Stderr output

<core_client_version>7.16.5</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-23 14:28:47 (6588): Detected: vboxwrapper 26206
2024-06-23 14:28:47 (6588): Detected: BOINC client v7.16.5
2024-06-23 14:28:48 (6588): Detected: VirtualBox VboxManage Interface (Version: 5.1.22)
2024-06-23 14:28:48 (6588): Successfully copied 'init_data.xml' to the shared directory.
2024-06-23 14:28:49 (6588): Create VM. (boinc_528558c970d95cdf, slot#2)
2024-06-23 14:28:49 (6588): Setting Memory Size for VM. (4400MB)
2024-06-23 14:28:50 (6588): Setting CPU Count for VM. (4)
2024-06-23 14:28:50 (6588): Setting Chipset Options for VM.
2024-06-23 14:28:50 (6588): Setting Graphics Controller Options for VM.
2024-06-23 14:28:50 (6588): Setting Boot Options for VM.
2024-06-23 14:28:51 (6588): Setting Network Configuration for NAT.
2024-06-23 14:28:51 (6588): Enabling VM Network Access.
2024-06-23 14:28:51 (6588): Disabling USB Support for VM.
2024-06-23 14:28:51 (6588): Disabling COM Port Support for VM.
2024-06-23 14:28:52 (6588): Disabling LPT Port Support for VM.
2024-06-23 14:28:52 (6588): Disabling Audio Support for VM.
2024-06-23 14:28:52 (6588): Disabling Clipboard Support for VM.
2024-06-23 14:28:52 (6588): Disabling Drag and Drop Support for VM.
2024-06-23 14:28:53 (6588): Adding storage controller(s) to VM.
2024-06-23 14:28:53 (6588): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-23 14:28:54 (6588): Adding VirtualBox Guest Additions to VM.
2024-06-23 14:28:54 (6588): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-23 14:28:54 (6588): forwarding host port 49999 to guest port 80
2024-06-23 14:28:54 (6588): Enabling remote desktop for VM.
2024-06-23 14:28:55 (6588): Enabling shared directory for VM.
2024-06-23 14:28:55 (6588): Starting VM using VBoxManage interface. (boinc_528558c970d95cdf, slot#2)
2024-06-23 14:28:59 (6588): Successfully started VM. (PID = '5288')
2024-06-23 14:28:59 (6588): Reporting VM Process ID to BOINC.
2024-06-23 14:28:59 (6588): Guest Log: BIOS: VirtualBox 5.1.22
2024-06-23 14:28:59 (6588): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-23 14:28:59 (6588): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-23 14:28:59 (6588): Detected: Web Application Enabled (http://localhost:49999)
2024-06-23 14:28:59 (6588): Detected: Remote Desktop Enabled (localhost:50001)
2024-06-23 14:28:59 (6588): Preference change detected
2024-06-23 14:28:59 (6588): Setting CPU throttle for VM. (100%)
2024-06-23 14:28:59 (6588): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-23 14:29:01 (6588): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-23 14:29:01 (6588): Guest Log: BIOS: Booting from Hard Disk...
2024-06-23 14:29:04 (6588): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-23 14:29:04 (6588): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-23 14:29:04 (6588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-23 14:29:04 (6588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-23 14:29:04 (6588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-23 14:29:04 (6588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-23 14:29:04 (6588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-23 14:29:04 (6588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-23 14:29:04 (6588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-23 14:29:04 (6588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-23 14:29:04 (6588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-23 14:29:04 (6588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-23 14:29:04 (6588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-23 14:29:04 (6588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-23 14:29:04 (6588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-23 14:29:04 (6588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-23 14:29:04 (6588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-23 14:29:04 (6588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-23 14:29:04 (6588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-23 14:29:04 (6588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-23 14:29:04 (6588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-23 14:29:04 (6588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-23 14:29:04 (6588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-23 14:29:04 (6588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-23 14:29:04 (6588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-23 14:29:04 (6588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-23 14:29:04 (6588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-23 14:29:04 (6588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-23 14:29:04 (6588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-23 14:29:04 (6588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-23 14:29:04 (6588): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-23 14:29:04 (6588): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-23 14:29:10 (6588): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-23 14:29:10 (6588): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-23 14:29:59 (6588): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-23 14:29:59 (6588): Guest Log: 00:00:00.000147 main     Log opened 2024-06-23T14:29:57.103084000Z
2024-06-23 14:29:59 (6588): Guest Log: 00:00:00.000233 main     OS Product: Linux
2024-06-23 14:29:59 (6588): Guest Log: 00:00:00.000275 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-23 14:29:59 (6588): Guest Log: 00:00:00.000303 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-23 14:29:59 (6588): Guest Log: 00:00:00.000329 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-23 14:29:59 (6588): Guest Log: 00:00:00.000330 main     Process ID: 1336
2024-06-23 14:29:59 (6588): Guest Log: 00:00:00.000330 main     Package type: LINUX_64BITS_GENERIC
2024-06-23 14:29:59 (6588): Guest Log: 00:00:00.001752 main     5.2.32 r132073 started. Verbose level = 0
2024-06-23 14:29:59 (6588): Guest Log: 00:00:00.002957 main     Error: Service 'control' failed to initialize: VERR_INVALID_PARAMETER
2024-06-23 14:29:59 (6588): Guest Log: 00:00:00.003058 main     Session 0 is about to close ...
