Stderr output

<core_client_version>7.16.5</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-18 23:02:15 (11812): Detected: vboxwrapper 26206
2024-06-18 23:02:15 (11812): Detected: BOINC client v7.16.5
2024-06-18 23:02:16 (11812): Detected: VirtualBox VboxManage Interface (Version: 5.2.44)
2024-06-18 23:02:16 (11812): Successfully copied 'init_data.xml' to the shared directory.
2024-06-18 23:02:17 (11812): Create VM. (boinc_7dcba9f7ef70f8da, slot#3)
2024-06-18 23:02:17 (11812): Setting Memory Size for VM. (4400MB)
2024-06-18 23:02:17 (11812): Setting CPU Count for VM. (4)
2024-06-18 23:02:18 (11812): Setting Chipset Options for VM.
2024-06-18 23:02:18 (11812): Setting Graphics Controller Options for VM.
2024-06-18 23:02:18 (11812): Setting Boot Options for VM.
2024-06-18 23:02:18 (11812): Setting Network Configuration for NAT.
2024-06-18 23:02:19 (11812): Enabling VM Network Access.
2024-06-18 23:02:19 (11812): Disabling USB Support for VM.
2024-06-18 23:02:19 (11812): Disabling COM Port Support for VM.
2024-06-18 23:02:19 (11812): Disabling LPT Port Support for VM.
2024-06-18 23:02:20 (11812): Disabling Audio Support for VM.
2024-06-18 23:02:20 (11812): Disabling Clipboard Support for VM.
2024-06-18 23:02:20 (11812): Disabling Drag and Drop Support for VM.
2024-06-18 23:02:20 (11812): Adding storage controller(s) to VM.
2024-06-18 23:02:21 (11812): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-18 23:02:21 (11812): Adding VirtualBox Guest Additions to VM.
2024-06-18 23:02:21 (11812): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-18 23:02:22 (11812): forwarding host port 56681 to guest port 80
2024-06-18 23:02:22 (11812): Enabling remote desktop for VM.
2024-06-18 23:02:22 (11812): Enabling shared directory for VM.
2024-06-18 23:02:23 (11812): Starting VM using VBoxManage interface. (boinc_7dcba9f7ef70f8da, slot#3)
2024-06-18 23:02:27 (11812): Successfully started VM. (PID = '13984')
2024-06-18 23:02:27 (11812): Reporting VM Process ID to BOINC.
2024-06-18 23:02:27 (11812): Guest Log: BIOS: VirtualBox 5.2.44
2024-06-18 23:02:27 (11812): Guest Log: CPUID EDX: 0x178bfbff
2024-06-18 23:02:27 (11812): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-18 23:02:27 (11812): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-18 23:02:27 (11812): Detected: Web Application Enabled (http://localhost:56681)
2024-06-18 23:02:27 (11812): Detected: Remote Desktop Enabled (localhost:56682)
2024-06-18 23:02:27 (11812): Preference change detected
2024-06-18 23:02:27 (11812): Setting CPU throttle for VM. (100%)
2024-06-18 23:02:28 (11812): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-18 23:02:29 (11812): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-18 23:02:29 (11812): Guest Log: BIOS: Booting from Hard Disk...
2024-06-18 23:02:32 (11812): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-18 23:02:32 (11812): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-18 23:02:32 (11812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-18 23:02:32 (11812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-18 23:02:32 (11812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-18 23:02:32 (11812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-18 23:02:32 (11812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-18 23:02:32 (11812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-18 23:02:32 (11812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-18 23:02:32 (11812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-18 23:02:32 (11812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-18 23:02:32 (11812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-18 23:02:32 (11812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-18 23:02:32 (11812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-18 23:02:32 (11812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-18 23:02:32 (11812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-18 23:02:32 (11812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-18 23:02:32 (11812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-18 23:02:32 (11812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-18 23:02:32 (11812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-18 23:02:32 (11812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-18 23:02:32 (11812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-18 23:02:32 (11812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-18 23:02:32 (11812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-18 23:02:32 (11812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-18 23:02:32 (11812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-18 23:02:32 (11812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-18 23:02:32 (11812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-18 23:02:32 (11812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-18 23:02:32 (11812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-18 23:02:32 (11812): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-18 23:02:32 (11812): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-18 23:02:36 (11812): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-18 23:02:36 (11812): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-18 23:02:42 (11812): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-18 23:02:42 (11812): Guest Log: 00:00:00.000176 main     Log opened 2024-06-18T23:02:40.699112000Z
2024-06-18 23:02:42 (11812): Guest Log: 00:00:00.000291 main     OS Product: Linux
2024-06-18 23:02:42 (11812): Guest Log: 00:00:00.000330 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-18 23:02:42 (11812): Guest Log: 00:00:00.000361 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-18 23:02:42 (11812): Guest Log: 00:00:00.000388 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-18 23:02:42 (11812): Guest Log: 00:00:00.000389 main     Process ID: 1303
2024-06-18 23:02:42 (11812): Guest Log: 00:00:00.000390 main     Package type: LINUX_64BITS_GENERIC
2024-06-18 23:02:42 (11812): Guest Log: 00:00:00.001285 main     5.2.32 r132073 started. Verbose level = 0
2024-06-18 23:02:42 (11812): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-18 23:02:42 (11812): Guest Log: [INFO] Mounting shared directory
2024-06-18 23:02:42 (11812): Guest Log: [INFO] Checking for init_data.xml
2024-06-18 23:02:52 (11812): Guest Log: 00:00:10.003796 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 788 442 939 000ns (GuestNow=1 718 740 972 259 367 000 ns GuestLast=1 718 751 760 702 306 000 ns fSetTimeLastLoop=true )
2024-06-18 23:04:59 (11812): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-18 23:04:59 (11812): Guest Log: [INFO] Detected branch: prod
2024-06-18 23:04:59 (11812): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-18 23:04:59 (11812): Guest Log: Copying input files
2024-06-18 23:05:03 (11812): Guest Log: Copied input files into RunAtlas.
2024-06-18 23:05:03 (11812): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-06-18 23:05:03 (11812): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-06-18 23:05:03 (11812): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-06-18 23:05:03 (11812): Guest Log: Further information can be found at the LHC@home message board.
2024-06-18 23:07:03 (11812): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-18 23:07:03 (11812): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-18 23:07:03 (11812): Guest Log: 2.6.3.0 1617 2 32180 134025 4 1 3117205 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-06-18 23:07:04 (11812): Guest Log: copied the webapp to /var/www
2024-06-18 23:07:04 (11812): Guest Log: ATHENA_PROC_NUMBER=4
2024-06-18 23:07:04 (11812): Guest Log: ATHENA_CORE_NUMBER=4
2024-06-18 23:07:04 (11812): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-18 23:07:04 (11812): Guest Log:  *** Starting ATLAS job. (PandaID=6231689681 taskID=38921013) ***
2024-06-19 00:42:31 (11812): Status Report: Elapsed Time: '6000.000000'
2024-06-19 00:42:31 (11812): Status Report: CPU Time: '15547.609375'
2024-06-19 02:22:35 (11812): Status Report: Elapsed Time: '12000.000000'
2024-06-19 02:22:35 (11812): Status Report: CPU Time: '39397.156250'
2024-06-19 04:02:42 (11812): Status Report: Elapsed Time: '18000.000000'
