Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-18 18:27:49 (677923): Detected: vboxwrapper 26206
2024-06-18 18:27:49 (677923): Detected: BOINC client v7.24.1
2024-06-18 18:27:50 (677923): Detected: VirtualBox VboxManage Interface (Version: 7.0.18)
2024-06-18 18:27:50 (677923): Successfully copied 'init_data.xml' to the shared directory.
2024-06-18 18:27:50 (677923): Create VM. (boinc_5a0d6a074318a53e, slot#0)
2024-06-18 18:27:50 (677923): Setting Memory Size for VM. (4600MB)
2024-06-18 18:27:50 (677923): Setting CPU Count for VM. (6)
2024-06-18 18:27:50 (677923): Setting Chipset Options for VM.
2024-06-18 18:27:50 (677923): Setting Graphics Controller Options for VM.
2024-06-18 18:27:50 (677923): Setting Boot Options for VM.
2024-06-18 18:27:50 (677923): Setting Network Configuration for NAT.
2024-06-18 18:27:50 (677923): Enabling VM Network Access.
2024-06-18 18:27:50 (677923): Disabling USB Support for VM.
2024-06-18 18:27:50 (677923): Disabling COM Port Support for VM.
2024-06-18 18:27:50 (677923): Disabling LPT Port Support for VM.
2024-06-18 18:27:50 (677923): Disabling Audio Support for VM.
2024-06-18 18:27:50 (677923): Disabling Clipboard Support for VM.
2024-06-18 18:27:50 (677923): Disabling Drag and Drop Support for VM.
2024-06-18 18:27:50 (677923): Adding storage controller(s) to VM.
2024-06-18 18:27:50 (677923): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-18 18:27:51 (677923): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-18 18:27:51 (677923): forwarding host port 55927 to guest port 80
2024-06-18 18:27:51 (677923): Enabling remote desktop for VM.
2024-06-18 18:27:51 (677923): Required extension pack not installed, remote desktop not enabled.
2024-06-18 18:27:51 (677923): Enabling shared directory for VM.
2024-06-18 18:27:51 (677923): Starting VM using VBoxManage interface. (boinc_5a0d6a074318a53e, slot#0)
2024-06-18 18:27:53 (677923): Successfully started VM. (PID = '678182')
2024-06-18 18:27:53 (677923): Reporting VM Process ID to BOINC.
2024-06-18 18:27:53 (677923): Guest Log: BIOS: VirtualBox 7.0.18
2024-06-18 18:27:53 (677923): Guest Log: CPUID EDX: 0x178bfbff
2024-06-18 18:27:53 (677923): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-18 18:27:53 (677923): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-18 18:27:53 (677923): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-18 18:27:53 (677923): Detected: Web Application Enabled (http://localhost:55927)
2024-06-18 18:27:54 (677923): VM state change detected. (old = 'running', new = 'paused')
2024-06-18 18:28:12 (677923): Preference change detected
2024-06-18 18:28:12 (677923): Setting CPU throttle for VM. (50%)
2024-06-18 18:28:12 (677923): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-18 18:28:13 (677923): VM state change detected. (old = 'paused', new = 'running')
2024-06-18 18:28:14 (677923): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-18 18:28:14 (677923): Guest Log: BIOS: Booting from Hard Disk...
