Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-15 18:15:56 (3228): Detected: vboxwrapper 26206
2024-06-15 18:15:56 (3228): Detected: BOINC client v7.24.1
2024-06-15 18:15:57 (3228): Detected: VirtualBox VboxManage Interface (Version: 7.0.14)
2024-06-15 18:15:57 (3228): Successfully copied 'init_data.xml' to the shared directory.
2024-06-15 18:15:58 (3228): Create VM. (boinc_54feac15487add7b, slot#2)
2024-06-15 18:15:58 (3228): Setting Memory Size for VM. (4800MB)
2024-06-15 18:15:59 (3228): Setting CPU Count for VM. (8)
2024-06-15 18:15:59 (3228): Setting Chipset Options for VM.
2024-06-15 18:15:59 (3228): Setting Graphics Controller Options for VM.
2024-06-15 18:15:59 (3228): Setting Boot Options for VM.
2024-06-15 18:16:00 (3228): Setting Network Configuration for NAT.
2024-06-15 18:16:00 (3228): Enabling VM Network Access.
2024-06-15 18:16:00 (3228): Disabling USB Support for VM.
2024-06-15 18:16:00 (3228): Disabling COM Port Support for VM.
2024-06-15 18:16:01 (3228): Disabling LPT Port Support for VM.
2024-06-15 18:16:01 (3228): Disabling Audio Support for VM.
2024-06-15 18:16:01 (3228): Disabling Clipboard Support for VM.
2024-06-15 18:16:01 (3228): Disabling Drag and Drop Support for VM.
2024-06-15 18:16:02 (3228): Adding storage controller(s) to VM.
2024-06-15 18:16:02 (3228): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-15 18:16:02 (3228): Adding VirtualBox Guest Additions to VM.
2024-06-15 18:16:03 (3228): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-15 18:16:03 (3228): forwarding host port 50015 to guest port 80
2024-06-15 18:16:03 (3228): Enabling remote desktop for VM.
2024-06-15 18:16:04 (3228): Enabling shared directory for VM.
2024-06-15 18:16:04 (3228): Starting VM using VBoxManage interface. (boinc_54feac15487add7b, slot#2)
2024-06-15 18:16:09 (3228): Successfully started VM. (PID = '19772')
2024-06-15 18:16:09 (3228): Reporting VM Process ID to BOINC.
2024-06-15 18:16:09 (3228): Guest Log: BIOS: VirtualBox 7.0.14
2024-06-15 18:16:09 (3228): Guest Log: CPUID EDX: 0x178bfbff
2024-06-15 18:16:09 (3228): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-15 18:16:09 (3228): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-15 18:16:09 (3228): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-15 18:16:09 (3228): Detected: Web Application Enabled (http://localhost:50015)
2024-06-15 18:16:09 (3228): Detected: Remote Desktop Enabled (localhost:50016)
2024-06-15 18:16:09 (3228): Preference change detected
2024-06-15 18:16:09 (3228): Setting CPU throttle for VM. (70%)
2024-06-15 18:16:09 (3228): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-15 18:16:11 (3228): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-15 18:16:11 (3228): Guest Log: BIOS: Booting from Hard Disk...