2024-06-19 04:02:42 (11812): Status Report: CPU Time: '63226.890625'
2024-06-19 05:42:45 (11812): Status Report: Elapsed Time: '24000.000000'
2024-06-19 05:42:45 (11812): Status Report: CPU Time: '85193.578125'
2024-06-19 07:22:48 (11812): Status Report: Elapsed Time: '30000.000000'
2024-06-19 07:22:48 (11812): Status Report: CPU Time: '105002.421875'
2024-06-19 09:02:52 (11812): Status Report: Elapsed Time: '36000.000000'
2024-06-19 09:02:52 (11812): Status Report: CPU Time: '124603.843750'
2024-06-19 10:42:55 (11812): Status Report: Elapsed Time: '42000.000000'
2024-06-19 10:42:55 (11812): Status Report: CPU Time: '143900.281250'
2024-06-19 12:22:59 (11812): Status Report: Elapsed Time: '48000.000000'
2024-06-19 12:22:59 (11812): Status Report: CPU Time: '162991.203125'
2024-06-19 14:03:02 (11812): Status Report: Elapsed Time: '54000.000000'
2024-06-19 14:03:02 (11812): Status Report: CPU Time: '182392.843750'
2024-06-19 15:00:46 (11812): Guest Log:  *** Job finished ***
2024-06-19 15:00:46 (11812): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-19 15:00:46 (11812): Guest Log: 2024-06-19 12:00:36,798 | INFO     | [data] copytool_out thread has finished
2024-06-19 15:00:46 (11812): Guest Log: 2024-06-19 12:00:36,798 | INFO     | [job] queue monitor thread has finished
2024-06-19 15:00:46 (11812): Guest Log: 2024-06-19 12:00:39,025 | INFO     | [data] queue_monitor thread has finished
2024-06-19 15:00:46 (11812): Guest Log: 2024-06-19 12:00:40,647 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139844115949376)>', '<ExcThread(monitor, started 139842910410496)>']
2024-06-19 15:00:46 (11812): Guest Log: 2024-06-19 12:00:41,648 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-19 15:00:46 (11812): Guest Log: 2024-06-19 12:00:41,648 | INFO     | [monitor] control thread has ended
2024-06-19 15:00:46 (11812): Guest Log: 2024-06-19 12:00:45,651 | INFO     | all workflow threads have been joined
2024-06-19 15:00:46 (11812): Guest Log: 2024-06-19 12:00:45,651 | INFO     | end of generic workflow (traces error code: 0)
2024-06-19 15:00:46 (11812): Guest Log: 2024-06-19 12:00:45,652 | INFO     | traces error code: 0
2024-06-19 15:00:46 (11812): Guest Log: 2024-06-19 12:00:45,652 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-19 15:00:46 (11812): Guest Log: 2024-06-19 12:00:45,759 [wrapper] ==== pilot stdout END ====
2024-06-19 15:00:46 (11812): Guest Log: 2024-06-19 12:00:45,765 [wrapper] ==== wrapper stdout RESUME ====
2024-06-19 15:00:46 (11812): Guest Log: 2024-06-19 12:00:45,771 [wrapper] pilotpid: 6531
2024-06-19 15:00:46 (11812): Guest Log: 2024-06-19 12:00:45,779 [wrapper] Pilot exit status: 0
2024-06-19 15:00:46 (11812): Guest Log: 2024-06-19 12:00:45,892 [wrapper] pandaids: 6231689681
2024-06-19 15:00:46 (11812): Guest Log: 2024-06-19 12:00:45,932 [wrapper] cleanup supervisor_pilot 16995 6532
2024-06-19 15:00:46 (11812): Guest Log: 2024-06-19 12:00:45,938 [wrapper] Test setup, not cleaning
2024-06-19 15:00:46 (11812): Guest Log: 2024-06-19 12:00:45,943 [wrapper] ==== wrapper stdout END ====
2024-06-19 15:00:46 (11812): Guest Log: 2024-06-19 12:00:45,949 [wrapper] ==== wrapper stderr END ====
2024-06-19 15:00:46 (11812): Guest Log: 2024-06-19 12:00:45,961 [wrapper] apfmon messages muted
2024-06-19 15:00:46 (11812): Guest Log:  *** Error codes and diagnostics ***
2024-06-19 15:00:46 (11812): Guest Log:     "exeErrorCode": 0,
2024-06-19 15:00:46 (11812): Guest Log:     "exeErrorDiag": "",
2024-06-19 15:00:46 (11812): Guest Log:     "pilotErrorCode": 0,
2024-06-19 15:00:46 (11812): Guest Log:     "pilotErrorDiag": "",
2024-06-19 15:00:46 (11812): Guest Log:  *** Listing of results directory ***
2024-06-19 15:00:46 (11812): Guest Log: total 350784
2024-06-19 15:00:46 (11812): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 15 22:00 pilot3.tar.gz
2024-06-19 15:00:46 (11812): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 15 22:07 queuedata.json
2024-06-19 15:00:46 (11812): Guest Log: -rwx------. 1 atlas atlas     32308 Jun 15 22:09 runpilot2-wrapper.sh
2024-06-19 15:00:46 (11812): Guest Log: -rwxr-xr-x. 1 atlas atlas      8879 Jun 18 20:05 init_data.xml
