Stderr output

<core_client_version>7.16.5</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-19 02:28:12 (4612): Detected: vboxwrapper 26206
2024-06-19 02:28:12 (4612): Detected: BOINC client v7.16.5
2024-06-19 02:28:12 (4612): Detected: VirtualBox VboxManage Interface (Version: 5.2.44)
2024-06-19 02:28:13 (4612): Successfully copied 'init_data.xml' to the shared directory.
2024-06-19 02:28:13 (4612): Create VM. (boinc_f04136f214a1a508, slot#2)
2024-06-19 02:28:14 (4612): Setting Memory Size for VM. (4400MB)
2024-06-19 02:28:14 (4612): Setting CPU Count for VM. (4)
2024-06-19 02:28:14 (4612): Setting Chipset Options for VM.
2024-06-19 02:28:14 (4612): Setting Graphics Controller Options for VM.
2024-06-19 02:28:15 (4612): Setting Boot Options for VM.
2024-06-19 02:28:15 (4612): Setting Network Configuration for NAT.
2024-06-19 02:28:15 (4612): Enabling VM Network Access.
2024-06-19 02:28:16 (4612): Disabling USB Support for VM.
2024-06-19 02:28:16 (4612): Disabling COM Port Support for VM.
2024-06-19 02:28:16 (4612): Disabling LPT Port Support for VM.
2024-06-19 02:28:16 (4612): Disabling Audio Support for VM.
2024-06-19 02:28:17 (4612): Disabling Clipboard Support for VM.
2024-06-19 02:28:17 (4612): Disabling Drag and Drop Support for VM.
2024-06-19 02:28:17 (4612): Adding storage controller(s) to VM.
2024-06-19 02:28:17 (4612): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-19 02:28:18 (4612): Adding VirtualBox Guest Additions to VM.
2024-06-19 02:28:18 (4612): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-19 02:28:18 (4612): forwarding host port 57565 to guest port 80
2024-06-19 02:28:19 (4612): Enabling remote desktop for VM.
2024-06-19 02:28:19 (4612): Enabling shared directory for VM.
2024-06-19 02:28:20 (4612): Starting VM using VBoxManage interface. (boinc_f04136f214a1a508, slot#2)
2024-06-19 02:28:24 (4612): Successfully started VM. (PID = '13852')
2024-06-19 02:28:24 (4612): Reporting VM Process ID to BOINC.
2024-06-19 02:28:24 (4612): Guest Log: BIOS: VirtualBox 5.2.44
2024-06-19 02:28:24 (4612): Guest Log: CPUID EDX: 0x178bfbff
2024-06-19 02:28:24 (4612): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-19 02:28:24 (4612): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-19 02:28:24 (4612): Detected: Web Application Enabled (http://localhost:57565)
2024-06-19 02:28:24 (4612): Detected: Remote Desktop Enabled (localhost:57566)
2024-06-19 02:28:24 (4612): Preference change detected
2024-06-19 02:28:24 (4612): Setting CPU throttle for VM. (100%)
2024-06-19 02:28:24 (4612): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-19 02:28:26 (4612): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-19 02:28:26 (4612): Guest Log: BIOS: Booting from Hard Disk...
2024-06-19 02:28:29 (4612): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-19 02:28:29 (4612): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-19 02:28:29 (4612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-19 02:28:29 (4612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-19 02:28:29 (4612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-19 02:28:29 (4612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-19 02:28:29 (4612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-19 02:28:29 (4612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-19 02:28:29 (4612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-19 02:28:29 (4612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-19 02:28:29 (4612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-19 02:28:29 (4612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-19 02:28:29 (4612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-19 02:28:29 (4612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-19 02:28:29 (4612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-19 02:28:29 (4612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-19 02:28:29 (4612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-19 02:28:29 (4612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-19 02:28:29 (4612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-19 02:28:29 (4612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-19 02:28:29 (4612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-19 02:28:29 (4612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-19 02:28:29 (4612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-19 02:28:29 (4612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-19 02:28:29 (4612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-19 02:28:29 (4612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-19 02:28:29 (4612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-19 02:28:29 (4612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-19 02:28:29 (4612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-19 02:28:29 (4612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-19 02:28:29 (4612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-19 02:28:29 (4612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-19 02:28:36 (4612): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-19 02:28:36 (4612): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-19 02:28:42 (4612): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-19 02:28:42 (4612): Guest Log: 00:00:00.000161 main     Log opened 2024-06-19T02:28:40.718334000Z
2024-06-19 02:28:42 (4612): Guest Log: 00:00:00.000257 main     OS Product: Linux
2024-06-19 02:28:42 (4612): Guest Log: 00:00:00.000288 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-19 02:28:42 (4612): Guest Log: 00:00:00.000311 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-19 02:28:42 (4612): Guest Log: 00:00:00.000332 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-19 02:28:42 (4612): Guest Log: 00:00:00.000332 main     Process ID: 1304
2024-06-19 02:28:42 (4612): Guest Log: 00:00:00.000333 main     Package type: LINUX_64BITS_GENERIC
2024-06-19 02:28:42 (4612): Guest Log: 00:00:00.001513 main     5.2.32 r132073 started. Verbose level = 0
2024-06-19 02:28:42 (4612): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-19 02:28:42 (4612): Guest Log: [INFO] Mounting shared directory
2024-06-19 02:28:42 (4612): Guest Log: [INFO] Checking for init_data.xml
2024-06-19 02:28:47 (4612): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-19 02:28:47 (4612): Guest Log: [INFO] Detected branch: prod
2024-06-19 02:28:47 (4612): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-19 02:28:47 (4612): Guest Log: Copying input files
2024-06-19 02:28:52 (4612): Guest Log: Copied input files into RunAtlas.