2024-06-15 18:16:14 (3228): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-15 18:16:14 (3228): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-15 18:16:14 (3228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-15 18:16:14 (3228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-15 18:16:14 (3228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-15 18:16:14 (3228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-15 18:16:14 (3228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-15 18:16:14 (3228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-15 18:16:14 (3228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-15 18:16:14 (3228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-15 18:16:14 (3228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-15 18:16:14 (3228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-15 18:16:14 (3228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-15 18:16:14 (3228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-15 18:16:14 (3228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-15 18:16:14 (3228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-15 18:16:14 (3228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-15 18:16:14 (3228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-15 18:16:14 (3228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-15 18:16:14 (3228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-15 18:16:14 (3228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-15 18:16:14 (3228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-15 18:16:14 (3228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-15 18:16:14 (3228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-15 18:16:14 (3228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-15 18:16:14 (3228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-15 18:16:14 (3228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-15 18:16:14 (3228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-15 18:16:14 (3228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-15 18:16:14 (3228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-15 18:16:14 (3228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-15 18:16:14 (3228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-15 18:16:19 (3228): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-15 18:16:19 (3228): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-15 18:16:23 (3228): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-15 18:16:23 (3228): Guest Log: 00:00:00.000108 main     Log opened 2024-06-15T18:16:20.891874000Z
2024-06-15 18:16:23 (3228): Guest Log: 00:00:00.000181 main     OS Product: Linux
2024-06-15 18:16:23 (3228): Guest Log: 00:00:00.000205 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-15 18:16:23 (3228): Guest Log: 00:00:00.000226 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-15 18:16:23 (3228): Guest Log: 00:00:00.000246 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-15 18:16:23 (3228): Guest Log: 00:00:00.000246 main     Process ID: 1366
2024-06-15 18:16:23 (3228): Guest Log: 00:00:00.000247 main     Package type: LINUX_64BITS_GENERIC
2024-06-15 18:16:23 (3228): Guest Log: 00:00:00.003558 main     5.2.32 r132073 started. Verbose level = 0
2024-06-15 18:16:23 (3228): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-15 18:16:23 (3228): Guest Log: [INFO] Mounting shared directory
2024-06-15 18:16:23 (3228): Guest Log: [INFO] Checking for init_data.xml
2024-06-15 18:16:33 (3228): Guest Log: 00:00:10.039039 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 787 968 172 000ns (GuestNow=1 718 464 592 933 804 000 ns GuestLast=1 718 475 380 901 976 000 ns fSetTimeLastLoop=true )
2024-06-15 18:16:39 (3228): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-15 18:16:39 (3228): Guest Log: [INFO] Detected branch: prod
2024-06-15 18:16:40 (3228): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-15 18:16:40 (3228): Guest Log: Copying input files
2024-06-15 18:16:42 (3228): Guest Log: Copied input files into RunAtlas.
2024-06-15 18:16:42 (3228): Guest Log: Detected user-configured HTTP proxy at http://proxy:3128 - will set in /etc/cvmfs/default.local