2024-06-19 15:00:46 (11812): Guest Log: -rwxr-xr-x. 1 atlas atlas    482529 Jun 18 20:05 input.tar.gz
2024-06-19 15:00:46 (11812): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Jun 18 20:05 start_atlas.sh
2024-06-19 15:00:46 (11812): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 18 20:05 EVNT.38776210._001030.pool.root.1 -> /data/./ATLAS.root_0
2024-06-19 15:00:46 (11812): Guest Log: -rw-r--r--. 1 atlas atlas      2647 Jun 18 20:07 pandaJob.out
2024-06-19 15:00:46 (11812): Guest Log: -rw-------. 1 atlas atlas       424 Jun 18 20:07 setup.sh.local
2024-06-19 15:00:46 (11812): Guest Log: -rw-------. 1 atlas atlas   1023184 Jun 18 20:08 agis_schedconf.cvmfs.json
2024-06-19 15:00:46 (11812): Guest Log: -rw-------. 1 atlas atlas   1317943 Jun 18 20:08 cric_ddmendpoints.json
2024-06-19 15:00:46 (11812): Guest Log: drwx------. 4 atlas atlas      4096 Jun 18 20:08 pilot3
2024-06-19 15:00:46 (11812): Guest Log: -rw-------. 1 atlas atlas 341422574 Jun 19 11:59 HITS.38921013._038652.pool.root.1
2024-06-19 15:00:46 (11812): Guest Log: -rw-------. 1 atlas atlas      1030 Jun 19 12:00 memory_monitor_summary.json
2024-06-19 15:00:46 (11812): Guest Log: -rw-------. 1 atlas atlas         0 Jun 19 12:00 agis_ddmendpoints.agis.ALL.json
2024-06-19 15:00:46 (11812): Guest Log: -rw-------. 1 atlas atlas    743536 Jun 19 12:00 log.38921013._038652.job.log.tgz.1
2024-06-19 15:00:46 (11812): Guest Log: -rw-------. 1 atlas atlas      7746 Jun 19 12:00 heartbeat.json
2024-06-19 15:00:46 (11812): Guest Log: -rw-------. 1 atlas atlas        95 Jun 19 12:00 pilot_heartbeat.json
2024-06-19 15:00:46 (11812): Guest Log: -rw-------. 1 atlas atlas      4394 Jun 19 12:00 pilotlog.txt
2024-06-19 15:00:46 (11812): Guest Log: -rw-------. 1 atlas atlas   6411921 Jun 19 12:00 log.38921013._038652.job.log.1
2024-06-19 15:00:46 (11812): Guest Log: -rw-------. 1 atlas atlas       357 Jun 19 12:00 output.list
2024-06-19 15:00:46 (11812): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 19 12:00 runtime_log
2024-06-19 15:00:46 (11812): Guest Log: -rw-------. 1 atlas atlas   7178240 Jun 19 12:00 result.tar.gz
2024-06-19 15:00:46 (11812): Guest Log: -rw-------. 1 atlas atlas       663 Jun 19 12:00 ZJHODmolqc5n9Rq4apOajLDm4fhM0noT9bVo2ijZDmkmUKDmI9LBlm.diag
2024-06-19 15:00:46 (11812): Guest Log: -rw-r--r--. 1 atlas atlas     10967 Jun 19 12:00 runtime_log.err
2024-06-19 15:00:46 (11812): Guest Log: Looking for outputfile HITS.38921013._038652.pool.root.1
2024-06-19 15:00:46 (11812): Guest Log: HITS file was successfully produced
2024-06-19 15:00:46 (11812): Guest Log: -rw-------. 1 atlas atlas 341422574 Jun 19 11:59 /home/atlas/RunAtlas/HITS.38921013._038652.pool.root.1
2024-06-19 15:00:49 (11812): Guest Log: Successfully finished the ATLAS job!
2024-06-19 15:00:49 (11812): Guest Log: Copying the results back to the shared directory!
2024-06-19 15:00:49 (11812): Guest Log:  *** Contents of shared directory: ***
2024-06-19 15:00:49 (11812): Guest Log: total 868464
2024-06-19 15:00:49 (11812): Guest Log: -rwxrwxrwx. 1 root root 540182436 Jun 18 20:02 ATLAS.root_0
2024-06-19 15:00:49 (11812): Guest Log: -rwxrwxrwx. 1 root root 341422574 Jun 19 12:00 HITS.pool.root.1
2024-06-19 15:00:49 (11812): Guest Log: -rwxrwxrwx. 1 root root      8879 Jun 18 20:02 init_data.xml
2024-06-19 15:00:49 (11812): Guest Log: -rwxrwxrwx. 1 root root    482529 Jun 16 03:47 input.tar.gz
2024-06-19 15:00:49 (11812): Guest Log: -rwxrwxrwx. 1 root root   7178240 Jun 19 12:00 result.tar.gz
2024-06-19 15:00:49 (11812): Guest Log: -rwxrwxrwx. 1 root root     17537 Jun 16 03:47 start_atlas.sh
2024-06-19 15:00:49 (11812): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-19 15:00:49 (11812): VM Completion File Detected.
2024-06-19 15:00:49 (11812): Powering off VM.
2024-06-19 15:00:50 (11812): Successfully stopped VM.
2024-06-19 15:00:50 (11812): Deregistering VM. (boinc_7dcba9f7ef70f8da, slot#3)
2024-06-19 15:00:50 (11812): Removing network bandwidth throttle group from VM.
2024-06-19 15:00:50 (11812): Removing VM from VirtualBox.
15:00:55 (11812): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN