Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-15 23:34:39 (9200): Detected: vboxwrapper 26206
2024-06-15 23:34:39 (9200): Detected: BOINC client v7.24.1
2024-06-15 23:34:42 (9200): Detected: VirtualBox VboxManage Interface (Version: 6.1.22)
2024-06-15 23:34:42 (9200): Successfully copied 'init_data.xml' to the shared directory.
2024-06-15 23:34:43 (9200): Create VM. (boinc_bd399a5f8f5c90c2, slot#6)
2024-06-15 23:34:45 (9200): Setting Memory Size for VM. (4200MB)
2024-06-15 23:34:45 (9200): Setting CPU Count for VM. (2)
2024-06-15 23:34:46 (9200): Setting Chipset Options for VM.
2024-06-15 23:34:47 (9200): Setting Graphics Controller Options for VM.
2024-06-15 23:34:47 (9200): Setting Boot Options for VM.
2024-06-15 23:34:48 (9200): Setting Network Configuration for NAT.
2024-06-15 23:34:48 (9200): Enabling VM Network Access.
2024-06-15 23:34:49 (9200): Disabling USB Support for VM.
2024-06-15 23:34:50 (9200): Disabling COM Port Support for VM.
2024-06-15 23:34:50 (9200): Disabling LPT Port Support for VM.
2024-06-15 23:34:51 (9200): Disabling Audio Support for VM.
2024-06-15 23:34:51 (9200): Disabling Clipboard Support for VM.
2024-06-15 23:34:52 (9200): Disabling Drag and Drop Support for VM.
2024-06-15 23:34:52 (9200): Adding storage controller(s) to VM.
2024-06-15 23:34:53 (9200): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-15 23:34:55 (9200): Adding VirtualBox Guest Additions to VM.
2024-06-15 23:34:56 (9200): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-15 23:34:57 (9200): forwarding host port 62865 to guest port 80
2024-06-15 23:34:57 (9200): Enabling remote desktop for VM.
2024-06-15 23:34:58 (9200): Required extension pack not installed, remote desktop not enabled.
2024-06-15 23:34:58 (9200): Enabling shared directory for VM.
2024-06-15 23:34:59 (9200): Starting VM using VBoxManage interface. (boinc_bd399a5f8f5c90c2, slot#6)
2024-06-15 23:35:13 (9200): Successfully started VM. (PID = '14308')
2024-06-15 23:35:13 (9200): Reporting VM Process ID to BOINC.
2024-06-15 23:35:13 (9200): Guest Log: BIOS: VirtualBox 6.1.22
2024-06-15 23:35:13 (9200): Guest Log: CPUID EDX: 0x178bfbff
2024-06-15 23:35:13 (9200): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-15 23:35:13 (9200): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-15 23:35:13 (9200): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-15 23:35:13 (9200): Detected: Web Application Enabled (http://localhost:62865)
2024-06-15 23:35:13 (9200): Preference change detected
2024-06-15 23:35:13 (9200): Setting CPU throttle for VM. (100%)
2024-06-15 23:35:14 (9200): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-15 23:35:20 (9200): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-15 23:35:20 (9200): Guest Log: BIOS: Booting from Hard Disk...
