Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-22 23:36:15 (18996): Detected: vboxwrapper 26206
2024-06-22 23:36:15 (18996): Detected: BOINC client v7.24.1
2024-06-22 23:36:15 (18996): Detected: VirtualBox VboxManage Interface (Version: 7.0.18)
2024-06-22 23:36:16 (18996): Successfully copied 'init_data.xml' to the shared directory.
2024-06-22 23:36:16 (18996): Create VM. (boinc_89d8d8c73d4b3cd8, slot#4)
2024-06-22 23:36:17 (18996): Setting Memory Size for VM. (4800MB)
2024-06-22 23:36:17 (18996): Setting CPU Count for VM. (8)
2024-06-22 23:36:17 (18996): Setting Chipset Options for VM.
2024-06-22 23:36:17 (18996): Setting Graphics Controller Options for VM.
2024-06-22 23:36:18 (18996): Setting Boot Options for VM.
2024-06-22 23:36:18 (18996): Setting Network Configuration for NAT.
2024-06-22 23:36:18 (18996): Enabling VM Network Access.
2024-06-22 23:36:18 (18996): Disabling USB Support for VM.
2024-06-22 23:36:19 (18996): Disabling COM Port Support for VM.
2024-06-22 23:36:19 (18996): Disabling LPT Port Support for VM.
2024-06-22 23:36:19 (18996): Disabling Audio Support for VM.
2024-06-22 23:36:19 (18996): Disabling Clipboard Support for VM.
2024-06-22 23:36:20 (18996): Disabling Drag and Drop Support for VM.
2024-06-22 23:36:20 (18996): Adding storage controller(s) to VM.
2024-06-22 23:36:20 (18996): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-22 23:36:21 (18996): Adding VirtualBox Guest Additions to VM.
2024-06-22 23:36:21 (18996): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-22 23:36:21 (18996): forwarding host port 52736 to guest port 80
2024-06-22 23:36:21 (18996): Enabling remote desktop for VM.
2024-06-22 23:36:22 (18996): Required extension pack not installed, remote desktop not enabled.
2024-06-22 23:36:22 (18996): Enabling shared directory for VM.
2024-06-22 23:36:22 (18996): Starting VM using VBoxManage interface. (boinc_89d8d8c73d4b3cd8, slot#4)
2024-06-22 23:36:28 (18996): Successfully started VM. (PID = '11376')
2024-06-22 23:36:28 (18996): Reporting VM Process ID to BOINC.
2024-06-22 23:36:28 (18996): Guest Log: BIOS: VirtualBox 7.0.18
2024-06-22 23:36:28 (18996): Guest Log: CPUID EDX: 0x178bfbff
2024-06-22 23:36:28 (18996): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-22 23:36:28 (18996): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-22 23:36:28 (18996): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-22 23:36:28 (18996): Detected: Web Application Enabled (http://localhost:52736)
2024-06-22 23:36:28 (18996): Preference change detected
2024-06-22 23:36:28 (18996): Setting CPU throttle for VM. (100%)
2024-06-22 23:36:28 (18996): Setting network throttle for VM. (3090KB)
2024-06-22 23:36:29 (18996): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-22 23:36:30 (18996): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-22 23:36:30 (18996): Guest Log: BIOS: Booting from Hard Disk...