2024-06-23 14:29:59 (6588): Guest Log: 00:00:00.003086 main     Stopping all guest processes ...
2024-06-23 14:29:59 (6588): Guest Log: 00:00:00.003113 main     Closing all guest files ...
2024-06-23 14:29:59 (6588): Guest Log: 00:00:00.003247 main     Ended.
2024-06-23 14:29:59 (6588): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-23 14:29:59 (6588): Guest Log: [INFO] Mounting shared directory
2024-06-23 14:30:00 (6588): Guest Log: [INFO] Checking for init_data.xml
2024-06-23 14:30:28 (6588): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-23 14:30:28 (6588): Guest Log: [INFO] Detected branch: prod
2024-06-23 14:31:18 (6588): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-23 14:31:18 (6588): Guest Log: Copying input files
2024-06-23 14:31:26 (6588): Guest Log: Copied input files into RunAtlas.
2024-06-23 14:31:26 (6588): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-06-23 14:31:26 (6588): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-06-23 14:31:26 (6588): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-06-23 14:31:26 (6588): Guest Log: Further information can be found at the LHC@home message board.
2024-06-23 14:31:42 (6588): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-23 14:31:43 (6588): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-23 14:31:43 (6588): Guest Log: 2.6.3.0 1629 1 30308 134201 4 1 3119737 4096000 0 65024 0 0 n/a 1141 1700 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-06-23 14:31:46 (6588): Guest Log: copied the webapp to /var/www
2024-06-23 14:31:46 (6588): Guest Log: ATHENA_PROC_NUMBER=4
2024-06-23 14:31:46 (6588): Guest Log: ATHENA_CORE_NUMBER=4
2024-06-23 14:31:47 (6588): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-23 14:31:47 (6588): Guest Log:  *** Starting ATLAS job. (PandaID=6234080973 taskID=38920987) ***
2024-06-23 16:08:59 (6588): Status Report: Elapsed Time: '6000.000000'
2024-06-23 16:08:59 (6588): Status Report: CPU Time: '19607.141686'
2024-06-23 17:49:00 (6588): Status Report: Elapsed Time: '12000.000000'
2024-06-23 17:49:00 (6588): Status Report: CPU Time: '43593.293842'
2024-06-23 19:29:00 (6588): Status Report: Elapsed Time: '18000.000000'
2024-06-23 19:29:00 (6588): Status Report: CPU Time: '67582.269617'
2024-06-23 21:09:01 (6588): Status Report: Elapsed Time: '24000.000000'
2024-06-23 21:09:01 (6588): Status Report: CPU Time: '91478.814799'
2024-06-23 21:54:02 (6588): Guest Log:  *** Job finished ***
2024-06-23 21:54:02 (6588): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-23 21:54:02 (6588): Guest Log: 2024-06-23 21:53:45,833 | INFO     | [data] queue_monitor thread has finished
2024-06-23 21:54:02 (6588): Guest Log: 2024-06-23 21:53:52,553 | INFO     | job.realtimelogging is not enabled
2024-06-23 21:54:02 (6588): Guest Log: 2024-06-23 21:53:53,555 | INFO     | [payload] run_realtimelog thread has finished
2024-06-23 21:54:02 (6588): Guest Log: 2024-06-23 21:53:55,062 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140244877432640)>', '<ExcThread(monitor, started 140243625830144)>']
2024-06-23 21:54:02 (6588): Guest Log: 2024-06-23 21:53:55,131 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-23 21:54:02 (6588): Guest Log: 2024-06-23 21:53:55,131 | INFO     | [monitor] control thread has ended
