rw-r--r-- 1 boincer umatlas    469766 Jun 18 06:42 pilot3.tar.gz
[2024-06-18 22:05:01] -rw-r--r-- 1 boincer umatlas      5654 Jun 18 06:46 queuedata.json
[2024-06-18 22:05:01] -rwx------ 1 boincer umatlas     32308 Jun 18 06:46 runpilot2-wrapper.sh
[2024-06-18 22:05:01] -rw-r--r-- 1 boincer umatlas       100 Jun 18 13:10 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-18 22:05:01] -rwxr-xr-x 1 boincer umatlas      7986 Jun 18 13:10 run_atlas
[2024-06-18 22:05:01] -rw-r--r-- 1 boincer umatlas       105 Jun 18 13:10 job.xml
[2024-06-18 22:05:01] -rw-r--r-- 2 boincer umatlas 543580881 Jun 18 13:10 EVNT.38776210._000388.pool.root.1
[2024-06-18 22:05:01] -rw-r--r-- 2 boincer umatlas     17537 Jun 18 13:10 start_atlas.sh
[2024-06-18 22:05:01] drwxrwx--x 2 boincer umatlas      4096 Jun 18 13:10 shared
[2024-06-18 22:05:01] -rw-r--r-- 2 boincer umatlas    482535 Jun 18 13:10 input.tar.gz
[2024-06-18 22:05:01] -rw-r--r-- 1 boincer umatlas         0 Jun 18 13:10 boinc_lockfile
[2024-06-18 22:05:01] -rw-r--r-- 1 boincer umatlas      2646 Jun 18 13:11 pandaJob.out
[2024-06-18 22:05:01] -rw------- 1 boincer umatlas       467 Jun 18 13:11 setup.sh.local
[2024-06-18 22:05:01] -rw------- 1 boincer umatlas   1022103 Jun 18 13:13 agis_schedconf.cvmfs.json
[2024-06-18 22:05:01] -rw------- 1 boincer umatlas   1317943 Jun 18 13:13 cric_ddmendpoints.json
[2024-06-18 22:05:01] drwx------ 4 boincer umatlas      4096 Jun 18 13:13 pilot3
[2024-06-18 22:05:01] -rw-r--r-- 1 boincer umatlas      6340 Jun 18 22:00 init_data.xml
[2024-06-18 22:05:01] -rw------- 1 boincer umatlas 347212067 Jun 18 22:03 HITS.38921013._045728.pool.root.1
[2024-06-18 22:05:01] -rw-r--r-- 1 boincer umatlas       533 Jun 18 22:03 boinc_task_state.xml
[2024-06-18 22:05:01] -rw------- 1 boincer umatlas        95 Jun 18 22:04 pilot_heartbeat.json
[2024-06-18 22:05:01] -rw------- 1 boincer umatlas      1084 Jun 18 22:04 memory_monitor_summary.json
[2024-06-18 22:05:01] -rw------- 1 boincer umatlas         0 Jun 18 22:04 agis_ddmendpoints.agis.ALL.json
[2024-06-18 22:05:01] -rw------- 1 boincer umatlas    579973 Jun 18 22:04 log.38921013._045728.job.log.tgz.1
[2024-06-18 22:05:01] -rw------- 1 boincer umatlas      7756 Jun 18 22:04 heartbeat.json
[2024-06-18 22:05:01] -rw------- 1 boincer umatlas      4406 Jun 18 22:05 pilotlog.txt
[2024-06-18 22:05:01] -rw-r--r-- 1 boincer umatlas        29 Jun 18 22:05 wrapper_checkpoint.txt
[2024-06-18 22:05:01] -rw-r--r-- 1 boincer umatlas      8192 Jun 18 22:05 boinc_mmap_file
[2024-06-18 22:05:01] -rw------- 1 boincer umatlas   3070153 Jun 18 22:05 log.38921013._045728.job.log.1
[2024-06-18 22:05:01] -rw------- 1 boincer umatlas       357 Jun 18 22:05 output.list
[2024-06-18 22:05:01] -rw-r--r-- 1 boincer umatlas       620 Jun 18 22:05 runtime_log
[2024-06-18 22:05:01] -rw------- 1 boincer umatlas   3665920 Jun 18 22:05 result.tar.gz
[2024-06-18 22:05:01] -rw------- 1 boincer umatlas       653 Jun 18 22:05 WtlNDmhXld5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDm31iKDmslUWdm.diag
[2024-06-18 22:05:01] -rw-r--r-- 1 boincer umatlas     11405 Jun 18 22:05 runtime_log.err
[2024-06-18 22:05:01] -rw-r--r-- 1 boincer umatlas     21717 Jun 18 22:05 stderr.txt
[2024-06-18 22:05:01] HITS file was successfully produced:
[2024-06-18 22:05:01] -rw------- 1 boincer umatlas 347212067 Jun 18 22:03 shared/HITS.pool.root.1
[2024-06-18 22:05:01]  *** Contents of shared directory: ***
[2024-06-18 22:05:01] total 874000
[2024-06-18 22:05:01] -rw-r--r-- 2 boincer umatlas 543580881 Jun 18 13:10 ATLAS.root_0
[2024-06-18 22:05:01] -rw-r--r-- 2 boincer umatlas     17537 Jun 18 13:10 start_atlas.sh
[2024-06-18 22:05:01] -rw-r--r-- 2 boincer umatlas    482535 Jun 18 13:10 input.tar.gz
[2024-06-18 22:05:01] -rw------- 1 boincer umatlas 347212067 Jun 18 22:03 HITS.pool.root.1
[2024-06-18 22:05:01] -rw------- 1 boincer umatlas   3665920 Jun 18 22:05 result.tar.gz
22:05:03 (21259): run_atlas exited; CPU time 134756.552078
22:05:03 (21259): called boinc_finish(0)

</stderr_txt>
]]>

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