Stderr output

<core_client_version>7.16.5</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-21 02:27:17 (10516): Detected: vboxwrapper 26206
2024-06-21 02:27:17 (10516): Detected: BOINC client v7.16.5
2024-06-21 02:27:18 (10516): Detected: VirtualBox VboxManage Interface (Version: 5.2.44)
2024-06-21 02:27:18 (10516): Successfully copied 'init_data.xml' to the shared directory.
2024-06-21 02:27:19 (10516): Create VM. (boinc_0104c415ebdcd642, slot#4)
2024-06-21 02:27:19 (10516): Setting Memory Size for VM. (4400MB)
2024-06-21 02:27:19 (10516): Setting CPU Count for VM. (4)
2024-06-21 02:27:20 (10516): Setting Chipset Options for VM.
2024-06-21 02:27:20 (10516): Setting Graphics Controller Options for VM.
2024-06-21 02:27:20 (10516): Setting Boot Options for VM.
2024-06-21 02:27:21 (10516): Setting Network Configuration for NAT.
2024-06-21 02:27:21 (10516): Enabling VM Network Access.
2024-06-21 02:27:21 (10516): Disabling USB Support for VM.
2024-06-21 02:27:21 (10516): Disabling COM Port Support for VM.
2024-06-21 02:27:22 (10516): Disabling LPT Port Support for VM.
2024-06-21 02:27:22 (10516): Disabling Audio Support for VM.
2024-06-21 02:27:22 (10516): Disabling Clipboard Support for VM.
2024-06-21 02:27:22 (10516): Disabling Drag and Drop Support for VM.
2024-06-21 02:27:23 (10516): Adding storage controller(s) to VM.
2024-06-21 02:27:23 (10516): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-21 02:27:23 (10516): Adding VirtualBox Guest Additions to VM.
2024-06-21 02:27:24 (10516): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-21 02:27:24 (10516): forwarding host port 64691 to guest port 80
2024-06-21 02:27:24 (10516): Enabling remote desktop for VM.
2024-06-21 02:27:25 (10516): Enabling shared directory for VM.
2024-06-21 02:27:25 (10516): Starting VM using VBoxManage interface. (boinc_0104c415ebdcd642, slot#4)
2024-06-21 02:27:30 (10516): Successfully started VM. (PID = '16848')
2024-06-21 02:27:30 (10516): Reporting VM Process ID to BOINC.
2024-06-21 02:27:30 (10516): Guest Log: BIOS: VirtualBox 5.2.44
2024-06-21 02:27:30 (10516): Guest Log: CPUID EDX: 0x178bfbff
2024-06-21 02:27:30 (10516): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-21 02:27:30 (10516): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-21 02:27:30 (10516): Detected: Web Application Enabled (http://localhost:64691)
2024-06-21 02:27:30 (10516): Detected: Remote Desktop Enabled (localhost:64692)
2024-06-21 02:27:30 (10516): Preference change detected
2024-06-21 02:27:30 (10516): Setting CPU throttle for VM. (100%)
2024-06-21 02:27:30 (10516): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-21 02:27:32 (10516): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-21 02:27:32 (10516): Guest Log: BIOS: Booting from Hard Disk...
2024-06-21 02:27:35 (10516): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-21 02:27:35 (10516): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-21 02:27:35 (10516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-21 02:27:35 (10516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-21 02:27:35 (10516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-21 02:27:35 (10516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-21 02:27:35 (10516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-21 02:27:35 (10516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-21 02:27:35 (10516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-21 02:27:35 (10516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-21 02:27:35 (10516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-21 02:27:35 (10516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-21 02:27:35 (10516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-21 02:27:35 (10516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-21 02:27:35 (10516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-21 02:27:35 (10516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-21 02:27:35 (10516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-21 02:27:35 (10516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-21 02:27:35 (10516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-21 