2024-06-19 02:28:52 (4612): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-06-19 02:28:52 (4612): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-06-19 02:28:52 (4612): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-06-19 02:28:52 (4612): Guest Log: Further information can be found at the LHC@home message board.
2024-06-19 02:28:52 (4612): Guest Log: 00:00:10.004714 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 788 344 723 000ns (GuestNow=1 718 753 332 376 560 000 ns GuestLast=1 718 764 120 721 283 000 ns fSetTimeLastLoop=true )
2024-06-19 02:30:19 (4612): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-19 02:30:19 (4612): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-19 02:30:19 (4612): Guest Log: 2.6.3.0 1580 1 32352 134031 4 1 3119736 4096000 0 65024 0 0 n/a 1141 26 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-06-19 02:30:20 (4612): Guest Log: copied the webapp to /var/www
2024-06-19 02:30:20 (4612): Guest Log: ATHENA_PROC_NUMBER=4
2024-06-19 02:30:20 (4612): Guest Log: ATHENA_CORE_NUMBER=4
2024-06-19 02:30:20 (4612): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-19 02:30:20 (4612): Guest Log:  *** Starting ATLAS job. (PandaID=6231881958 taskID=38921007) ***
2024-06-19 04:08:31 (4612): Status Report: Elapsed Time: '6000.000000'
2024-06-19 04:08:31 (4612): Status Report: CPU Time: '18746.890625'
2024-06-19 05:48:34 (4612): Status Report: Elapsed Time: '12000.000000'
2024-06-19 05:48:34 (4612): Status Report: CPU Time: '39696.031250'
2024-06-19 07:28:37 (4612): Status Report: Elapsed Time: '18000.000000'
2024-06-19 07:28:37 (4612): Status Report: CPU Time: '58957.046875'
2024-06-19 09:08:41 (4612): Status Report: Elapsed Time: '24000.000000'
2024-06-19 09:08:41 (4612): Status Report: CPU Time: '78891.515625'
2024-06-19 10:48:44 (4612): Status Report: Elapsed Time: '30000.000000'
2024-06-19 10:48:44 (4612): Status Report: CPU Time: '98385.765625'
2024-06-19 12:28:48 (4612): Status Report: Elapsed Time: '36000.000000'
2024-06-19 12:28:48 (4612): Status Report: CPU Time: '117925.765625'
2024-06-19 14:08:51 (4612): Status Report: Elapsed Time: '42000.000000'
2024-06-19 14:08:51 (4612): Status Report: CPU Time: '137173.359375'
2024-06-19 15:48:55 (4612): Status Report: Elapsed Time: '48000.000000'
2024-06-19 15:48:55 (4612): Status Report: CPU Time: '158566.406250'
2024-06-19 17:17:50 (4612): Guest Log:  *** Job finished ***
2024-06-19 17:17:50 (4612): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-19 17:17:50 (4612): Guest Log: 2024-06-19 14:17:36,377 | INFO     | [data] queue_monitor thread has finished
2024-06-19 17:17:50 (4612): Guest Log: 2024-06-19 14:17:42,196 | INFO     | job.realtimelogging is not enabled
2024-06-19 17:17:50 (4612): Guest Log: 2024-06-19 14:17:43,243 | INFO     | [payload] run_realtimelog thread has finished
2024-06-19 17:17:50 (4612): Guest Log: 2024-06-19 14:17:43,764 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140478030354240)>', '<ExcThread(monitor, started 140477290501888)>']
2024-06-19 17:17:50 (4612): Guest Log: 2024-06-19 14:17:44,669 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-19 17:17:50 (4612): Guest Log: 2024-06-19 14:17:44,670 | INFO     | [monitor] control thread has ended