2024-06-15 23:35:52 (9200): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-15 23:35:52 (9200): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-15 23:35:52 (9200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-15 23:35:52 (9200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-15 23:35:52 (9200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-15 23:35:52 (9200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-15 23:35:52 (9200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-15 23:35:52 (9200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-15 23:35:57 (9200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-15 23:35:57 (9200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-15 23:35:57 (9200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-15 23:35:57 (9200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-15 23:35:57 (9200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-15 23:35:57 (9200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-15 23:35:57 (9200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-15 23:35:57 (9200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-15 23:35:59 (9200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-15 23:35:59 (9200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-15 23:35:59 (9200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-15 23:35:59 (9200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-15 23:35:59 (9200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-15 23:35:59 (9200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-15 23:35:59 (9200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-15 23:35:59 (9200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-15 23:35:59 (9200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-15 23:35:59 (9200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-15 23:35:59 (9200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-15 23:35:59 (9200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-15 23:35:59 (9200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-15 23:35:59 (9200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-15 23:35:59 (9200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-15 23:35:59 (9200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-15 23:36:11 (9200): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-15 23:36:11 (9200): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-15 23:36:50 (9200): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-15 23:36:50 (9200): Guest Log: 00:00:00.004865 main     Log opened 2024-06-15T23:36:48.787040000Z
2024-06-15 23:36:51 (9200): Guest Log: 00:00:00.005822 main     OS Product: Linux
2024-06-15 23:36:51 (9200): Guest Log: 00:00:00.006011 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-15 23:36:51 (9200): Guest Log: 00:00:00.006127 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-15 23:36:51 (9200): Guest Log: 00:00:00.006294 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-15 23:36:51 (9200): Guest Log: 00:00:00.006296 main     Process ID: 1246
2024-06-15 23:36:51 (9200): Guest Log: 00:00:00.006297 main     Package type: LINUX_64BITS_GENERIC
2024-06-15 23:36:51 (9200): Guest Log: 00:00:00.008908 main     5.2.32 r132073 started. Verbose level = 0
2024-06-15 23:36:51 (9200): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-15 23:36:53 (9200): Guest Log: [INFO] Mounting shared directory
2024-06-15 23:36:53 (9200): Guest Log: [INFO] Checking for init_data.xml
2024-06-15 23:37:04 (9200): Guest Log: 00:00:10.048201 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 778 164 000ns (GuestNow=1 718 487 420 044 374 000 ns GuestLast=1 718 494 608 822 538 000 ns fSetTimeLastLoop=true )
2024-06-15 23:37:45 (9200): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-15 23:37:45 (9200): Guest Log: [INFO] Detected branch: prod
2024-06-15 23:37:49 (9200): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-15 23:37:54 (9200): Guest Log: Copying input files