02:27:35 (10516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-21 02:27:35 (10516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-21 02:27:35 (10516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-21 02:27:35 (10516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-21 02:27:35 (10516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-21 02:27:35 (10516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-21 02:27:35 (10516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-21 02:27:35 (10516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-21 02:27:35 (10516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-21 02:27:35 (10516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-21 02:27:35 (10516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-21 02:27:35 (10516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-21 02:27:35 (10516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-21 02:27:41 (10516): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-21 02:27:41 (10516): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-21 02:27:47 (10516): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-21 02:27:47 (10516): Guest Log: 00:00:00.000278 main     Log opened 2024-06-21T02:27:45.769154000Z
2024-06-21 02:27:47 (10516): Guest Log: 00:00:00.000389 main     OS Product: Linux
2024-06-21 02:27:47 (10516): Guest Log: 00:00:00.000454 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-21 02:27:47 (10516): Guest Log: 00:00:00.000488 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-21 02:27:47 (10516): Guest Log: 00:00:00.000517 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-21 02:27:47 (10516): Guest Log: 00:00:00.000518 main     Process ID: 1303
2024-06-21 02:27:47 (10516): Guest Log: 00:00:00.000519 main     Package type: LINUX_64BITS_GENERIC
2024-06-21 02:27:47 (10516): Guest Log: 00:00:00.001754 main     5.2.32 r132073 started. Verbose level = 0
2024-06-21 02:27:47 (10516): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-21 02:27:47 (10516): Guest Log: [INFO] Mounting shared directory
2024-06-21 02:27:48 (10516): Guest Log: [INFO] Checking for init_data.xml
2024-06-21 02:27:57 (10516): Guest Log: 00:00:10.004717 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 788 781 366 000ns (GuestNow=1 718 926 076 991 592 000 ns GuestLast=1 718 936 865 772 958 000 ns fSetTimeLastLoop=true )
2024-06-21 02:29:25 (10516): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-21 02:29:25 (10516): Guest Log: [INFO] Detected branch: prod
2024-06-21 02:29:26 (10516): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-21 02:29:26 (10516): Guest Log: Copying input files
2024-06-21 02:29:31 (10516): Guest Log: Copied input files into RunAtlas.
2024-06-21 02:29:31 (10516): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-06-21 02:29:31 (10516): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-06-21 02:29:31 (10516): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-06-21 02:29:31 (10516): Guest Log: Further information can be found at the LHC@home message board.
2024-06-21 02:31:20 (10516): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-21 02:31:20 (10516): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-21 02:31:20 (10516): Guest Log: 2.6.3.0 1616 2 32036 134106 4 1 3117205 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-06-21 02:31:21 (10516): Guest Log: copied the webapp to /var/www
2024-06-21 02:31:21 (10516): Guest Log: ATHENA_PROC_NUMBER=4
2024-06-21 02:31:21 (10516): Guest Log: ATHENA_CORE_NUMBER=4
2024-06-21 02:31:21 (10516): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-21 02:31:21 (10516): Guest Log:  *** Starting ATLAS job. (PandaID=6235632965 taskID=38921013) ***
2024-06-21 04:07:33 (10516): Status Report: Elapsed Time: '6000.000000'
2024-06-21 04:07:33 (10516): Status Report: CPU Time: '18379.984375'
2024-06-21 05:47:39 (10516): Status Report: Elapsed Time: '12000.000000'
2024-06-21 05:47:39 (10516): Status Report: CPU Time: '42250.078125'
2024-06-21 07:27:42 (10516): Status Report: Elapsed Time: '18000.000000'
2024-06-21 07:27:42 (10516): Status Report: CPU Time: '64238.218750'