2024-06-19 17:17:50 (4612): Guest Log: 2024-06-19 14:17:48,805 | INFO     | all workflow threads have been joined
2024-06-19 17:17:50 (4612): Guest Log: 2024-06-19 14:17:48,805 | INFO     | end of generic workflow (traces error code: 0)
2024-06-19 17:17:50 (4612): Guest Log: 2024-06-19 14:17:48,805 | INFO     | traces error code: 0
2024-06-19 17:17:50 (4612): Guest Log: 2024-06-19 14:17:48,805 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-19 17:17:50 (4612): Guest Log: 2024-06-19 14:17:48,920 [wrapper] ==== pilot stdout END ====
2024-06-19 17:17:50 (4612): Guest Log: 2024-06-19 14:17:48,927 [wrapper] ==== wrapper stdout RESUME ====
2024-06-19 17:17:50 (4612): Guest Log: 2024-06-19 14:17:48,933 [wrapper] pilotpid: 6498
2024-06-19 17:17:50 (4612): Guest Log: 2024-06-19 14:17:48,938 [wrapper] Pilot exit status: 0
2024-06-19 17:17:50 (4612): Guest Log: 2024-06-19 14:17:49,052 [wrapper] pandaids: 6231881958
2024-06-19 17:17:50 (4612): Guest Log: 2024-06-19 14:17:49,088 [wrapper] cleanup supervisor_pilot 10270 6499
2024-06-19 17:17:50 (4612): Guest Log: 2024-06-19 14:17:49,094 [wrapper] Test setup, not cleaning
2024-06-19 17:17:50 (4612): Guest Log: 2024-06-19 14:17:49,100 [wrapper] ==== wrapper stdout END ====
2024-06-19 17:17:50 (4612): Guest Log: 2024-06-19 14:17:49,105 [wrapper] ==== wrapper stderr END ====
2024-06-19 17:17:50 (4612): Guest Log: 2024-06-19 14:17:49,117 [wrapper] apfmon messages muted
2024-06-19 17:17:50 (4612): Guest Log:  *** Error codes and diagnostics ***
2024-06-19 17:17:50 (4612): Guest Log:     "exeErrorCode": 0,
2024-06-19 17:17:50 (4612): Guest Log:     "exeErrorDiag": "",
2024-06-19 17:17:50 (4612): Guest Log:     "pilotErrorCode": 0,
2024-06-19 17:17:50 (4612): Guest Log:     "pilotErrorDiag": "",
2024-06-19 17:17:50 (4612): Guest Log:  *** Listing of results directory ***
2024-06-19 17:17:50 (4612): Guest Log: total 364892
2024-06-19 17:17:50 (4612): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 16 01:18 pilot3.tar.gz
2024-06-19 17:17:50 (4612): Guest Log: -rwx------. 1 atlas atlas     32308 Jun 16 01:36 runpilot2-wrapper.sh
2024-06-19 17:17:50 (4612): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 16 01:36 queuedata.json
2024-06-19 17:17:50 (4612): Guest Log: -rwxr-xr-x. 1 atlas atlas      8879 Jun 18 23:28 init_data.xml
2024-06-19 17:17:50 (4612): Guest Log: -rwxr-xr-x. 1 atlas atlas    482536 Jun 18 23:28 input.tar.gz
2024-06-19 17:17:50 (4612): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Jun 18 23:28 start_atlas.sh
2024-06-19 17:17:50 (4612): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 18 23:28 EVNT.38776201._000964.pool.root.1 -> /data/./ATLAS.root_0
2024-06-19 17:17:50 (4612): Guest Log: -rw-r--r--. 1 atlas atlas      2631 Jun 18 23:30 pandaJob.out
2024-06-19 17:17:50 (4612): Guest Log: -rw-------. 1 atlas atlas       424 Jun 18 23:30 setup.sh.local
2024-06-19 17:17:50 (4612): Guest Log: -rw-------. 1 atlas atlas   1023167 Jun 18 23:32 agis_schedconf.cvmfs.json
2024-06-19 17:17:50 (4612): Guest Log: -rw-------. 1 atlas atlas   1317943 Jun 18 23:32 cric_ddmendpoints.json
2024-06-19 17:17:50 (4612): Guest Log: drwx------. 4 atlas atlas      4096 Jun 18 23:32 pilot3
2024-06-19 17:17:50 (4612): Guest Log: -rw-------. 1 atlas atlas 357585126 Jun 19 14:14 HITS.38921007._043806.pool.root.1
2024-06-19 17:17:50 (4612): Guest Log: -rw-------. 1 atlas atlas      1030 Jun 19 14:16 memory_monitor_summary.json
2024-06-19 17:17:50 (4612): Guest Log: -rw-------. 1 atlas atlas         0 Jun 19 14:16 agis_ddmendpoints.agis.ALL.json
2024-06-19 17:17:50 (4612): Guest Log: -rw-------. 1 atlas atlas    711808 Jun 19 14:16 log.38921007._043806.job.log.tgz.1
2024-06-19 17:17:50 (4612): Guest Log: -rw-------. 1 atlas atlas      7749 Jun 19 14:17 heartbeat.json
2024-06-19 17:17:50 (4612): Guest Log: -rw-------. 1 atlas atlas        95 Jun 19 14:17 pilot_heartbeat.json
2024-06-19 17:17:50 (4612): Guest Log: -rw-------. 1 atlas atlas      4343 Jun 19 14:17 pilotlog.txt
2024-06-19 17:17:50 (4612): Guest Log: -rw-------. 1 atlas atlas   5590281 Jun 19 14:17 log.38921007._043806.job.log.1
2024-06-19 17:17:50 (4612): Guest Log: -rw-------. 1 atlas atlas       357 Jun 19 14:17 output.list
2024-06-19 17:17:50 (4612): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 19 14:17 runtime_log
2024-06-19 17:17:50 (4612): Guest Log: -rw-------. 1 atlas atlas   6318080 Jun 19 14:17 result.tar.gz
2024-06-19 17:17:50 (4612): Guest Log: -rw-------. 1 atlas atlas       663 Jun 19 14:17 ts5MDmeztc5n9Rq4apOajLDm4fhM0noT9bVo2ijZDmtsUKDmboCjcm.diag
2024-06-19 17:17:50 (4612): Guest Log: -rw-r--r--. 1 atlas atlas     10967 Jun 19 14:17 runtime_log.err
2024-06-19 17:17:50 (4612): Guest Log: Looking for outputfile HITS.38921007._043806.pool.root.1
2024-06-19 17:17:50 (4612): Guest Log: HITS file was successfully produced
2024-06-19 17:17:50 (4612): Guest Log: -rw-------. 1 atlas atlas 357585126 Jun 19 14:14 /home/atlas/RunAtlas/HITS.38921007._043806.pool.root.1
2024-06-19 17:17:52 (4612): Guest Log: Successfully finished the ATLAS job!
2024-06-19 17:17:52 (4612): Guest Log: Copying the results back to the shared directory!
2024-06-19 17:17:52 (4612): Guest Log:  *** Contents of shared directory: ***
2024-06-19 17:17:52 (4612): Guest Log: total 926052
2024-06-19 17:17:52 (4612): Guest Log: -rwxrwxrwx. 1 root root 583848849 Jun 18 23:28 ATLAS.root_0
2024-06-19 17:17:52 (4612): Guest Log: -rwxrwxrwx. 1 root root 357585126 Jun 19 14:17 HITS.pool.root.1
2024-06-19 17:17:52 (4612): Guest Log: -rwxrwxrwx. 1 root root      8879 Jun 18 23:28 init_data.xml
2024-06-19 17:17:52 (4612): Guest Log: -rwxrwxrwx. 1 root root    482536 Jun 16 08:13 input.tar.gz
2024-06-19 17:17:52 (4612): Guest Log: -rwxrwxrwx. 1 root root   6318080 Jun 19 14:17 result.tar.gz
2024-06-19 17:17:52 (4612): Guest Log: -rwxrwxrwx. 1 root root     17537 Jun 16 08:13 start_atlas.sh
2024-06-19 17:17:52 (4612): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-19 17:17:52 (4612): VM Completion File Detected.
2024-06-19 17:17:52 (4612): Powering off VM.
2024-06-19 17:17:53 (4612): Successfully stopped VM.
2024-06-19 17:17:53 (4612): Deregistering VM. (boinc_f04136f214a1a508, slot#2)
2024-06-19 17:17:53 (4612): Removing network bandwidth throttle group from VM.
2024-06-19 17:17:53 (4612): Removing VM from VirtualBox.
17:17:58 (4612): called boinc_finish(0)

</stderr_txt>
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