Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
01:59:43 (497256): wrapper (7.7.26015): starting
01:59:43 (497256): wrapper: running run_atlas (--nthreads 6)
[2024-06-17 01:59:43] Arguments: --nthreads 6
[2024-06-17 01:59:43] Threads: 6
[2024-06-17 01:59:43] Checking for CVMFS
[2024-06-17 01:59:43] Probing /cvmfs/atlas.cern.ch... OK
[2024-06-17 01:59:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-06-17 01:59:43] Running cvmfs_config stat atlas.cern.ch
[2024-06-17 01:59:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-06-17 01:59:43] 2.11.2.0 2816 22363 67348 133955 0 56 3817055 6144001 915 130560 0 38193258 99.995 3208513 3082 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.42:3128 1
[2024-06-17 01:59:43] CVMFS is ok
[2024-06-17 01:59:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-17 01:59:43] Checking for apptainer binary...
[2024-06-17 01:59:43] Using apptainer found in PATH at /usr/bin/apptainer
[2024-06-17 01:59:43] Running /usr/bin/apptainer --version
[2024-06-17 01:59:43] apptainer version 1.3.0
[2024-06-17 01:59:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-17 01:59:43] Ryzen8
[2024-06-17 01:59:43] apptainer works
[2024-06-17 01:59:43] Set ATHENA_PROC_NUMBER=6
[2024-06-17 01:59:43] Set ATHENA_CORE_NUMBER=6
[2024-06-17 01:59:43] Starting ATLAS job with PandaID=6231234686
[2024-06-17 01:59:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-17 05:14:50]  *** The last 200 lines of the pilot log: ***
[2024-06-17 05:14:50] 2024-06-17 03:14:21,357 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-06-17 05:14:50] 2024-06-17 03:14:30,805 | INFO     | CPU arch script returned: x86-64-v4
[2024-06-17 05:14:50] 2024-06-17 03:14:30,805 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6231234686/memory_monitor_summary.json (trf name=prmon)
[2024-06-17 05:14:50] 2024-06-17 03:14:30,809 | INFO     | extracted standard info from prmon json
[2024-06-17 05:14:50] 2024-06-17 03:14:30,809 | INFO     | extracted standard memory fields from prmon json
[2024-06-17 05:14:50] 2024-06-17 03:14:30,809 | WARNING  | GPU info not found in prmon json
[2024-06-17 05:14:50] 2024-06-17 03:14:30,809 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-06-17 05:14:50] 2024-06-17 03:14:30,810 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-06-17 05:14:50] 2024-06-17 03:14:30,812 | INFO     | fitting pss+swap vs Time
[2024-06-17 05:14:50] 2024-06-17 03:14:30,812 | INFO     | model: linear, x: [1718582405.0, 1718582466.0, 1718582527.0, 1718582588.0, 1718582649.0, 1718582710.0, 1718582771.0, 1718582832.0, 1718582893.0, 1718582954.0, 1718
[2024-06-17 05:14:50] 2024-06-17 03:14:30,812 | INFO     | sum of square deviations: 2160561440.0
[2024-06-17 05:14:50] 2024-06-17 03:14:30,813 | INFO     | sum of deviations: 27189363531.000004
[2024-06-17 05:14:50] 2024-06-17 03:14:30,813 | INFO     | mean x: 1718588200.0
[2024-06-17 05:14:50] 2024-06-17 03:14:30,813 | INFO     | mean y: 2505576.1832460733
[2024-06-17 05:14:50] 2024-06-17 03:14:30,813 | INFO     | -- intersect: -21624891110.988464
[2024-06-17 05:14:50] 2024-06-17 03:14:30,813 | INFO     | intersect: -21624891110.988464
[2024-06-17 05:14:50] 2024-06-17 03:14:30,813 | INFO     | chi2: 1.8771478444933138
[2024-06-17 05:14:50] 2024-06-17 03:14:30,813 | INFO     | model: linear, x: [1718582405.0, 1718582466.0, 1718582527.0, 1718582588.0, 1718582649.0, 1718582710.0, 1718582771.0, 1718582832.0, 1718582893.0, 1718582954.0, 1718
[2024-06-17 05:14:50] 2024-06-17 03:14:30,813 | INFO     | sum of square deviations: 1995283922.5
[2024-06-17 05:14:50] 2024-06-17 03:14:30,814 | INFO     | sum of deviations: 26325192452.0
[2024-06-17 05:14:50] 2024-06-17 03:14:30,814 | INFO     | mean x: 1718588047.5