2024-06-21 09:07:46 (10516): Status Report: Elapsed Time: '24000.000000'
2024-06-21 09:07:46 (10516): Status Report: CPU Time: '84275.625000'
2024-06-21 10:47:49 (10516): Status Report: Elapsed Time: '30000.000000'
2024-06-21 10:47:49 (10516): Status Report: CPU Time: '105245.390625'
2024-06-21 12:27:53 (10516): Status Report: Elapsed Time: '36000.000000'
2024-06-21 12:27:53 (10516): Status Report: CPU Time: '125394.390625'
2024-06-21 14:07:57 (10516): Status Report: Elapsed Time: '42000.000000'
2024-06-21 14:07:57 (10516): Status Report: CPU Time: '147871.125000'
2024-06-21 15:48:00 (10516): Status Report: Elapsed Time: '48000.000000'
2024-06-21 15:48:00 (10516): Status Report: CPU Time: '169622.484375'
2024-06-21 17:28:04 (10516): Status Report: Elapsed Time: '54000.000000'
2024-06-21 17:28:04 (10516): Status Report: CPU Time: '190338.609375'
2024-06-21 17:57:29 (10516): Guest Log:  *** Job finished ***
2024-06-21 17:57:29 (10516): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-21 17:57:29 (10516): Guest Log: 2024-06-21 14:57:15,661 | INFO     | [data] queue_monitor thread has finished
2024-06-21 17:57:29 (10516): Guest Log: 2024-06-21 14:57:19,686 | INFO     | job.realtimelogging is not enabled
2024-06-21 17:57:29 (10516): Guest Log: 2024-06-21 14:57:20,687 | INFO     | [payload] run_realtimelog thread has finished
2024-06-21 17:57:29 (10516): Guest Log: 2024-06-21 14:57:22,608 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140244162201408)>', '<ExcThread(monitor, started 140243860694784)>']
2024-06-21 17:57:29 (10516): Guest Log: 2024-06-21 14:57:23,150 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-21 17:57:29 (10516): Guest Log: 2024-06-21 14:57:23,151 | INFO     | [monitor] control thread has ended
2024-06-21 17:57:29 (10516): Guest Log: 2024-06-21 14:57:27,622 | INFO     | all workflow threads have been joined
2024-06-21 17:57:29 (10516): Guest Log: 2024-06-21 14:57:27,622 | INFO     | end of generic workflow (traces error code: 0)
2024-06-21 17:57:29 (10516): Guest Log: 2024-06-21 14:57:27,622 | INFO     | traces error code: 0
2024-06-21 17:57:29 (10516): Guest Log: 2024-06-21 14:57:27,622 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-21 17:57:29 (10516): Guest Log: 2024-06-21 14:57:27,710 [wrapper] ==== pilot stdout END ====
2024-06-21 17:57:29 (10516): Guest Log: 2024-06-21 14:57:27,716 [wrapper] ==== wrapper stdout RESUME ====
2024-06-21 17:57:29 (10516): Guest Log: 2024-06-21 14:57:27,720 [wrapper] pilotpid: 6534
2024-06-21 17:57:29 (10516): Guest Log: 2024-06-21 14:57:27,725 [wrapper] Pilot exit status: 0
2024-06-21 17:57:29 (10516): Guest Log: 2024-06-21 14:57:27,815 [wrapper] pandaids: 6235632965
2024-06-21 17:57:29 (10516): Guest Log: 2024-06-21 14:57:27,845 [wrapper] cleanup supervisor_pilot 14047 6535
2024-06-21 17:57:29 (10516): Guest Log: 2024-06-21 14:57:27,850 [wrapper] Test setup, not cleaning
2024-06-21 17:57:29 (10516): Guest Log: 2024-06-21 14:57:27,855 [wrapper] ==== wrapper stdout END ====
2024-06-21 17:57:29 (10516): Guest Log: 2024-06-21 14:57:27,862 [wrapper] ==== wrapper stderr END ====
2024-06-21 17:57:29 (10516): Guest Log: 2024-06-21 14:57:27,872 [wrapper] apfmon messages muted
2024-06-21 17:57:29 (10516): Guest Log:  *** Error codes and diagnostics ***
2024-06-21 17:57:29 (10516): Guest Log:     "exeErrorCode": 0,
2024-06-21 17:57:29 (10516): Guest Log:     "exeErrorDiag": "",
2024-06-21 17:57:29 (10516): Guest Log:     "pilotErrorCode": 0,
2024-06-21 17:57:29 (10516): Guest Log:     "pilotErrorDiag": "",
2024-06-21 17:57:29 (10516): Guest Log:  *** Listing of results directory ***
2024-06-21 17:57:29 (10516): Guest Log: total 354652
2024-06-21 17:57:29 (10516): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 18 04:02 pilot3.tar.gz
2024-06-21 17:57:29 (10516): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 18 04:09 queuedata.json
2024-06-21 17:57:29 (10516): Guest Log: -rwx------. 1 atlas atlas     32308 Jun 18 04:10 runpilot2-wrapper.sh
2024-06-21 17:57:29 (10516): Guest Log: -rwxr-xr-x. 1 atlas atlas      8879 Jun 20 23:29 init_data.xml
2024-06-21 17:57:29 (10516): Guest Log: -rwxr-xr-x. 1 atlas atlas    482534 Jun 20 23:29 input.tar.gz
2024-06-21 17:57:29 (10516): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Jun 20 23:29 start_atlas.sh
2024-06-21 17:57:29 (10516): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 20 23:29 EVNT.38776210._000582.pool.root.1 -> /data/./ATLAS.root_0
2024-06-21 17:57:29 (10516): Guest Log: -rw-r--r--. 1 atlas atlas      2646 Jun 20 23:31 pandaJob.out
2024-06-21 17:57:29 (10516): Guest Log: -rw-------. 1 atlas atlas       424 Jun 20 23:31 setup.sh.local
2024-06-21 17:57:29 (10516): Guest Log: -rw-------. 1 atlas atlas   1024126 Jun 20 23:33 agis_schedconf.cvmfs.json
2024-06-21 17:57:29 (10516): Guest Log: -rw-------. 1 atlas atlas   1321251 Jun 20 23:33 cric_ddmendpoints.json
2024-06-21 17:57:29 (10516): Guest Log: drwx------. 4 atlas atlas      4096 Jun 20 23:33 pilot3
2024-06-21 17:57:29 (10516): Guest Log: -rw-------. 1 atlas atlas 346595851 Jun 21 14:56 HITS.38921013._045176.pool.root.1
2024-06-21 17:57:29 (10516): Guest Log: -rw-------. 1 atlas atlas        95 Jun 21 14:56 pilot_heartbeat.json
2024-06-21 17:57:29 (10516): Guest Log: -rw-------. 1 atlas atlas      1028 Jun 21 14:56 memory_monitor_summary.json
2024-06-21 17:57:29 (10516): Guest Log: -rw-------. 1 atlas atlas         0 Jun 21 14:56 agis_ddmendpoints.agis.ALL.json
2024-06-21 17:57:29 (10516): Guest Log: -rw-------. 1 atlas atlas    710053 Jun 21 14:56 log.38921013._045176.job.log.tgz.1
2024-06-21 17:57:29 (10516): Guest Log: -rw-------. 1 atlas atlas      7744 Jun 21 14:57 heartbeat.json
2024-06-21 17:57:29 (10516): Guest Log: -rw-------. 1 atlas atlas      4343 Jun 21 14:57 pilotlog.txt
2024-06-21 17:57:29 (10516): Guest Log: -rw-------. 1 atlas atlas   5839109 Jun 21 14:57 log.38921013._045176.job.log.1
2024-06-21 17:57:29 (10516): Guest Log: -rw-------. 1 atlas atlas       357 Jun 21 14:57 output.list
2024-06-21 17:57:29 (10516): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 21 14:57 runtime_log
2024-06-21 17:57:29 (10516): Guest Log: -rw-------. 1 atlas atlas   6563840 Jun 21 14:57 result.tar.gz
2024-06-21 17:57:29 (10516): Guest Log: -rw-r--r--. 1 atlas atlas     10967 Jun 21 14:57 runtime_log.err
2024-06-21 17:57:29 (10516): Guest Log: -rw-------. 1 atlas atlas       663 Jun 21 14:57 5bBNDmzLfd5n9Rq4apOajLDm4fhM0noT9bVo2ijZDmY1VKDmitmN6n.diag
2024-06-21 17:57:29 (10516): Guest Log: Looking for outputfile HITS.38921013._045176.pool.root.1
2024-06-21 17:57:29 (10516): Guest Log: HITS file was successfully produced
2024-06-21 17:57:29 (10516): Guest Log: -rw-------. 1 atlas atlas 346595851 Jun 21 14:56 /home/atlas/RunAtlas/HITS.38921013._045176.pool.root.1
2024-06-21 17:57:31 (10516): Guest Log: Successfully finished the ATLAS job!
2024-06-21 17:57:31 (10516): Guest Log: Copying the results back to the shared directory!
2024-06-21 17:57:31 (10516): Guest Log:  *** Contents of shared directory: ***
2024-06-21 17:57:31 (10516): Guest Log: total 875168
2024-06-21 17:57:31 (10516): Guest Log: -rwxrwxrwx. 1 root root 542486781 Jun 20 23:27 ATLAS.root_0
2024-06-21 17:57:31 (10516): Guest Log: -rwxrwxrwx. 1 root root 346595851 Jun 21 14:57 HITS.pool.root.1
2024-06-21 17:57:31 (10516): Guest Log: -rwxrwxrwx. 1 root root      8879 Jun 20 23:27 init_data.xml
2024-06-21 17:57:31 (10516): Guest Log: -rwxrwxrwx. 1 root root    482534 Jun 18 11:04 input.tar.gz
2024-06-21 17:57:31 (10516): Guest Log: -rwxrwxrwx. 1 root root   6563840 Jun 21 14:57 result.tar.gz
2024-06-21 17:57:31 (10516): Guest Log: -rwxrwxrwx. 1 root root     17537 Jun 18 11:04 start_atlas.sh
2024-06-21 17:57:31 (10516): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-21 17:57:31 (10516): VM Completion File Detected.
2024-06-21 17:57:31 (10516): Powering off VM.
2024-06-21 17:57:31 (10516): Successfully stopped VM.
2024-06-21 17:57:31 (10516): Deregistering VM. (boinc_0104c415ebdcd642, slot#4)
2024-06-21 17:57:31 (10516): Removing network bandwidth throttle group from VM.
2024-06-21 17:57:32 (10516): Removing VM from VirtualBox.
17:57:37 (10516): called boinc_finish(0)

</stderr_txt>
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