2024-06-15 23:38:04 (9200): Guest Log: Copied input files into RunAtlas.
2024-06-15 23:38:04 (9200): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-06-15 23:38:04 (9200): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-06-15 23:38:04 (9200): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-06-15 23:38:04 (9200): Guest Log: Further information can be found at the LHC@home message board.
2024-06-15 23:39:07 (9200): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-15 23:39:11 (9200): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-15 23:39:11 (9200): Guest Log: 2.6.3.0 1538 1 32112 133917 3 1 3117205 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-06-15 23:39:18 (9200): Guest Log: copied the webapp to /var/www
2024-06-15 23:39:18 (9200): Guest Log: ATHENA_PROC_NUMBER=2
2024-06-15 23:39:18 (9200): Guest Log: ATHENA_CORE_NUMBER=2
2024-06-15 23:39:24 (9200): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-15 23:39:24 (9200): Guest Log:  *** Starting ATLAS job. (PandaID=6231528741 taskID=38921007) ***
2024-06-16 00:03:03 (9200): Guest Log:  *** Job finished ***
2024-06-16 00:03:03 (9200): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-16 00:03:03 (9200): Guest Log: 2024-06-15 22:02:51,523 | INFO     | [payload] validate_post thread has finished
2024-06-16 00:03:03 (9200): Guest Log: 2024-06-15 22:02:51,626 | INFO     | [data] copytool_out thread has finished
2024-06-16 00:03:03 (9200): Guest Log: 2024-06-15 22:02:53,111 | INFO     | [data] queue_monitor thread has finished
2024-06-16 00:03:03 (9200): Guest Log: 2024-06-15 22:02:53,376 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140412416603968)>', '<ExcThread(monitor, started 140411976791808)>']
2024-06-16 00:03:03 (9200): Guest Log: 2024-06-15 22:02:53,955 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-16 00:03:03 (9200): Guest Log: 2024-06-15 22:02:53,956 | INFO     | [monitor] control thread has ended
2024-06-16 00:03:03 (9200): Guest Log: 2024-06-15 22:02:58,395 | INFO     | all workflow threads have been joined
2024-06-16 00:03:03 (9200): Guest Log: 2024-06-15 22:02:58,395 | INFO     | end of generic workflow (traces error code: 0)
2024-06-16 00:03:03 (9200): Guest Log: 2024-06-15 22:02:58,397 | INFO     | traces error code: 0
2024-06-16 00:03:03 (9200): Guest Log: 2024-06-15 22:02:58,399 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-16 00:03:03 (9200): Guest Log: 2024-06-15 22:02:58,938 [wrapper] ==== pilot stdout END ====
2024-06-16 00:03:03 (9200): Guest Log: 2024-06-15 22:02:58,983 [wrapper] ==== wrapper stdout RESUME ====
2024-06-16 00:03:03 (9200): Guest Log: 2024-06-15 22:02:59,027 [wrapper] pilotpid: 6458
2024-06-16 00:03:03 (9200): Guest Log: 2024-06-15 22:02:59,071 [wrapper] Pilot exit status: 0
2024-06-16 00:03:03 (9200): Guest Log: 2024-06-15 22:02:59,596 [wrapper] pandaids: 6231528741
2024-06-16 00:03:04 (9200): Guest Log: 2024-06-15 22:02:59,809 [wrapper] cleanup supervisor_pilot 30027 6459
2024-06-16 00:03:04 (9200): Guest Log: 2024-06-15 22:02:59,861 [wrapper] Test setup, not cleaning
2024-06-16 00:03:04 (9200): Guest Log: 2024-06-15 22:02:59,905 [wrapper] ==== wrapper stdout END ====
2024-06-16 00:03:04 (9200): Guest Log: 2024-06-15 22:02:59,949 [wrapper] ==== wrapper stderr END ====
2024-06-16 00:03:04 (9200): Guest Log: 2024-06-15 22:03:00,048 [wrapper] apfmon messages muted
2024-06-16 00:03:04 (9200): Guest Log:  *** Error codes and diagnostics ***
2024-06-16 00:03:04 (9200): Guest Log:     "exeErrorCode": 65,
2024-06-16 00:03:04 (9200): Guest Log:     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132)",
2024-06-16 00:03:04 (9200): Guest Log:     "pilotErrorCode": 1305,
2024-06-16 00:03:04 (9200): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute 2024-06-15 21:58:38,891 CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132)",
2024-06-16 00:03:05 (9200): Guest Log:  *** Listing of results directory ***
2024-06-16 00:03:05 (9200): Guest Log: total 3900