[2024-06-17 05:14:50] 2024-06-17 03:14:30,814 | INFO     | mean y: 2504776.88172043
[2024-06-17 05:14:50] 2024-06-17 03:14:30,814 | INFO     | -- intersect: -22672043234.03897
[2024-06-17 05:14:50] 2024-06-17 03:14:30,814 | INFO     | intersect: -22672043234.03897
[2024-06-17 05:14:50] 2024-06-17 03:14:30,814 | INFO     | chi2: 1.8788521107642233
[2024-06-17 05:14:50] 2024-06-17 03:14:30,814 | INFO     | current chi2=1.8788521107642233 (change=-0.09079019939260526 %)
[2024-06-17 05:14:50] 2024-06-17 03:14:30,814 | INFO     | right removable region: 185
[2024-06-17 05:14:50] 2024-06-17 03:14:30,814 | INFO     | model: linear, x: [1718582710.0, 1718582771.0, 1718582832.0, 1718582893.0, 1718582954.0, 1718583015.0, 1718583076.0, 1718583137.0, 1718583198.0, 1718583259.0, 1718
[2024-06-17 05:14:50] 2024-06-17 03:14:30,814 | INFO     | sum of square deviations: 1995283922.5
[2024-06-17 05:14:50] 2024-06-17 03:14:30,814 | INFO     | sum of deviations: -8901577469.5
[2024-06-17 05:14:50] 2024-06-17 03:14:30,815 | INFO     | mean x: 1718588352.5
[2024-06-17 05:14:50] 2024-06-17 03:14:30,815 | INFO     | mean y: 2538612.38172043
[2024-06-17 05:14:50] 2024-06-17 03:14:30,815 | INFO     | -- intersect: 7669691735.527845
[2024-06-17 05:14:50] 2024-06-17 03:14:30,815 | INFO     | intersect: 7669691735.527845
[2024-06-17 05:14:50] 2024-06-17 03:14:30,815 | INFO     | chi2: 0.14047763334397434
[2024-06-17 05:14:50] 2024-06-17 03:14:30,815 | INFO     | current chi2=0.14047763334397434 (change=92.51643210969924 %)
[2024-06-17 05:14:50] 2024-06-17 03:14:30,815 | INFO     | model: linear, x: [1718583015.0, 1718583076.0, 1718583137.0, 1718583198.0, 1718583259.0, 1718583320.0, 1718583381.0, 1718583442.0, 1718583503.0, 1718583564.0, 1718
[2024-06-17 05:14:50] 2024-06-17 03:14:30,815 | INFO     | sum of square deviations: 1838657730.0
[2024-06-17 05:14:50] 2024-06-17 03:14:30,815 | INFO     | sum of deviations: -4046002266.0000014
[2024-06-17 05:14:50] 2024-06-17 03:14:30,815 | INFO     | mean x: 1718588505.0
[2024-06-17 05:14:50] 2024-06-17 03:14:30,815 | INFO     | mean y: 2533838.408839779
[2024-06-17 05:14:50] 2024-06-17 03:14:30,816 | INFO     | -- intersect: 3784321428.397954
[2024-06-17 05:14:50] 2024-06-17 03:14:30,816 | INFO     | intersect: 3784321428.397954
[2024-06-17 05:14:50] 2024-06-17 03:14:30,816 | INFO     | chi2: 0.11233579458569154
[2024-06-17 05:14:50] 2024-06-17 03:14:30,816 | INFO     | current chi2=0.11233579458569154 (change=20.0329675894913 %)
[2024-06-17 05:14:50] 2024-06-17 03:14:30,816 | INFO     | left removable region: 20
[2024-06-17 05:14:50] 2024-06-17 03:14:30,816 | INFO     | model: linear, x: [1718583625.0, 1718583686.0, 1718583747.0, 1718583808.0, 1718583869.0, 1718583930.0, 1718583991.0, 1718584052.0, 1718584113.0, 1718584174.0, 1718
[2024-06-17 05:14:50] 2024-06-17 03:14:30,816 | INFO     | sum of square deviations: 1392881930.0
[2024-06-17 05:14:50] 2024-06-17 03:14:30,816 | INFO     | sum of deviations: 5126373937.0
[2024-06-17 05:14:50] 2024-06-17 03:14:30,816 | INFO     | mean x: 1718588627.0
[2024-06-17 05:14:50] 2024-06-17 03:14:30,816 | INFO     | mean y: 2523608.0303030303
[2024-06-17 05:14:50] 2024-06-17 03:14:30,816 | INFO     | -- intersect: -6322583894.71217
[2024-06-17 05:14:50] 2024-06-17 03:14:30,816 | INFO     | intersect: -6322583894.71217
[2024-06-17 05:14:50] 2024-06-17 03:14:30,817 | INFO     | chi2: 0.0058368398105400334
[2024-06-17 05:14:50] 2024-06-17 03:14:30,817 | INFO     | -- intersect: -6322583894.71217
[2024-06-17 05:14:50] 2024-06-17 03:14:30,817 | INFO     | current memory leak: 3.68 B/s (using 165 data points, chi2=0.01)
[2024-06-17 05:14:50] 2024-06-17 03:14:30,817 | INFO     | ..............................
[2024-06-17 05:14:50] 2024-06-17 03:14:30,817 | INFO     | . Timing measurements:
[2024-06-17 05:14:50] 2024-06-17 03:14:30,817 | INFO     | . get job = 0 s
[2024-06-17 05:14:50] 2024-06-17 03:14:30,817 | INFO     | . initial setup = 1 s
[2024-06-17 05:14:50] 2024-06-17 03:14:30,817 | INFO     | . payload setup = 2 s
[2024-06-17 05:14:50] 2024-06-17 03:14:30,817 | INFO     | . stage-in = 0 s
[2024-06-17 05:14:50] 2024-06-17 03:14:30,817 | INFO     | . payload execution = 11652 s
[2024-06-17 05:14:50] 2024-06-17 03:14:30,817 | INFO     | . stage-out = 0 s
[2024-06-17 05:14:50] 2024-06-17 03:14:30,817 | INFO     | . log creation = 0 s
[2024-06-17 05:14:50] 2024-06-17 03:14:30,817 | INFO     | ..............................
[2024-06-17 05:14:50] 2024-06-17 03:14:30,865 | WARNING  | process 507923 is no longer using CPU - aborting
[2024-06-17 05:14:50] 2024-06-17 03:14:30,865 | INFO     | aborting job monitoring since job object (job id=6231234686) has expired
[2024-06-17 05:14:50] 2024-06-17 03:14:31,231 | INFO     | 
[2024-06-17 05:14:50] 2024-06-17 03:14:31,231 | INFO     | job summary report
[2024-06-17 05:14:50] 2024-06-17 03:14:31,231 | INFO     | --------------------------------------------------
[2024-06-17 05:14:50] 2024-06-17 03:14:31,231 | INFO     | PanDA job id: 6231234686
[2024-06-17 05:14:50] 2024-06-17 03:14:31,231 | INFO     | task id: 38921007
[2024-06-17 05:14:50] 2024-06-17 03:14:31,231 | INFO     | errors: (none)
[2024-06-17 05:14:50] 2024-06-17 03:14:31,231 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-17 05:14:50] 2024-06-17 03:14:31,231 | INFO     | pilot state: finished 
[2024-06-17 05:14:50] 2024-06-17 03:14:31,231 | INFO     | transexitcode: 0
[2024-06-17 05:14:50] 2024-06-17 03:14:31,231 | INFO     | exeerrorcode: 0
[2024-06-17 05:14:50] 2024-06-17 03:14:31,231 | INFO     | exeerrordiag: 
[2024-06-17 05:14:50] 2024-06-17 03:14:31,231 | INFO     | exitcode: 0
[2024-06-17 05:14:50] 2024-06-17 03:14:31,231 | INFO     | exitmsg: OK
[2024-06-17 05:14:50] 2024-06-17 03:14:31,231 | INFO     | cpuconsumptiontime: 66929 s
[2024-06-17 05:14:50] 2024-06-17 03:14:31,231 | INFO     | nevents: 400
[2024-06-17 05:14:50] 2024-06-17 03:14:31,231 | INFO     | neventsw: 0
[2024-06-17 05:14:50] 2024-06-17 03:14:31,231 | INFO     | pid: 507923
[2024-06-17 05:14:50] 2024-06-17 03:14:31,231 | INFO     | pgrp: 507923
[2024-06-17 05:14:50] 2024-06-17 03:14:31,231 | INFO     | corecount: 6
[2024-06-17 05:14:50] 2024-06-17 03:14:31,231 | INFO     | event service: False
[2024-06-17 05:14:50] 2024-06-17 03:14:31,231 | INFO     | sizes: {0: 2379158, 2: 2379364, 11: 2379392, 11658: 2408937, 11659: 2417897, 11660: 2417953, 11670: 2418251}
[2024-06-17 05:14:50] 2024-06-17 03:14:31,231 | INFO     | --------------------------------------------------
[2024-06-17 05:14:50] 2024-06-17 03:14:31,231 | INFO     | 
[2024-06-17 05:14:50] 2024-06-17 03:14:31,231 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2024-06-17 05:14:50] 2024-06-17 03:14:31,243 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-17 05:14:50] 2024-06-17 03:14:31,244 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-17 05:14:50] 2024-06-17 03:14:31,244 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-17 05:14:50] 2024-06-17 03:14:31,244 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-17 05:14:50] 2024-06-17 03:14:31,244 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-17 05:14:50] 2024-06-17 03:14:31,244 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-17 05:14:50] 2024-06-17 03:14:31,244 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-17 05:14:50] 2024-06-17 03:14:31,244 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-17 05:14:50] 2024-06-17 03:14:31,244 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-17 05:14:50] 2024-06-17 03:14:31,244 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-17 05:14:50] 2024-06-17 03:14:31,244 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-17 05:14:50] 2024-06-17 03:14:31,244 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-17 05:14:50] 2024-06-17 03:14:31,244 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-17 05:14:50] 2024-06-17 03:14:31,244 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-17 05:14:50] 2024-06-17 03:14:31,244 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-17 05:14:50] 2024-06-17 03:14:31,244 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-17 05:14:50] 2024-06-17 03:14:31,244 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-17 05:14:50] 2024-06-17 03:14:31,244 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-17 05:14:50] 2024-06-17 03:14:31,244 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-17 05:14:50] 2024-06-17 03:14:31,244 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-17 05:14:50] 2024-06-17 03:14:31,244 | INFO     | job 6231234686 has completed (purged errors)
[2024-06-17 05:14:50] 2024-06-17 03:14:31,244 | INFO     | overall cleanup function is called
[2024-06-17 05:14:50] 2024-06-17 03:14:32,251 | INFO     | --- collectZombieJob: --- 10, [507923]
[2024-06-17 05:14:50] 2024-06-17 03:14:32,251 | INFO     | zombie collector waiting for pid 507923
[2024-06-17 05:14:50] 2024-06-17 03:14:32,251 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-17 05:14:50] 2024-06-17 03:14:33,256 | INFO     | collected zombie processes
[2024-06-17 05:14:50] 2024-06-17 03:14:33,256 | INFO     | will now attempt to kill all subprocesses of pid=507923
[2024-06-17 05:14:50] 2024-06-17 03:14:33,295 | INFO     | process IDs to be killed: [507923] (in reverse order)
[2024-06-17 05:14:50] 2024-06-17 03:14:33,320 | WARNING  | found no corresponding commands to process id(s)
[2024-06-17 05:14:50] 2024-06-17 03:14:33,321 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-17 05:14:50] 2024-06-17 03:14:33,322 | INFO     | did not find any defunct processes belonging to 507923
[2024-06-17 05:14:50] 2024-06-17 03:14:33,324 | INFO     | did not find any defunct processes belonging to 507923
[2024-06-17 05:14:50] 2024-06-17 03:14:33,324 | INFO     | ready for new job
[2024-06-17 05:14:50] 2024-06-17 03:14:33,324 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-17 05:14:50] 2024-06-17 03:14:33,325 | INFO     | *************************************
[2024-06-17 05:14:50] 2024-06-17 03:14:33,325 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-17 05:14:50] 2024-06-17 03:14:33,325 | INFO     | *************************************
[2024-06-17 05:14:50] 2024-06-17 03:14:33,325 | INFO     | 
[2024-06-17 05:14:50] 2024-06-17 03:14:33,325 | INFO     | architecture information:
[2024-06-17 05:14:50] 2024-06-17 03:14:33,326 | INFO     | executing command: cat /etc/os-release
[2024-06-17 05:14:50] 2024-06-17 03:14:33,334 | INFO     | cat /etc/os-release:
[2024-06-17 05:14:50] NAME="CentOS Linux"
[2024-06-17 05:14:50] VERSION="7 (Core)"
[2024-06-17 05:14:50] ID="centos"
[2024-06-17 05:14:50] ID_LIKE="rhel fedora"
[2024-06-17 05:14:50] VERSION_ID="7"
[2024-06-17 05:14:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-17 05:14:50] ANSI_COLOR="0;31"
[2024-06-17 05:14:50] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-17 05:14:50] HOME_URL="https://www.centos.org/"
[2024-06-17 05:14:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-17 05:14:50] 
[2024-06-17 05:14:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-17 05:14:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-17 05:14:50] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-17 05:14:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-17 05:14:50] 
[2024-06-17 05:14:50] 2024-06-17 03:14:33,334 | INFO     | *************************************
[2024-06-17 05:14:50] 2024-06-17 03:14:33,837 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2024-06-17 05:14:50] 2024-06-17 03:14:33,845 | INFO     | sufficient remaining disk space (99001303040 B)
[2024-06-17 05:14:50] 2024-06-17 03:14:33,845 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-17 05:14:50] 2024-06-17 03:14:33,846 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-17 05:14:50] 2024-06-17 03:14:33,846 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-06-17 05:14:50] 2024-06-17 03:14:33,846 | INFO     | found 0 job(s) in 20 queues
[2024-06-17 05:14:50] 2024-06-17 03:14:33,846 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-17 05:14:50] 2024-06-17 03:14:33,846 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-17 05:14:50] 2024-06-17 03:14:34,176 | INFO     | all data control threads have been joined
[2024-06-17 05:14:50] 2024-06-17 03:14:34,372 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-17 05:14:50] 2024-06-17 03:14:34,372 | INFO     | aborting loop
[2024-06-17 05:14:50] 2024-06-17 03:14:34,500 | INFO     | all job control threads have been joined
[2024-06-17 05:14:50] 2024-06-17 03:14:34,851 | INFO     | [job] retrieve thread has finished
[2024-06-17 05:14:50] 2024-06-17 03:14:34,875 | INFO     | [payload] execute_payloads thread has finished
[2024-06-17 05:14:50] 2024-06-17 03:14:34,982 | INFO     | all payload control threads have been joined
[2024-06-17 05:14:50] 2024-06-17 03:14:35,182 | INFO     | [data] control thread has finished
[2024-06-17 05:14:50] 2024-06-17 03:14:35,236 | INFO     | [job] validate thread has finished
[2024-06-17 05:14:50] 2024-06-17 03:14:35,317 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-17 05:14:50] 2024-06-17 03:14:35,375 | INFO     | [job] create_data_payload thread has finished
[2024-06-17 05:14:50] 2024-06-17 03:14:35,377 | INFO     | [job] job monitor thread has finished
[2024-06-17 05:14:50] 2024-06-17 03:14:35,506 | INFO     | [job] control thread has finished
[2024-06-17 05:14:50] 2024-06-17 03:14:35,571 | INFO     | [payload] validate_pre thread has finished
[2024-06-17 05:14:50] 2024-06-17 03:14:35,629 | INFO     | [payload] failed_post thread has finished
[2024-06-17 05:14:50] 2024-06-17 03:14:35,745 | INFO     | [data] copytool_in thread has finished
[2024-06-17 05:14:50] 2024-06-17 03:14:35,865 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-17 05:14:50] 2024-06-17 03:14:35,872 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-17 05:14:50] 2024-06-17 03:14:35,987 | INFO     | [payload] control thread has finished
[2024-06-17 05:14:50] 2024-06-17 03:14:36,180 | INFO     | [payload] validate_post thread has finished
[2024-06-17 05:14:50] 2024-06-17 03:14:36,877 | INFO     | [job] queue monitor thread has finished
[2024-06-17 05:14:50] 2024-06-17 03:14:37,323 | INFO     | [data] copytool_out thread has finished
[2024-06-17 05:14:50] 2024-06-17 03:14:39,869 | INFO     | [data] queue_monitor thread has finished
[2024-06-17 05:14:50] 2024-06-17 03:14:43,915 | INFO     | job.realtimelogging is not enabled
[2024-06-17 05:14:50] 2024-06-17 03:14:44,919 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-17 05:14:50] 2024-06-17 03:14:45,151 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140397387560768)>', '<ExcThread(monitor, started 140396759865088)>']
[2024-06-17 05:14:50] 2024-06-17 03:14:45,905 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-17 05:14:50] 2024-06-17 03:14:45,906 | INFO     | [monitor] control thread has ended
[2024-06-17 05:14:50] 2024-06-17 03:14:50,170 | INFO     | all workflow threads have been joined
[2024-06-17 05:14:50] 2024-06-17 03:14:50,170 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-17 05:14:50] 2024-06-17 03:14:50,171 | INFO     | traces error code: 0
[2024-06-17 05:14:50] 2024-06-17 03:14:50,171 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-17 05:14:50] 2024-06-17 03:14:50,225 [wrapper] ==== pilot stdout END ====
[2024-06-17 05:14:50] 2024-06-17 03:14:50,226 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-17 05:14:50] 2024-06-17 03:14:50,227 [wrapper] pilotpid: 501458
[2024-06-17 05:14:50] 2024-06-17 03:14:50,228 [wrapper] Pilot exit status: 0
[2024-06-17 05:14:50] 2024-06-17 03:14:50,233 [wrapper] pandaids: 6231234686
[2024-06-17 05:14:50] 2024-06-17 03:14:50,248 [wrapper] cleanup supervisor_pilot  568347 501459
[2024-06-17 05:14:50] 2024-06-17 03:14:50,249 [wrapper] Test setup, not cleaning
[2024-06-17 05:14:50] 2024-06-17 03:14:50,250 [wrapper] ==== wrapper stdout END ====
[2024-06-17 05:14:50] 2024-06-17 03:14:50,252 [wrapper] ==== wrapper stderr END ====
[2024-06-17 05:14:50] 2024-06-17 03:14:50,254 [wrapper] apfmon messages muted
[2024-06-17 05:14:50]  *** Error codes and diagnostics ***
[2024-06-17 05:14:50]     "exeErrorCode": 0,
[2024-06-17 05:14:50]     "exeErrorDiag": "",
[2024-06-17 05:14:50]     "pilotErrorCode": 0,
[2024-06-17 05:14:50]     "pilotErrorDiag": "",
[2024-06-17 05:14:50]  *** Listing of results directory ***
[2024-06-17 05:14:50] insgesamt 926596
[2024-06-17 05:14:50] -rw-r--r-- 1 boinc boinc    469766 15. Jun 09:04 pilot3.tar.gz
[2024-06-17 05:14:50] -rw-r--r-- 1 boinc boinc      5654 15. Jun 09:21 queuedata.json
[2024-06-17 05:14:50] -rwx------ 1 boinc boinc     32308 15. Jun 09:23 runpilot2-wrapper.sh
[2024-06-17 05:14:50] -rw-r--r-- 1 boinc boinc       100 17. Jun 01:59 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-17 05:14:50] -rwxr-xr-x 1 boinc boinc      7986 17. Jun 01:59 run_atlas
[2024-06-17 05:14:50] -rw-r--r-- 1 boinc boinc       105 17. Jun 01:59 job.xml
[2024-06-17 05:14:50] -rw-r--r-- 2 boinc boinc 586911398 17. Jun 01:59 EVNT.38776201._000591.pool.root.1
[2024-06-17 05:14:50] -rw-r--r-- 2 boinc boinc     17537 17. Jun 01:59 start_atlas.sh
[2024-06-17 05:14:50] drwxrwx--x 2 boinc boinc      4096 17. Jun 01:59 shared
[2024-06-17 05:14:50] -rw-r--r-- 2 boinc boinc    482526 17. Jun 01:59 input.tar.gz
[2024-06-17 05:14:50] -rw-r--r-- 1 boinc boinc      7136 17. Jun 01:59 init_data.xml
[2024-06-17 05:14:50] -rw-r--r-- 1 boinc boinc         0 17. Jun 01:59 boinc_lockfile
[2024-06-17 05:14:50] -rw-r--r-- 1 boinc boinc      2631 17. Jun 01:59 pandaJob.out
[2024-06-17 05:14:50] -rw------- 1 boinc boinc       462 17. Jun 01:59 setup.sh.local
[2024-06-17 05:14:50] -rw------- 1 boinc boinc   1019109 17. Jun 01:59 agis_schedconf.cvmfs.json
[2024-06-17 05:14:50] -rw------- 1 boinc boinc   1316805 17. Jun 01:59 cric_ddmendpoints.json
[2024-06-17 05:14:50] drwx------ 4 boinc boinc      4096 17. Jun 01:59 pilot3
[2024-06-17 05:14:50] -rw------- 1 boinc boinc 355489701 17. Jun 05:13 HITS.38921007._040943.pool.root.1
[2024-06-17 05:14:50] -rw-r--r-- 1 boinc boinc       531 17. Jun 05:14 boinc_task_state.xml
[2024-06-17 05:14:50] -rw------- 1 boinc boinc        95 17. Jun 05:14 pilot_heartbeat.json
[2024-06-17 05:14:50] -rw------- 1 boinc boinc      1025 17. Jun 05:14 memory_monitor_summary.json
[2024-06-17 05:14:50] -rw------- 1 boinc boinc         0 17. Jun 05:14 agis_ddmendpoints.agis.ALL.json
[2024-06-17 05:14:50] -rw------- 1 boinc boinc    337975 17. Jun 05:14 log.38921007._040943.job.log.tgz.1
[2024-06-17 05:14:50] -rw-r--r-- 1 boinc boinc      8192 17. Jun 05:14 boinc_mmap_file
[2024-06-17 05:14:50] -rw-r--r-- 1 boinc boinc        28 17. Jun 05:14 wrapper_checkpoint.txt
[2024-06-17 05:14:50] -rw------- 1 boinc boinc      7681 17. Jun 05:14 heartbeat.json
[2024-06-17 05:14:50] -rw------- 1 boinc boinc      4406 17. Jun 05:14 pilotlog.txt
[2024-06-17 05:14:50] -rw------- 1 boinc boinc   1118167 17. Jun 05:14 log.38921007._040943.job.log.1
[2024-06-17 05:14:50] -rw------- 1 boinc boinc       357 17. Jun 05:14 output.list
[2024-06-17 05:14:50] -rw-r--r-- 1 boinc boinc       620 17. Jun 05:14 runtime_log
[2024-06-17 05:14:50] -rw------- 1 boinc boinc   1474560 17. Jun 05:14 result.tar.gz
[2024-06-17 05:14:50] -rw------- 1 boinc boinc       634 17. Jun 05:14 Vu4LDmovcc5n7Olcko1bjSoqABFKDmABFKDmOtvXDm18oKDmhVahMo.diag
[2024-06-17 05:14:50] -rw-r--r-- 1 boinc boinc     11335 17. Jun 05:14 runtime_log.err
[2024-06-17 05:14:50] -rw-r--r-- 1 boinc boinc     21347 17. Jun 05:14 stderr.txt
[2024-06-17 05:14:50] HITS file was successfully produced:
[2024-06-17 05:14:50] -rw------- 1 boinc boinc 355489701 17. Jun 05:13 shared/HITS.pool.root.1
[2024-06-17 05:14:50]  *** Contents of shared directory: ***
[2024-06-17 05:14:50] insgesamt 922256
[2024-06-17 05:14:50] -rw-r--r-- 2 boinc boinc 586911398 17. Jun 01:59 ATLAS.root_0
[2024-06-17 05:14:50] -rw-r--r-- 2 boinc boinc     17537 17. Jun 01:59 start_atlas.sh
[2024-06-17 05:14:50] -rw-r--r-- 2 boinc boinc    482526 17. Jun 01:59 input.tar.gz
[2024-06-17 05:14:50] -rw------- 1 boinc boinc 355489701 17. Jun 05:13 HITS.pool.root.1
[2024-06-17 05:14:50] -rw------- 1 boinc boinc   1474560 17. Jun 05:14 result.tar.gz
05:14:51 (497256): run_atlas exited; CPU time 66897.128851
05:14:51 (497256): called boinc_finish(0)

</stderr_txt>
]]>

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