2024-06-22 23:36:33 (18996): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-22 23:36:33 (18996): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-22 23:36:33 (18996): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-22 23:36:33 (18996): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-22 23:36:33 (18996): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-22 23:36:33 (18996): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-22 23:36:33 (18996): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-22 23:36:33 (18996): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-22 23:36:33 (18996): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-22 23:36:33 (18996): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-22 23:36:33 (18996): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-22 23:36:33 (18996): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-22 23:36:33 (18996): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-22 23:36:33 (18996): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-22 23:36:33 (18996): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-22 23:36:33 (18996): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-22 23:36:33 (18996): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-22 23:36:33 (18996): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-22 23:36:33 (18996): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-22 23:36:33 (18996): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-22 23:36:33 (18996): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-22 23:36:33 (18996): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-22 23:36:33 (18996): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-22 23:36:33 (18996): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-22 23:36:33 (18996): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-22 23:36:33 (18996): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-22 23:36:33 (18996): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-22 23:36:33 (18996): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-22 23:36:33 (18996): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-22 23:36:33 (18996): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-22 23:36:33 (18996): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-22 23:36:33 (18996): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-22 23:36:42 (18996): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-22 23:36:42 (18996): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-22 23:37:14 (18996): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-22 23:37:14 (18996): Guest Log: 00:00:00.000133 main     Log opened 2024-06-22T23:37:13.054506000Z
2024-06-22 23:37:14 (18996): Guest Log: 00:00:00.000209 main     OS Product: Linux
2024-06-22 23:37:14 (18996): Guest Log: 00:00:00.000232 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-22 23:37:14 (18996): Guest Log: 00:00:00.000251 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-22 23:37:14 (18996): Guest Log: 00:00:00.000267 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-22 23:37:14 (18996): Guest Log: 00:00:00.000268 main     Process ID: 1386
2024-06-22 23:37:14 (18996): Guest Log: 00:00:00.000268 main     Package type: LINUX_64BITS_GENERIC
2024-06-22 23:37:14 (18996): Guest Log: 00:00:00.000748 main     5.2.32 r132073 started. Verbose level = 0
2024-06-22 23:37:18 (18996): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-22 23:37:18 (18996): Guest Log: [INFO] Mounting shared directory
2024-06-22 23:37:18 (18996): Guest Log: [INFO] Checking for init_data.xml
2024-06-22 23:37:21 (18996): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-22 23:37:21 (18996): Guest Log: [INFO] Detected branch: prod
2024-06-22 23:37:21 (18996): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-22 23:37:21 (18996): Guest Log: Copying input files
2024-06-22 23:37:24 (18996): Guest Log: 00:00:10.112534 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 794 003 071 000ns (GuestNow=1 719 088 639 052 887 000 ns GuestLast=1 719 099 433 055 958 000 ns fSetTimeLastLoop=true )
2024-06-22 23:37:26 (18996): Guest Log: Copied input files into RunAtlas.
2024-06-22 23:37:26 (18996): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-06-22 23:37:26 (18996): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-06-22 23:37:26 (18996): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-06-22 23:37:26 (18996): Guest Log: Further information can be found at the LHC@home message board.
2024-06-22 23:37:41 (18996): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-22 23:37:41 (18996): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-22 23:37:41 (18996): Guest Log: 2.6.3.0 1665 0 32188 134178 3 1 3117206 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-06-22 23:37:44 (18996): Guest Log: copied the webapp to /var/www
2024-06-22 23:37:44 (18996): Guest Log: ATHENA_PROC_NUMBER=8
2024-06-22 23:37:44 (18996): Guest Log: ATHENA_CORE_NUMBER=8
2024-06-22 23:37:45 (18996): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-22 23:37:45 (18996): Guest Log:  *** Starting ATLAS job. (PandaID=6235768497 taskID=38921013) ***
2024-06-22 23:43:45 (18996): VM state change detected. (old = 'running', new = 'paused')
2024-06-23 00:23:32 (18996): VM state change detected. (old = 'paused', new = 'running')
2024-06-23 00:23:35 (18996): Guest Log: 00:06:33.416458 timesync vgsvcTimeSyncWorker: Radical host time change: 2 397 017 000 000ns (HostNow=1 719 091 388 550 000 000 ns HostLast=1 719 088 991 533 000 000 ns)
2024-06-23 00:23:45 (18996): Guest Log: 00:06:43.417531 timesync vgsvcTimeSyncWorker: Radical guest time change: 2 376 195 084 000ns (GuestNow=1 719 091 398 551 510 000 ns GuestLast=1 719 089 022 356 426 000 ns fSetTimeLastLoop=true )
2024-06-23 01:57:03 (18996): Status Report: Elapsed Time: '6000.000000'
2024-06-23 01:57:03 (18996): Status Report: CPU Time: '36582.468750'
2024-06-23 03:38:59 (18996): Status Report: Elapsed Time: '12000.000000'
2024-06-23 03:38:59 (18996): Status Report: CPU Time: '84713.312500'
2024-06-23 05:20:11 (18996): Status Report: Elapsed Time: '18000.000000'
2024-06-23 05:20:11 (18996): Status Report: CPU Time: '132607.140625'
2024-06-23 07:00:21 (18996): Guest Log:  *** Job finished ***
2024-06-23 07:00:21 (18996): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-23 07:00:21 (18996): Guest Log: 2024-06-23 03:59:44,364 | INFO     | [payload] failed_post thread has finished
2024-06-23 07:00:21 (18996): Guest Log: 2024-06-23 03:59:45,310 | INFO     | [job] queue monitor thread has finished
2024-06-23 07:00:21 (18996): Guest Log: 2024-06-23 03:59:46,113 | INFO     | [data] queue_monitor thread has finished
2024-06-23 07:00:21 (18996): Guest Log: 2024-06-23 03:59:47,385 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139744535250752)>', '<ExcThread(monitor, started 139743648007936)>']
2024-06-23 07:00:21 (18996): Guest Log: 2024-06-23 03:59:47,958 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-23 07:00:21 (18996): Guest Log: 2024-06-23 03:59:47,958 | INFO     | [monitor] control thread has ended
2024-06-23 07:00:21 (18996): Guest Log: 2024-06-23 03:59:52,408 | INFO     | all workflow threads have been joined
2024-06-23 07:00:21 (18996): Guest Log: 2024-06-23 03:59:52,408 | INFO     | end of generic workflow (traces error code: 0)
2024-06-23 07:00:21 (18996): Guest Log: 2024-06-23 03:59:52,408 | INFO     | traces error code: 0
2024-06-23 07:00:21 (18996): Guest Log: 2024-06-23 03:59:52,408 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-23 07:00:21 (18996): Guest Log: 2024-06-23 03:59:52,525 [wrapper] ==== pilot stdout END ====
2024-06-23 07:00:21 (18996): Guest Log: 2024-06-23 03:59:52,528 [wrapper] ==== wrapper stdout RESUME ====
2024-06-23 07:00:21 (18996): Guest Log: 2024-06-23 03:59:52,532 [wrapper] pilotpid: 6594
2024-06-23 07:00:21 (18996): Guest Log: 2024-06-23 03:59:52,536 [wrapper] Pilot exit status: 0
2024-06-23 07:00:21 (18996): Guest Log: 2024-06-23 03:59:52,583 [wrapper] pandaids: 6235768497
2024-06-23 07:00:21 (18996): Guest Log: 2024-06-23 03:59:52,604 [wrapper] cleanup supervisor_pilot   545 6595
2024-06-23 07:00:21 (18996): Guest Log: 2024-06-23 03:59:52,607 [wrapper] Test setup, not cleaning
2024-06-23 07:00:21 (18996): Guest Log: 2024-06-23 03:59:52,610 [wrapper] ==== wrapper stdout END ====
2024-06-23 07:00:21 (18996): Guest Log: 2024-06-23 03:59:52,613 [wrapper] ==== wrapper stderr END ====
2024-06-23 07:00:21 (18996): Guest Log: 2024-06-23 03:59:52,619 [wrapper] apfmon messages muted
2024-06-23 07:00:21 (18996): Guest Log:  *** Error codes and diagnostics ***
2024-06-23 07:00:21 (18996): Guest Log:     "exeErrorCode": 0,
2024-06-23 07:00:21 (18996): Guest Log:     "exeErrorDiag": "",
2024-06-23 07:00:21 (18996): Guest Log:     "pilotErrorCode": 0,
2024-06-23 07:00:21 (18996): Guest Log:     "pilotErrorDiag": "",
2024-06-23 07:00:21 (18996): Guest Log:  *** Listing of results directory ***
2024-06-23 07:00:21 (18996): Guest Log: total 345272
2024-06-23 07:00:21 (18996): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 18 05:24 pilot3.tar.gz
2024-06-23 07:00:21 (18996): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 18 05:32 queuedata.json
2024-06-23 07:00:21 (18996): Guest Log: -rwx------. 1 atlas atlas     32308 Jun 18 05:32 runpilot2-wrapper.sh
2024-06-23 07:00:21 (18996): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Jun 22 20:37 start_atlas.sh
2024-06-23 07:00:21 (18996): Guest Log: -rwxr-xr-x. 1 atlas atlas    482527 Jun 22 20:37 input.tar.gz
2024-06-23 07:00:21 (18996): Guest Log: -rwxr-xr-x. 1 atlas atlas      9290 Jun 22 20:37 init_data.xml
2024-06-23 07:00:21 (18996): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 22 20:37 EVNT.38776210._001020.pool.root.1 -> /data/./ATLAS.root_0
2024-06-23 07:00:21 (18996): Guest Log: -rw-r--r--. 1 atlas atlas      2647 Jun 22 20:37 pandaJob.out
2024-06-23 07:00:21 (18996): Guest Log: -rw-------. 1 atlas atlas       424 Jun 22 20:38 setup.sh.local
2024-06-23 07:00:21 (18996): Guest Log: -rw-------. 1 atlas atlas   1025691 Jun 22 20:39 agis_schedconf.cvmfs.json
2024-06-23 07:00:21 (18996): Guest Log: -rw-------. 1 atlas atlas   1321363 Jun 22 20:39 cric_ddmendpoints.json
2024-06-23 07:00:21 (18996): Guest Log: drwx------. 4 atlas atlas      4096 Jun 22 20:39 pilot3
2024-06-23 07:00:21 (18996): Guest Log: -rw-------. 1 atlas atlas 344432693 Jun 23 03:58 HITS.38921013._045318.pool.root.1
2024-06-23 07:00:21 (18996): Guest Log: -rw-------. 1 atlas atlas      1026 Jun 23 03:59 memory_monitor_summary.json
2024-06-23 07:00:21 (18996): Guest Log: -rw-------. 1 atlas atlas         0 Jun 23 03:59 agis_ddmendpoints.agis.ALL.json
2024-06-23 07:00:21 (18996): Guest Log: -rw-------. 1 atlas atlas    480955 Jun 23 03:59 log.38921013._045318.job.log.tgz.1
2024-06-23 07:00:21 (18996): Guest Log: -rw-------. 1 atlas atlas        97 Jun 23 03:59 pilot_heartbeat.json
2024-06-23 07:00:21 (18996): Guest Log: -rw-------. 1 atlas atlas      7716 Jun 23 03:59 heartbeat.json
2024-06-23 07:00:21 (18996): Guest Log: -rw-------. 1 atlas atlas      4394 Jun 23 03:59 pilotlog.txt
2024-06-23 07:00:21 (18996): Guest Log: -rw-------. 1 atlas atlas   2349819 Jun 23 03:59 log.38921013._045318.job.log.1
2024-06-23 07:00:21 (18996): Guest Log: -rw-------. 1 atlas atlas       357 Jun 23 03:59 output.list
2024-06-23 07:00:21 (18996): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 23 03:59 runtime_log
2024-06-23 07:00:21 (18996): Guest Log: -rw-------. 1 atlas atlas   2846720 Jun 23 03:59 result.tar.gz
2024-06-23 07:00:21 (18996): Guest Log: -rw-r--r--. 1 atlas atlas     10943 Jun 23 03:59 runtime_log.err
2024-06-23 07:00:21 (18996): Guest Log: -rw-------. 1 atlas atlas       653 Jun 23 03:59 6hJKDmjdgd5n9Rq4apOajLDm4fhM0noT9bVo2ijZDm42VKDm3dLZFm.diag
2024-06-23 07:00:21 (18996): Guest Log: Looking for outputfile HITS.38921013._045318.pool.root.1
2024-06-23 07:00:21 (18996): Guest Log: HITS file was successfully produced
2024-06-23 07:00:21 (18996): Guest Log: -rw-------. 1 atlas atlas 344432693 Jun 23 03:58 /home/atlas/RunAtlas/HITS.38921013._045318.pool.root.1
2024-06-23 07:00:22 (18996): Guest Log: Successfully finished the ATLAS job!
2024-06-23 07:00:22 (18996): Guest Log: Copying the results back to the shared directory!
2024-06-23 07:00:22 (18996): Guest Log:  *** Contents of shared directory: ***
2024-06-23 07:00:23 (18996): Guest Log: total 868536
2024-06-23 07:00:23 (18996): Guest Log: -rwxrwxrwx. 1 root root 541577298 Jun 22 20:36 ATLAS.root_0
2024-06-23 07:00:23 (18996): Guest Log: -rwxrwxrwx. 1 root root 344432693 Jun 23  2024 HITS.pool.root.1
2024-06-23 07:00:23 (18996): Guest Log: -rwxrwxrwx. 1 root root      9290 Jun 22 20:36 init_data.xml
2024-06-23 07:00:23 (18996): Guest Log: -rwxrwxrwx. 1 root root    482527 Jun 18 12:07 input.tar.gz
2024-06-23 07:00:23 (18996): Guest Log: -rwxrwxrwx. 1 root root   2846720 Jun 23  2024 result.tar.gz
2024-06-23 07:00:23 (18996): Guest Log: -rwxrwxrwx. 1 root root     17537 Jun 18 12:07 start_atlas.sh
2024-06-23 07:00:23 (18996): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-23 07:00:23 (18996): VM Completion File Detected.
2024-06-23 07:00:23 (18996): Powering off VM.
2024-06-23 07:00:24 (18996): Successfully stopped VM.
2024-06-23 07:00:24 (18996): Deregistering VM. (boinc_89d8d8c73d4b3cd8, slot#4)
2024-06-23 07:00:24 (18996): Removing network bandwidth throttle group from VM.
2024-06-23 07:00:24 (18996): Removing VM from VirtualBox.
07:00:30 (18996): called boinc_finish(0)

</stderr_txt>
]]>

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