2024-06-18 18:28:17 (677923): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-18 18:28:17 (677923): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-18 18:28:17 (677923): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-18 18:28:17 (677923): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-18 18:28:17 (677923): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-18 18:28:17 (677923): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-18 18:28:17 (677923): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-18 18:28:17 (677923): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-18 18:28:17 (677923): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-18 18:28:17 (677923): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-18 18:28:17 (677923): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-18 18:28:17 (677923): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-18 18:28:17 (677923): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-18 18:28:17 (677923): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-18 18:28:17 (677923): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-18 18:28:17 (677923): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-18 18:28:17 (677923): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-18 18:28:17 (677923): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-18 18:28:17 (677923): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-18 18:28:17 (677923): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-18 18:28:17 (677923): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-18 18:28:17 (677923): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-18 18:28:17 (677923): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-18 18:28:17 (677923): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-18 18:28:17 (677923): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-18 18:28:17 (677923): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-18 18:28:17 (677923): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-18 18:28:17 (677923): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-18 18:28:17 (677923): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-18 18:28:17 (677923): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-18 18:28:17 (677923): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-18 18:28:17 (677923): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-18 18:28:23 (677923): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-18 18:28:23 (677923): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-18 18:28:29 (677923): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-18 18:28:29 (677923): Guest Log: 00:00:00.000091 main     Log opened 2024-06-18T16:28:07.914703000Z
2024-06-18 18:28:29 (677923): Guest Log: 00:00:00.000151 main     OS Product: Linux
2024-06-18 18:28:29 (677923): Guest Log: 00:00:00.000164 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-18 18:28:29 (677923): Guest Log: 00:00:00.000176 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-18 18:28:29 (677923): Guest Log: 00:00:00.000185 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-18 18:28:29 (677923): Guest Log: 00:00:00.000185 main     Process ID: 1326
2024-06-18 18:28:29 (677923): Guest Log: 00:00:00.000186 main     Package type: LINUX_64BITS_GENERIC
2024-06-18 18:28:29 (677923): Guest Log: 00:00:00.000590 main     5.2.32 r132073 started. Verbose level = 0
2024-06-18 18:28:29 (677923): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-18 18:28:29 (677923): Guest Log: [INFO] Mounting shared directory
2024-06-18 18:28:29 (677923): Guest Log: [INFO] Checking for init_data.xml
2024-06-18 18:28:31 (677923): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-18 18:28:31 (677923): Guest Log: [INFO] Detected branch: prod
2024-06-18 18:28:31 (677923): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-18 18:28:31 (677923): Guest Log: Copying input files
2024-06-18 18:28:33 (677923): Guest Log: Copied input files into RunAtlas.
2024-06-18 18:28:33 (677923): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-06-18 18:28:33 (677923): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-06-18 18:28:33 (677923): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-06-18 18:28:33 (677923): Guest Log: Further information can be found at the LHC@home message board.
2024-06-18 18:30:33 (677923): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-18 18:30:33 (677923): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-18 18:30:33 (677923): Guest Log: 2.6.3.0 1603 2 30212 134020 4 1 3117205 4096000 0 65024 0 0 n/a 1 6 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
2024-06-18 18:30:34 (677923): Guest Log: copied the webapp to /var/www
2024-06-18 18:30:34 (677923): Guest Log: ATHENA_PROC_NUMBER=6
2024-06-18 18:30:34 (677923): Guest Log: ATHENA_CORE_NUMBER=6
2024-06-18 18:30:34 (677923): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-18 18:30:34 (677923): Guest Log:  *** Starting ATLAS job. (PandaID=6234304387 taskID=38921013) ***
2024-06-18 20:07:13 (677923): Status Report: Elapsed Time: '6000.000000'
2024-06-18 20:07:13 (677923): Status Report: CPU Time: '13452.970000'
2024-06-18 21:46:13 (677923): Status Report: Elapsed Time: '12000.000000'
2024-06-18 21:46:13 (677923): Status Report: CPU Time: '30516.830000'
2024-06-18 23:25:14 (677923): Status Report: Elapsed Time: '18000.000000'
2024-06-18 23:25:14 (677923): Status Report: CPU Time: '47565.290000'
2024-06-19 01:04:14 (677923): Status Report: Elapsed Time: '24000.000000'
2024-06-19 01:04:14 (677923): Status Report: CPU Time: '64628.740000'
2024-06-19 01:51:01 (677923): Guest Log:  *** Job finished ***
2024-06-19 01:51:01 (677923): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-19 01:51:01 (677923): Guest Log: 2024-06-18 23:50:40,763 | INFO     | [data] queue_monitor thread has finished
2024-06-19 01:51:01 (677923): Guest Log: 2024-06-18 23:50:45,212 | INFO     | job.realtimelogging is not enabled
2024-06-19 01:51:01 (677923): Guest Log: 2024-06-18 23:50:46,213 | INFO     | [payload] run_realtimelog thread has finished
2024-06-19 01:51:01 (677923): Guest Log: 2024-06-18 23:50:46,741 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140697185085248)>', '<ExcThread(monitor, started 140696585484032)>']
2024-06-19 01:51:01 (677923): Guest Log: 2024-06-18 23:50:47,131 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-19 01:51:01 (677923): Guest Log: 2024-06-18 23:50:47,131 | INFO     | [monitor] control thread has ended
2024-06-19 01:51:01 (677923): Guest Log: 2024-06-18 23:50:51,746 | INFO     | all workflow threads have been joined
2024-06-19 01:51:01 (677923): Guest Log: 2024-06-18 23:50:51,746 | INFO     | end of generic workflow (traces error code: 0)
2024-06-19 01:51:01 (677923): Guest Log: 2024-06-18 23:50:51,747 | INFO     | traces error code: 0
2024-06-19 01:51:01 (677923): Guest Log: 2024-06-18 23:50:51,747 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-19 01:51:01 (677923): Guest Log: 2024-06-18 23:50:51,791 [wrapper] ==== pilot stdout END ====
2024-06-19 01:51:01 (677923): Guest Log: 2024-06-18 23:50:51,794 [wrapper] ==== wrapper stdout RESUME ====
2024-06-19 01:51:01 (677923): Guest Log: 2024-06-18 23:50:51,796 [wrapper] pilotpid: 6538
2024-06-19 01:51:01 (677923): Guest Log: 2024-06-18 23:50:51,799 [wrapper] Pilot exit status: 0
2024-06-19 01:51:01 (677923): Guest Log: 2024-06-18 23:50:51,830 [wrapper] pandaids: 6234304387
2024-06-19 01:51:01 (677923): Guest Log: 2024-06-18 23:50:51,845 [wrapper] cleanup supervisor_pilot 29738 6539
2024-06-19 01:51:01 (677923): Guest Log: 2024-06-18 23:50:51,848 [wrapper] Test setup, not cleaning
2024-06-19 01:51:01 (677923): Guest Log: 2024-06-18 23:50:51,850 [wrapper] ==== wrapper stdout END ====
2024-06-19 01:51:01 (677923): Guest Log: 2024-06-18 23:50:51,852 [wrapper] ==== wrapper stderr END ====
2024-06-19 01:51:01 (677923): Guest Log: 2024-06-18 23:50:51,857 [wrapper] apfmon messages muted
2024-06-19 01:51:01 (677923): Guest Log:  *** Error codes and diagnostics ***
2024-06-19 01:51:01 (677923): Guest Log:     "exeErrorCode": 0,
2024-06-19 01:51:01 (677923): Guest Log:     "exeErrorDiag": "",
2024-06-19 01:51:01 (677923): Guest Log:     "pilotErrorCode": 0,
2024-06-19 01:51:01 (677923): Guest Log:     "pilotErrorDiag": "",
2024-06-19 01:51:01 (677923): Guest Log:  *** Listing of results directory ***
2024-06-19 01:51:01 (677923): Guest Log: total 345184
2024-06-19 01:51:01 (677923): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 17 14:15 pilot3.tar.gz
2024-06-19 01:51:01 (677923): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 17 14:17 queuedata.json
2024-06-19 01:51:01 (677923): Guest Log: -rwx------. 1 atlas atlas     32308 Jun 17 14:18 runpilot2-wrapper.sh
2024-06-19 01:51:01 (677923): Guest Log: -rw-r--r--. 1 atlas atlas     17537 Jun 18 16:28 start_atlas.sh
2024-06-19 01:51:01 (677923): Guest Log: -rw-r--r--. 1 atlas atlas    482528 Jun 18 16:28 input.tar.gz
2024-06-19 01:51:01 (677923): Guest Log: -rw-r--r--. 1 atlas atlas      6889 Jun 18 16:28 init_data.xml
2024-06-19 01:51:01 (677923): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 18 16:28 EVNT.38776210._000984.pool.root.1 -> /data/./ATLAS.root_0
2024-06-19 01:51:01 (677923): Guest Log: -rw-r--r--. 1 atlas atlas      2647 Jun 18 16:30 pandaJob.out
2024-06-19 01:51:01 (677923): Guest Log: -rw-------. 1 atlas atlas       424 Jun 18 16:30 setup.sh.local
2024-06-19 01:51:01 (677923): Guest Log: -rw-------. 1 atlas atlas   1022103 Jun 18 16:31 agis_schedconf.cvmfs.json
2024-06-19 01:51:01 (677923): Guest Log: -rw-------. 1 atlas atlas   1317943 Jun 18 16:31 cric_ddmendpoints.json
2024-06-19 01:51:01 (677923): Guest Log: drwx------. 4 atlas atlas      4096 Jun 18 16:31 pilot3
2024-06-19 01:51:01 (677923): Guest Log: -rw-------. 1 atlas atlas 345951577 Jun 18 23:49 HITS.38921013._043963.pool.root.1
2024-06-19 01:51:01 (677923): Guest Log: -rw-------. 1 atlas atlas      1028 Jun 18 23:50 memory_monitor_summary.json
2024-06-19 01:51:01 (677923): Guest Log: -rw-------. 1 atlas atlas         0 Jun 18 23:50 agis_ddmendpoints.agis.ALL.json
2024-06-19 01:51:01 (677923): Guest Log: -rw-------. 1 atlas atlas    410704 Jun 18 23:50 log.38921013._043963.job.log.tgz.1
2024-06-19 01:51:01 (677923): Guest Log: -rw-------. 1 atlas atlas        95 Jun 18 23:50 pilot_heartbeat.json
2024-06-19 01:51:01 (677923): Guest Log: -rw-------. 1 atlas atlas      7741 Jun 18 23:50 heartbeat.json
2024-06-19 01:51:01 (677923): Guest Log: -rw-------. 1 atlas atlas      4343 Jun 18 23:50 pilotlog.txt
2024-06-19 01:51:01 (677923): Guest Log: -rw-------. 1 atlas atlas   1622006 Jun 18 23:50 log.38921013._043963.job.log.1
2024-06-19 01:51:01 (677923): Guest Log: -rw-------. 1 atlas atlas       357 Jun 18 23:50 output.list
2024-06-19 01:51:01 (677923): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 18 23:50 runtime_log
2024-06-19 01:51:01 (677923): Guest Log: -rw-------. 1 atlas atlas   2048000 Jun 18 23:50 result.tar.gz
2024-06-19 01:51:01 (677923): Guest Log: -rw-------. 1 atlas atlas       679 Jun 18 23:50 WphLDmSMSd5n9Rq4apOajLDm4fhM0noT9bVo2ijZDmrjVKDmCS2twn.diag
2024-06-19 01:51:01 (677923): Guest Log: -rw-r--r--. 1 atlas atlas     11024 Jun 18 23:50 runtime_log.err
2024-06-19 01:51:01 (677923): Guest Log: Looking for outputfile HITS.38921013._043963.pool.root.1
2024-06-19 01:51:01 (677923): Guest Log: HITS file was successfully produced
2024-06-19 01:51:01 (677923): Guest Log: -rw-------. 1 atlas atlas 345951577 Jun 18 23:49 /home/atlas/RunAtlas/HITS.38921013._043963.pool.root.1
2024-06-19 01:51:01 (677923): Guest Log: Successfully finished the ATLAS job!
2024-06-19 01:51:01 (677923): Guest Log: Copying the results back to the shared directory!
2024-06-19 01:51:01 (677923): Guest Log:  *** Contents of shared directory: ***
2024-06-19 01:51:01 (677923): Guest Log: total 528192
2024-06-19 01:51:01 (677923): Guest Log: -rw-r--r--. 1 root root 538300827 Jun 18 16:27 ATLAS.root_0
2024-06-19 01:51:01 (677923): Guest Log: -rw-r--r--. 1 root root      6889 Jun 18 16:27 init_data.xml
2024-06-19 01:51:01 (677923): Guest Log: -rw-r--r--. 1 root root    482528 Jun 18 16:27 input.tar.gz
2024-06-19 01:51:01 (677923): Guest Log: -rw-r--r--. 1 root root   2048000 Jun 18  2024 result.tar.gz
2024-06-19 01:51:01 (677923): Guest Log: -rw-r--r--. 1 root root     17537 Jun 18 16:27 start_atlas.sh
2024-06-19 01:51:01 (677923): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-19 01:51:01 (677923): VM Completion File Detected.
2024-06-19 01:51:01 (677923): Powering off VM.
2024-06-19 01:51:01 (677923): Successfully stopped VM.
2024-06-19 01:51:01 (677923): Deregistering VM. (boinc_5a0d6a074318a53e, slot#0)
2024-06-19 01:51:01 (677923): Removing network bandwidth throttle group from VM.
2024-06-19 01:51:01 (677923): Removing VM from VirtualBox.
01:51:06 (677923): called boinc_finish(0)

</stderr_txt>
]]>

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