2024-06-16 00:03:05 (9200): Guest Log: -rw-r--r--. 1 atlas atlas  469766 Jun 15 16:11 pilot3.tar.gz
2024-06-16 00:03:05 (9200): Guest Log: -rw-r--r--. 1 atlas atlas    5654 Jun 15 16:26 queuedata.json
2024-06-16 00:03:05 (9200): Guest Log: -rwx------. 1 atlas atlas   32308 Jun 15 16:27 runpilot2-wrapper.sh
2024-06-16 00:03:05 (9200): Guest Log: -rwxr-xr-x. 1 atlas atlas    9099 Jun 15 21:37 init_data.xml
2024-06-16 00:03:05 (9200): Guest Log: -rwxr-xr-x. 1 atlas atlas  482535 Jun 15 21:37 input.tar.gz
2024-06-16 00:03:05 (9200): Guest Log: -rwxr-xr-x. 1 atlas atlas   17537 Jun 15 21:37 start_atlas.sh
2024-06-16 00:03:05 (9200): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Jun 15 21:38 EVNT.38776201._000373.pool.root.1 -> /data/./ATLAS.root_0
2024-06-16 00:03:05 (9200): Guest Log: -rw-r--r--. 1 atlas atlas    2630 Jun 15 21:39 pandaJob.out
2024-06-16 00:03:05 (9200): Guest Log: -rw-------. 1 atlas atlas     424 Jun 15 21:39 setup.sh.local
2024-06-16 00:03:05 (9200): Guest Log: -rw-------. 1 atlas atlas 1020856 Jun 15 21:44 agis_schedconf.cvmfs.json
2024-06-16 00:03:05 (9200): Guest Log: -rw-------. 1 atlas atlas       0 Jun 15 21:44 agis_ddmendpoints.agis.ALL.json
2024-06-16 00:03:05 (9200): Guest Log: -rw-------. 1 atlas atlas 1316805 Jun 15 21:44 cric_ddmendpoints.json
2024-06-16 00:03:05 (9200): Guest Log: drwx------. 4 atlas atlas    4096 Jun 15 21:44 pilot3
2024-06-16 00:03:05 (9200): Guest Log: -rw-------. 1 atlas atlas   53270 Jun 15 21:59 log.38921007._042882.job.log.tgz.1
2024-06-16 00:03:05 (9200): Guest Log: -rw-------. 1 atlas atlas      95 Jun 15 22:02 pilot_heartbeat.json
2024-06-16 00:03:05 (9200): Guest Log: -rw-------. 1 atlas atlas    8188 Jun 15 22:02 heartbeat.json
2024-06-16 00:03:05 (9200): Guest Log: -rw-------. 1 atlas atlas    4394 Jun 15 22:02 pilotlog.txt
2024-06-16 00:03:05 (9200): Guest Log: -rw-------. 1 atlas atlas  217763 Jun 15 22:03 log.38921007._042882.job.log.1
2024-06-16 00:03:05 (9200): Guest Log: -rw-------. 1 atlas atlas     188 Jun 15 22:03 output.list
2024-06-16 00:03:05 (9200): Guest Log: -rw-r--r--. 1 atlas atlas     620 Jun 15 22:03 runtime_log
2024-06-16 00:03:05 (9200): Guest Log: -rw-------. 1 atlas atlas  286720 Jun 15 22:03 result.tar.gz
2024-06-16 00:03:05 (9200): Guest Log: -rw-r--r--. 1 atlas atlas   10763 Jun 15 22:03 runtime_log.err
2024-06-16 00:03:05 (9200): Guest Log: -rw-------. 1 atlas atlas     633 Jun 15 22:03 LYmNDmqQlc5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmHEgKDmbARCym.diag
2024-06-16 00:03:05 (9200): Guest Log: Looking for outputfile HITS.38921007._042882.pool.root.1
2024-06-16 00:03:05 (9200): Guest Log: No HITS file was produced
2024-06-16 00:03:05 (9200): Guest Log: Successfully finished the ATLAS job!
2024-06-16 00:03:05 (9200): Guest Log: Copying the results back to the shared directory!
2024-06-16 00:03:05 (9200): Guest Log:  *** Contents of shared directory: ***
2024-06-16 00:03:05 (9200): Guest Log: total 572292
2024-06-16 00:03:05 (9200): Guest Log: -rwxrwxrwx. 1 root root 585220401 Jun 15 21:34 ATLAS.root_0
2024-06-16 00:03:05 (9200): Guest Log: -rwxrwxrwx. 1 root root      9099 Jun 15 21:34 init_data.xml
2024-06-16 00:03:05 (9200): Guest Log: -rwxrwxrwx. 1 root root    482535 Jun 15 21:32 input.tar.gz
2024-06-16 00:03:05 (9200): Guest Log: -rwxrwxrwx. 1 root root    286720 Jun 15 22:03 result.tar.gz
2024-06-16 00:03:05 (9200): Guest Log: -rwxrwxrwx. 1 root root     17537 Jun 15 21:32 start_atlas.sh
2024-06-16 00:03:05 (9200): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-16 00:03:05 (9200): VM Completion File Detected.
2024-06-16 00:03:05 (9200): Powering off VM.
2024-06-16 00:03:09 (9200): Successfully stopped VM.
2024-06-16 00:03:09 (9200): Deregistering VM. (boinc_bd399a5f8f5c90c2, slot#6)
2024-06-16 00:03:10 (9200): Removing network bandwidth throttle group from VM.
2024-06-16 00:03:10 (9200): Removing VM from VirtualBox.
00:03:16 (9200): called boinc_finish(0)

</stderr_txt>
]]>

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