2024-06-15 18:17:45 (3228): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-15 18:17:45 (3228): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-15 18:17:45 (3228): Guest Log: 2.6.3.0 1649 1 29576 133909 4 1 3117205 4096000 0 65024 0 0 n/a 1 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
2024-06-15 18:17:46 (3228): Guest Log: copied the webapp to /var/www
2024-06-15 18:17:46 (3228): Guest Log: ATHENA_PROC_NUMBER=8
2024-06-15 18:17:46 (3228): Guest Log: ATHENA_CORE_NUMBER=8
2024-06-15 18:17:46 (3228): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-15 18:17:46 (3228): Guest Log:  *** Starting ATLAS job. (PandaID=6229933098 taskID=38921013) ***
2024-06-15 18:56:40 (3228): VM state change detected. (old = 'running', new = 'paused')
2024-06-15 18:57:00 (3228): VM state change detected. (old = 'paused', new = 'running')
2024-06-15 19:04:03 (3228): VM state change detected. (old = 'running', new = 'paused')
2024-06-15 19:04:23 (3228): VM state change detected. (old = 'paused', new = 'running')
2024-06-15 19:06:34 (3228): VM state change detected. (old = 'running', new = 'paused')
2024-06-15 19:06:54 (3228): VM state change detected. (old = 'paused', new = 'running')
2024-06-15 19:15:25 (3228): VM state change detected. (old = 'running', new = 'paused')
2024-06-15 19:15:46 (3228): VM state change detected. (old = 'paused', new = 'running')
2024-06-15 19:57:39 (3228): Status Report: Elapsed Time: '6000.000000'
2024-06-15 19:57:39 (3228): Status Report: CPU Time: '6881.281250'
2024-06-15 20:29:08 (3228): VM state change detected. (old = 'running', new = 'paused')
2024-06-15 20:29:29 (3228): VM state change detected. (old = 'paused', new = 'running')
2024-06-15 20:56:38 (3228): Guest Log:  *** Job finished ***
2024-06-15 20:56:38 (3228): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-15 20:56:38 (3228): Guest Log: 2024-06-15 17:54:47,026 | INFO     | [data] queue_monitor thread has finished
2024-06-15 20:56:38 (3228): Guest Log: 2024-06-15 17:54:49,851 | INFO     | job.realtimelogging is not enabled
2024-06-15 20:56:38 (3228): Guest Log: 2024-06-15 17:54:50,859 | INFO     | [payload] run_realtimelog thread has finished
2024-06-15 20:56:38 (3228): Guest Log: 2024-06-15 17:54:52,885 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139815340099392)>', '<ExcThread(monitor, started 139814900836096)>']
2024-06-15 20:56:38 (3228): Guest Log: 2024-06-15 17:54:53,751 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-15 20:56:38 (3228): Guest Log: 2024-06-15 17:54:53,751 | INFO     | [monitor] control thread has ended
2024-06-15 20:56:38 (3228): Guest Log: 2024-06-15 17:54:57,900 | INFO     | all workflow threads have been joined
2024-06-15 20:56:38 (3228): Guest Log: 2024-06-15 17:54:57,900 | INFO     | end of generic workflow (traces error code: 0)
2024-06-15 20:56:38 (3228): Guest Log: 2024-06-15 17:54:57,900 | INFO     | traces error code: 0
2024-06-15 20:56:38 (3228): Guest Log: 2024-06-15 17:54:57,900 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-15 20:56:38 (3228): Guest Log: 2024-06-15 17:54:57,950 [wrapper] ==== pilot stdout END ====
2024-06-15 20:56:38 (3228): Guest Log: 2024-06-15 17:54:57,953 [wrapper] ==== wrapper stdout RESUME ====
2024-06-15 20:56:38 (3228): Guest Log: 2024-06-15 17:54:57,959 [wrapper] pilotpid: 6628
2024-06-15 20:56:38 (3228): Guest Log: 2024-06-15 17:54:57,962 [wrapper] Pilot exit status: 0
2024-06-15 20:56:38 (3228): Guest Log: 2024-06-15 17:54:58,104 [wrapper] pandaids: 6229933098
2024-06-15 20:56:38 (3228): Guest Log: 2024-06-15 17:54:58,121 [wrapper] cleanup supervisor_pilot  7788 6629
2024-06-15 20:56:38 (3228): Guest Log: 2024-06-15 17:54:58,126 [wrapper] Test setup, not cleaning
2024-06-15 20:56:38 (3228): Guest Log: 2024-06-15 17:54:58,128 [wrapper] ==== wrapper stdout END ====
2024-06-15 20:56:38 (3228): Guest Log: 2024-06-15 17:54:58,131 [wrapper] ==== wrapper stderr END ====
2024-06-15 20:56:38 (3228): Guest Log: 2024-06-15 17:54:58,137 [wrapper] apfmon messages muted
2024-06-15 20:56:38 (3228): Guest Log:  *** Error codes and diagnostics ***
2024-06-15 20:56:38 (3228): Guest Log:     "exeErrorCode": 0,
2024-06-15 20:56:38 (3228): Guest Log:     "exeErrorDiag": "",
2024-06-15 20:56:38 (3228): Guest Log:     "pilotErrorCode": 0,
2024-06-15 20:56:38 (3228): Guest Log:     "pilotErrorDiag": "",
2024-06-15 20:56:38 (3228): Guest Log:  *** Listing of results directory ***
2024-06-15 20:56:38 (3228): Guest Log: total 341796
2024-06-15 20:56:38 (3228): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 14 03:57 pilot3.tar.gz
2024-06-15 20:56:38 (3228): Guest Log: -rwx------. 1 atlas atlas     32308 Jun 14 04:42 runpilot2-wrapper.sh
2024-06-15 20:56:38 (3228): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 14 04:42 queuedata.json
2024-06-15 20:56:38 (3228): Guest Log: -rwxr-xr-x. 1 atlas atlas      9324 Jun 15 15:16 init_data.xml
2024-06-15 20:56:38 (3228): Guest Log: -rwxr-xr-x. 1 atlas atlas    482523 Jun 15 15:16 input.tar.gz
2024-06-15 20:56:38 (3228): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Jun 15 15:16 start_atlas.sh
2024-06-15 20:56:38 (3228): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 15 15:16 EVNT.38776210._000852.pool.root.1 -> /data/./ATLAS.root_0
2024-06-15 20:56:38 (3228): Guest Log: -rw-r--r--. 1 atlas atlas      2648 Jun 15 15:17 pandaJob.out
2024-06-15 20:56:38 (3228): Guest Log: -rw-------. 1 atlas atlas       452 Jun 15 15:18 setup.sh.local
2024-06-15 20:56:38 (3228): Guest Log: -rw-------. 1 atlas atlas   1020872 Jun 15 15:21 agis_schedconf.cvmfs.json
2024-06-15 20:56:38 (3228): Guest Log: -rw-------. 1 atlas atlas         0 Jun 15 15:21 agis_ddmendpoints.agis.ALL.json
2024-06-15 20:56:38 (3228): Guest Log: -rw-------. 1 atlas atlas   1316805 Jun 15 15:21 cric_ddmendpoints.json
2024-06-15 20:56:38 (3228): Guest Log: drwx------. 4 atlas atlas      4096 Jun 15 15:21 pilot3
2024-06-15 20:56:38 (3228): Guest Log: -rw-------. 1 atlas atlas 344548943 Jun 15 17:54 HITS.38921013._033286.pool.root.1
2024-06-15 20:56:38 (3228): Guest Log: -rw-------. 1 atlas atlas      1029 Jun 15 17:54 memory_monitor_summary.json
2024-06-15 20:56:38 (3228): Guest Log: -rw-------. 1 atlas atlas        95 Jun 15 17:54 pilot_heartbeat.json
2024-06-15 20:56:38 (3228): Guest Log: -rw-------. 1 atlas atlas    326544 Jun 15 17:54 log.38921013._033286.job.log.tgz.1
2024-06-15 20:56:38 (3228): Guest Log: -rw-------. 1 atlas atlas      7727 Jun 15 17:54 heartbeat.json
2024-06-15 20:56:38 (3228): Guest Log: -rw-------. 1 atlas atlas      4466 Jun 15 17:54 pilotlog.txt
2024-06-15 20:56:38 (3228): Guest Log: -rw-------. 1 atlas atlas    671584 Jun 15 17:54 log.38921013._033286.job.log.1
2024-06-15 20:56:38 (3228): Guest Log: -rw-------. 1 atlas atlas       357 Jun 15 17:54 output.list
2024-06-15 20:56:38 (3228): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 15 17:54 runtime_log
2024-06-15 20:56:38 (3228): Guest Log: -rw-------. 1 atlas atlas   1013760 Jun 15 17:54 result.tar.gz
2024-06-15 20:56:38 (3228): Guest Log: -rw-r--r--. 1 atlas atlas     11233 Jun 15 17:54 runtime_log.err
2024-06-15 20:56:38 (3228): Guest Log: -rw-------. 1 atlas atlas       641 Jun 15 17:54 5HKNDmSwDc5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDm3deKDmCyrSqn.diag
2024-06-15 20:56:38 (3228): Guest Log: Looking for outputfile HITS.38921013._033286.pool.root.1
2024-06-15 20:56:38 (3228): Guest Log: HITS file was successfully produced
2024-06-15 20:56:38 (3228): Guest Log: -rw-------. 1 atlas atlas 344548943 Jun 15 17:54 /home/atlas/RunAtlas/HITS.38921013._033286.pool.root.1
2024-06-15 20:56:39 (3228): Guest Log: Successfully finished the ATLAS job!
2024-06-15 20:56:39 (3228): Guest Log: Copying the results back to the shared directory!
2024-06-15 20:56:39 (3228): Guest Log:  *** Contents of shared directory: ***
2024-06-15 20:56:39 (3228): Guest Log: total 865852
2024-06-15 20:56:39 (3228): Guest Log: -rwxrwxrwx. 1 root root 540547083 Jun 15 15:15 ATLAS.root_0
2024-06-15 20:56:39 (3228): Guest Log: -rwxrwxrwx. 1 root root 344548943 Jun 15  2024 HITS.pool.root.1
2024-06-15 20:56:39 (3228): Guest Log: -rwxrwxrwx. 1 root root      9324 Jun 15 15:15 init_data.xml
2024-06-15 20:56:39 (3228): Guest Log: -rwxrwxrwx. 1 root root    482523 Jun 14 10:57 input.tar.gz
2024-06-15 20:56:39 (3228): