Stderr output

<core_client_version>7.16.5</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-20 12:05:39 (15720): Detected: vboxwrapper 26206
2024-06-20 12:05:39 (15720): Detected: BOINC client v7.16.5
2024-06-20 12:05:40 (15720): Detected: VirtualBox VboxManage Interface (Version: 5.2.44)
2024-06-20 12:05:40 (15720): Successfully copied 'init_data.xml' to the shared directory.
2024-06-20 12:05:41 (15720): Create VM. (boinc_577786b8a796f7e2, slot#3)
2024-06-20 12:05:41 (15720): Setting Memory Size for VM. (4400MB)
2024-06-20 12:05:41 (15720): Setting CPU Count for VM. (4)
2024-06-20 12:05:42 (15720): Setting Chipset Options for VM.
2024-06-20 12:05:42 (15720): Setting Graphics Controller Options for VM.
2024-06-20 12:05:42 (15720): Setting Boot Options for VM.
2024-06-20 12:05:42 (15720): Setting Network Configuration for NAT.
2024-06-20 12:05:43 (15720): Enabling VM Network Access.
2024-06-20 12:05:43 (15720): Disabling USB Support for VM.
2024-06-20 12:05:43 (15720): Disabling COM Port Support for VM.
2024-06-20 12:05:43 (15720): Disabling LPT Port Support for VM.
2024-06-20 12:05:44 (15720): Disabling Audio Support for VM.
2024-06-20 12:05:44 (15720): Disabling Clipboard Support for VM.
2024-06-20 12:05:44 (15720): Disabling Drag and Drop Support for VM.
2024-06-20 12:05:44 (15720): Adding storage controller(s) to VM.
2024-06-20 12:05:45 (15720): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-20 12:05:45 (15720): Adding VirtualBox Guest Additions to VM.
2024-06-20 12:05:45 (15720): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-20 12:05:46 (15720): forwarding host port 60218 to guest port 80
2024-06-20 12:05:46 (15720): Enabling remote desktop for VM.
2024-06-20 12:05:46 (15720): Enabling shared directory for VM.
2024-06-20 12:05:47 (15720): Starting VM using VBoxManage interface. (boinc_577786b8a796f7e2, slot#3)
2024-06-20 12:05:51 (15720): Successfully started VM. (PID = '8976')
2024-06-20 12:05:51 (15720): Reporting VM Process ID to BOINC.
2024-06-20 12:05:51 (15720): Guest Log: BIOS: VirtualBox 5.2.44
2024-06-20 12:05:51 (15720): Guest Log: CPUID EDX: 0x178bfbff
2024-06-20 12:05:51 (15720): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-20 12:05:51 (15720): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-20 12:05:51 (15720): Detected: Web Application Enabled (http://localhost:60218)
2024-06-20 12:05:51 (15720): Detected: Remote Desktop Enabled (localhost:60219)
2024-06-20 12:05:51 (15720): Preference change detected
2024-06-20 12:05:51 (15720): Setting CPU throttle for VM. (100%)
2024-06-20 12:05:52 (15720): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-20 12:05:53 (15720): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-20 12:05:53 (15720): Guest Log: BIOS: Booting from Hard Disk...
2024-06-20 12:05:56 (15720): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-20 12:05:56 (15720): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-20 12:05:56 (15720): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-20 12:05:56 (15720): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-20 12:05:56 (15720): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-20 12:05:56 (15720): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-20 12:05:56 (15720): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-20 12:05:56 (15720): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-20 12:05:56 (15720): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-20 12:05:56 (15720): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-20 12:05:56 (15720): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-20 12:05:56 (15720): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-20 12:05:56 (15720): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-20 12:05:56 (15720): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-20 12:05:56 (15720): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-20 12:05:56 (15720): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-20 12:05:56 (15720): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-20 12:05:56 (15720): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-20 12:05:56 (15720): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-20 12:05:56 (15720): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-20 12:05:56 (15720): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-20 12:05:56 (15720): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-20 12:05:56 (15720): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-20 12:05:56 (15720): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-20 12:05:56 (15720): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-20 12:05:56 (15720): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-20 12:05:56 (15720): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-20 12:05:56 (15720): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-20 12:05:56 (15720): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-20 12:05:56 (15720): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-20 12:05:56 (15720): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-20 12:05:56 (15720): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-20 12:06:01 (15720): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-20 12:06:01 (15720): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-20 12:06:07 (15720): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-20 12:06:07 (15720): Guest Log: 00:00:00.000147 main     Log opened 2024-06-20T12:06:05.951330000Z
2024-06-20 12:06:07 (15720): Guest Log: 00:00:00.000240 main     OS Product: Linux
2024-06-20 12:06:07 (15720): Guest Log: 00:00:00.000306 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-20 12:06:07 (15720): Guest Log: 00:00:00.000335 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-20 12:06:07 (15720): Guest Log: 00:00:00.000355 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-20 12:06:07 (15720): Guest Log: 00:00:00.000356 main     Process ID: 1300
2024-06-20 12:06:07 (15720): Guest Log: 00:00:00.000356 main     Package type: LINUX_64BITS_GENERIC
2024-06-20 12:06:07 (15720): Guest Log: 00:00:00.001513 main     5.2.32 r132073 started. Verbose level = 0
2024-06-20 12:06:07 (15720): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-20 12:06:07 (15720): Guest Log: [INFO] Mounting shared directory
2024-06-20 12:06:08 (15720): Guest Log: [INFO] Checking for init_data.xml
2024-06-20 12:06:11 (15720): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-20 12:06:11 (15720): Guest Log: [INFO] Detected branch: prod
2024-06-20 12:06:11 (15720): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-20 12:06:11 (15720): Guest Log: Copying input files
2024-06-20 12:06:16 (15720): Guest Log: Copied input files into RunAtlas.
2024-06-20 12:06:16 (15720): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-06-20 12:06:16 (15720): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-06-20 12:06:16 (15720): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-06-20 12:06:16 (15720): Guest Log: Further information can be found at the LHC@home message board.
2024-06-20 12:06:17 (15720): Guest Log: 00:00:10.003875 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 788 526 385 000ns (GuestNow=1 718 874 377 427 811 000 ns GuestLast=1 718 885 165 954 196 000 ns fSetTimeLastLoop=true )
2024-06-20 12:07:16 (15720): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-20 12:07:16 (15720): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-20 12:07:16 (15720): Guest Log: 2.6.3.0 1575 1 32212 134086 4 1 3117205 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-06-20 12:07:17 (15720): Guest Log: copied the webapp to /var/www
2024-06-20 12:07:17 (15720): Guest Log: ATHENA_PROC_NUMBER=4
2024-06-20 12:07:17 (15720): Guest Log: ATHENA_CORE_NUMBER=4
2024-06-20 12:07:17 (15720): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-20 12:07:17 (15720): Guest Log:  *** Starting ATLAS job. (PandaID=6234055607 taskID=38921001) ***
2024-06-20 13:45:55 (15720): Status Report: Elapsed Time: '6000.000000'
2024-06-20 13:45:55 (15720): Status Report: CPU Time: '18338.437500'
2024-06-20 15:25:59 (15720): Status Report: Elapsed Time: '12000.000000'
2024-06-20 15:25:59 (15720): Status Report: CPU Time: '42195.468750'
2024-06-20 17:06:03 (15720): Status Report: Elapsed Time: '18000.000000'
2024-06-20 17:06:03 (15720): Status Report: CPU Time: '66050.703125'
2024-06-20 18:46:07 (15720): Status Report: Elapsed Time: '24000.000000'
2024-06-20 18:46:07 (15720): Status Report: CPU Time: '88985.265625'
2024-06-20 20:26:10 (15720): Status Report: Elapsed Time: '30000.000000'
2024-06-20 20:26:10 (15720): Status Report: CPU Time: '109211.406250'
2024-06-20 22:06:14 (15720): Status Report: Elapsed Time: '36000.000000'
2024-06-20 22:06:14 (15720): Status Report: CPU Time: '130982.234375'
2024-06-20 23:46:18 (15720): Status Report: Elapsed Time: '42000.000000'
2024-06-20 23:46:18 (15720): Status Report: CPU Time: '154908.203125'
2024-06-21 00:10:28 (15720): Guest Log:  *** Job finished ***
2024-06-21 00:10:28 (15720): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-21 00:10:28 (15720): Guest Log: 2024-06-20 21:10:14,642 | INFO     | [data] queue_monitor thread has finished
2024-06-21 00:10:28 (15720): Guest Log: 2024-06-20 21:10:20,144 | INFO     | job.realtimelogging is not enabled
2024-06-21 00:10:28 (15720): Guest Log: 2024-06-20 21:10:21,145 | INFO     | [payload] run_realtimelog thread has finished
2024-06-21 00:10:28 (15720): Guest Log: 2024-06-20 21:10:22,687 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140021616961344)>', '<ExcThread(monitor, started 140020363032320)>']
2024-06-21 00:10:28 (15720): Guest Log: 2024-06-20 21:10:22,876 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-21 00:10:28 (15720): Guest Log: 2024-06-20 21:10:22,876 | INFO     | [monitor] control thread has ended
2024-06-21 00:10:28 (15720): Guest Log: 2024-06-20 21:10:27,746 | INFO     | all workflow threads have been joined
2024-06-21 00:10:28 (15720): Guest Log: 2024-06-20 21:10:27,747 | INFO     | end of generic workflow (traces error code: 0)
2024-06-21 00:10:28 (15720): Guest Log: 2024-06-20 21:10:27,747 | INFO     | traces error code: 0
2024-06-21 00:10:28 (15720): Guest Log: 2024-06-20 21:10:27,747 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-21 00:10:28 (15720): Guest Log: 2024-06-20 21:10:27,859 [wrapper] ==== pilot stdout END ====
2024-06-21 00:10:28 (15720): Guest Log: 2024-06-20 21:10:27,865 [wrapper] ==== wrapper stdout RESUME ====
2024-06-21 00:10:28 (15720): Guest Log: 2024-06-20 21:10:27,870 [wrapper] pilotpid: 6501
2024-06-21 00:10:28 (15720): Guest Log: 2024-06-20 21:10:27,876 [wrapper] Pilot exit status: 0
2024-06-21 00:10:28 (15720): Guest Log: 2024-06-20 21:10:27,963 [wrapper] pandaids: 6234055607
2024-06-21 00:10:28 (15720): Guest Log: 2024-06-20 21:10:28,000 [wrapper] cleanup supervisor_pilot 26911 6502
2024-06-21 00:10:28 (15720): Guest Log: 2024-06-20 21:10:28,006 [wrapper] Test setup, not cleaning
2024-06-21 00:10:28 (15720): Guest Log: 2024-06-20 21:10:28,012 [wrapper] ==== wrapper stdout END ====
2024-06-21 00:10:28 (15720): Guest Log: 2024-06-20 21:10:28,017 [wrapper] ==== wrapper stderr END ====
2024-06-21 00:10:28 (15720): Guest Log: 2024-06-20 21:10:28,028 [wrapper] apfmon messages muted
2024-06-21 00:10:28 (15720): Guest Log:  *** Error codes and diagnostics ***
2024-06-21 00:10:28 (15720): Guest Log:     "exeErrorCode": 0,
2024-06-21 00:10:28 (15720): Guest Log:     "exeErrorDiag": "",
2024-06-21 00:10:28 (15720): Guest Log:     "pilotErrorCode": 0,
2024-06-21 00:10:28 (15720): Guest Log:     "pilotErrorDiag": "",
2024-06-21 00:10:28 (15720): Guest Log:  *** Listing of results directory ***
2024-06-21 00:10:28 (15720): Guest Log: total 354432
2024-06-21 00:10:28 (15720): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 17 10:37 pilot3.tar.gz
2024-06-21 00:10:28 (15720): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 17 10:53 queuedata.json
2024-06-21 00:10:28 (15720): Guest Log: -rwx------. 1 atlas atlas     32308 Jun 17 10:57 runpilot2-wrapper.sh
2024-06-21 00:10:28 (15720): Guest Log: -rwxr-xr-x. 1 atlas atlas      8879 Jun 20 09:06 init_data.xml
2024-06-21 00:10:28 (15720): Guest Log: -rwxr-xr-x. 1 atlas atlas    482541 Jun 20 09:06 input.tar.gz
2024-06-21 00:10:28 (15720): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Jun 20 09:06 start_atlas.sh
2024-06-21 00:10:28 (15720): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 20 09:06 EVNT.38776190._000437.pool.root.1 -> /data/./ATLAS.root_0
2024-06-21 00:10:28 (15720): Guest Log: -rw-r--r--. 1 atlas atlas      2655 Jun 20 09:07 pandaJob.out
2024-06-21 00:10:28 (15720): Guest Log: -rw-------. 1 atlas atlas       424 Jun 20 09:07 setup.sh.local
2024-06-21 00:10:28 (15720): Guest Log: -rw-------. 1 atlas atlas   1015537 Jun 20 09:10 agis_schedconf.cvmfs.json
2024-06-21 00:10:28 (15720): Guest Log: -rw-------. 1 atlas atlas   1321254 Jun 20 09:10 cric_ddmendpoints.json
2024-06-21 00:10:28 (15720): Guest Log: drwx------. 4 atlas atlas      4096 Jun 20 09:10 pilot3
2024-06-21 00:10:28 (15720): Guest Log: -rw-------. 1 atlas atlas 347414932 Jun 20 21:09 HITS.38921001._060216.pool.root.1
2024-06-21 00:10:28 (15720): Guest Log: -rw-------. 1 atlas atlas        95 Jun 20 21:09 pilot_heartbeat.json
2024-06-21 00:10:28 (15720): Guest Log: -rw-------. 1 atlas atlas      1029 Jun 20 21:09 memory_monitor_summary.json
2024-06-21 00:10:28 (15720): Guest Log: -rw-------. 1 atlas atlas         0 Jun 20 21:09 agis_ddmendpoints.agis.ALL.json
2024-06-21 00:10:28 (15720): Guest Log: -rw-------. 1 atlas atlas    622104 Jun 20 21:09 log.38921001._060216.job.log.tgz.1
2024-06-21 00:10:28 (15720): Guest Log: -rw-------. 1 atlas atlas      7746 Jun 20 21:10 heartbeat.json
2024-06-21 00:10:28 (15720): Guest Log: -rw-------. 1 atlas atlas      4652 Jun 20 21:10 pilotlog.txt
2024-06-21 00:10:28 (15720): Guest Log: -rw-------. 1 atlas atlas   5408400 Jun 20 21:10 log.38921001._060216.job.log.1
2024-06-21 00:10:28 (15720): Guest Log: -rw-------. 1 atlas atlas       357 Jun 20 21:10 output.list
2024-06-21 00:10:28 (15720): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 20 21:10 runtime_log
2024-06-21 00:10:28 (15720): Guest Log: -rw-------. 1 atlas atlas   6051840 Jun 20 21:10 result.tar.gz
2024-06-21 00:10:28 (15720): Guest Log: -rw-------. 1 atlas atlas       663 Jun 20 21:10 WkjLDmQEPd5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmo9hKDm3idONn.diag
2024-06-21 00:10:28 (15720): Guest Log: -rw-r--r--. 1 atlas atlas     10967 Jun 20 21:10 runtime_log.err
2024-06-21 00:10:28 (15720): Guest Log: Looking for outputfile HITS.38921001._060216.pool.root.1
2024-06-21 00:10:28 (15720): Guest Log: HITS file was successfully produced
2024-06-21 00:10:28 (15720): Guest Log: -rw-------. 1 atlas atlas 347414932 Jun 20 21:09 /home/atlas/RunAtlas/HITS.38921001._060216.pool.root.1
2024-06-21 00:10:31 (15720): Guest Log: Successfully finished the ATLAS job!
2024-06-21 00:10:31 (15720): Guest Log: Copying the results back to the shared directory!
2024-06-21 00:10:31 (15720): Guest Log:  *** Contents of shared directory: ***
2024-06-21 00:10:31 (15720): Guest Log: total 947648
2024-06-21 00:10:31 (15720): Guest Log: -rwxrwxrwx. 1 root root 616400723 Jun 20 09:05 ATLAS.root_0
2024-06-21 00:10:31 (15720): Guest Log: -rwxrwxrwx. 1 root root 347414932 Jun 20 21:10 HITS.pool.root.1
2024-06-21 00:10:31 (15720): Guest Log: -rwxrwxrwx. 1 root root      8879 Jun 20 09:05 init_data.xml
2024-06-21 00:10:31 (15720): Guest Log: -rwxrwxrwx. 1 root root    482541 Jun 17 18:43 input.tar.gz
2024-06-21 00:10:31 (15720): Guest Log: -rwxrwxrwx. 1 root root   6051840 Jun 20 21:10 result.tar.gz
2024-06-21 00:10:31 (15720): Guest Log: -rwxrwxrwx. 1 root root     17537 Jun 17 18:43 start_atlas.sh
2024-06-21 00:10:31 (15720): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-21 00:10:31 (15720): VM Completion File Detected.
2024-06-21 00:10:31 (15720): Powering off VM.
2024-06-21 00:10:32 (15720): Successfully stopped VM.
2024-06-21 00:10:32 (15720): Deregistering VM. (boinc_577786b8a796f7e2, slot#3)
2024-06-21 00:10:32 (15720): Removing network bandwidth throttle group from VM.
2024-06-21 00:10:32 (15720): Removing VM from VirtualBox.
00:10:38 (15720): called boinc_finish(0)

</stderr_txt>
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