2024-06-23 21:54:02 (6588): Guest Log: 2024-06-23 21:54:00,084 | INFO     | all workflow threads have been joined
2024-06-23 21:54:02 (6588): Guest Log: 2024-06-23 21:54:00,085 | INFO     | end of generic workflow (traces error code: 0)
2024-06-23 21:54:02 (6588): Guest Log: 2024-06-23 21:54:00,085 | INFO     | traces error code: 0
2024-06-23 21:54:02 (6588): Guest Log: 2024-06-23 21:54:00,085 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-23 21:54:02 (6588): Guest Log: 2024-06-23 21:54:00,218 [wrapper] ==== pilot stdout END ====
2024-06-23 21:54:02 (6588): Guest Log: 2024-06-23 21:54:00,223 [wrapper] ==== wrapper stdout RESUME ====
2024-06-23 21:54:02 (6588): Guest Log: 2024-06-23 21:54:00,227 [wrapper] pilotpid: 6557
2024-06-23 21:54:02 (6588): Guest Log: 2024-06-23 21:54:00,231 [wrapper] Pilot exit status: 0
2024-06-23 21:54:02 (6588): Guest Log: 2024-06-23 21:54:00,334 [wrapper] pandaids: 6234080973
2024-06-23 21:54:02 (6588): Guest Log: 2024-06-23 21:54:00,361 [wrapper] cleanup supervisor_pilot 26948 6558
2024-06-23 21:54:02 (6588): Guest Log: 2024-06-23 21:54:00,366 [wrapper] Test setup, not cleaning
2024-06-23 21:54:02 (6588): Guest Log: 2024-06-23 21:54:00,370 [wrapper] ==== wrapper stdout END ====
2024-06-23 21:54:02 (6588): Guest Log: 2024-06-23 21:54:00,374 [wrapper] ==== wrapper stderr END ====
2024-06-23 21:54:02 (6588): Guest Log: 2024-06-23 21:54:00,382 [wrapper] apfmon messages muted
2024-06-23 21:54:02 (6588): Guest Log:  *** Error codes and diagnostics ***
2024-06-23 21:54:02 (6588): Guest Log:     "exeErrorCode": 0,
2024-06-23 21:54:02 (6588): Guest Log:     "exeErrorDiag": "",
2024-06-23 21:54:02 (6588): Guest Log:     "pilotErrorCode": 0,
2024-06-23 21:54:02 (6588): Guest Log:     "pilotErrorDiag": "",
2024-06-23 21:54:02 (6588): Guest Log:  *** Listing of results directory ***
2024-06-23 21:54:02 (6588): Guest Log: total 332176
2024-06-23 21:54:02 (6588): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 17 10:57 pilot3.tar.gz
2024-06-23 21:54:02 (6588): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 17 11:19 queuedata.json
2024-06-23 21:54:02 (6588): Guest Log: -rwx------. 1 atlas atlas     32308 Jun 17 11:19 runpilot2-wrapper.sh
2024-06-23 21:54:02 (6588): Guest Log: -rwxr-xr-x. 1 atlas atlas     10709 Jun 23 14:31 init_data.xml
2024-06-23 21:54:02 (6588): Guest Log: -rwxr-xr-x. 1 atlas atlas    482525 Jun 23 14:31 input.tar.gz
2024-06-23 21:54:02 (6588): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Jun 23 14:31 start_atlas.sh
2024-06-23 21:54:02 (6588): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 23 14:31 EVNT.38776170._000311.pool.root.1 -> /data/./ATLAS.root_0
2024-06-23 21:54:02 (6588): Guest Log: -rw-r--r--. 1 atlas atlas      2617 Jun 23 14:31 pandaJob.out
2024-06-23 21:54:02 (6588): Guest Log: -rw-------. 1 atlas atlas       424 Jun 23 14:31 setup.sh.local
2024-06-23 21:54:02 (6588): Guest Log: -rw-------. 1 atlas atlas   1025352 Jun 23 14:32 agis_schedconf.cvmfs.json
2024-06-23 21:54:02 (6588): Guest Log: -rw-------. 1 atlas atlas   1321363 Jun 23 14:32 cric_ddmendpoints.json
2024-06-23 21:54:02 (6588): Guest Log: drwx------. 4 atlas atlas      4096 Jun 23 14:32 pilot3
2024-06-23 21:54:02 (6588): Guest Log: -rw-------. 1 atlas atlas 331275741 Jun 23 21:50 HITS.38920987._058033.pool.root.1
2024-06-23 21:54:02 (6588): Guest Log: -rw-------. 1 atlas atlas      1047 Jun 23 21:51 memory_monitor_summary.json
2024-06-23 21:54:02 (6588): Guest Log: -rw-------. 1 atlas atlas         0 Jun 23 21:51 agis_ddmendpoints.agis.ALL.json
2024-06-23 21:54:02 (6588): Guest Log: -rw-------. 1 atlas atlas    429077 Jun 23 21:51 log.38920987._058033.job.log.tgz.1
2024-06-23 21:54:02 (6588): Guest Log: -rw-------. 1 atlas atlas        95 Jun 23 21:53 pilot_heartbeat.json
2024-06-23 21:54:02 (6588): Guest Log: -rw-------. 1 atlas atlas      7737 Jun 23 21:53 heartbeat.json
2024-06-23 21:54:02 (6588): Guest Log: -rw-------. 1 atlas atlas      4343 Jun 23 21:54 pilotlog.txt
2024-06-23 21:54:02 (6588): Guest Log: -rw-------. 1 atlas atlas   2270576 Jun 23 21:54 log.38920987._058033.job.log.1
2024-06-23 21:54:02 (6588): Guest Log: -rw-------. 1 atlas atlas       357 Jun 23 21:54 output.list
2024-06-23 21:54:02 (6588): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 23 21:54 runtime_log
2024-06-23 21:54:02 (6588): Guest Log: -rw-------. 1 atlas atlas   2723840 Jun 23 21:54 result.tar.gz
2024-06-23 21:54:02 (6588): Guest Log: -rw-r--r--. 1 atlas atlas     10937 Jun 23 21:54 runtime_log.err
2024-06-23 21:54:02 (6588): Guest Log: -rw-------. 1 atlas atlas       651 Jun 23 21:54 MCRMDmbZPd5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmbAiKDmTXRzpm.diag
2024-06-23 21:54:02 (6588): Guest Log: Looking for outputfile HITS.38920987._058033.pool.root.1
2024-06-23 21:54:02 (6588): Guest Log: HITS file was successfully produced
2024-06-23 21:54:02 (6588): Guest Log: -rw-------. 1 atlas atlas 331275741 Jun 23 21:50 /home/atlas/RunAtlas/HITS.38920987._058033.pool.root.1
2024-06-23 21:54:05 (6588): Guest Log: Successfully finished the ATLAS job!
2024-06-23 21:54:05 (6588): Guest Log: Copying the results back to the shared directory!
2024-06-23 21:54:05 (6588): Guest Log:  *** Contents of shared directory: ***
2024-06-23 21:54:05 (6588): Guest Log: total 951010
2024-06-23 21:54:05 (6588): Guest Log: -rwxrwxrwx. 1 root root 639322240 Jun 23 11:28 ATLAS.root_0
2024-06-23 21:54:05 (6588): Guest Log: -rwxrwxrwx. 1 root root 331275741 Jun 23 18:54 HITS.pool.root.1
2024-06-23 21:54:05 (6588): Guest Log: -rwxrwxrwx. 1 root root     10709 Jun 23 11:28 init_data.xml
2024-06-23 21:54:05 (6588): Guest Log: -rwxrwxrwx. 1 root root    482525 Jun 17 18:35 input.tar.gz
2024-06-23 21:54:05 (6588): Guest Log: -rwxrwxrwx. 1 root root   2723840 Jun 23 18:54 result.tar.gz
2024-06-23 21:54:05 (6588): Guest Log: -rwxrwxrwx. 1 root root     17537 Jun 17 18:35 start_atlas.sh
2024-06-23 21:54:05 (6588): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-23 21:54:05 (6588): VM Completion File Detected.
2024-06-23 21:54:05 (6588): Powering off VM.
2024-06-23 21:54:06 (6588): Successfully stopped VM.
2024-06-23 21:54:06 (6588): Deregistering VM. (boinc_528558c970d95cdf, slot#2)
2024-06-23 21:54:06 (6588): Removing network bandwidth throttle group from VM.
2024-06-23 21:54:06 (6588): Removing VM from VirtualBox.
21:54:15 (6588): called boinc_finish(0)

</stderr_txt>
]]>

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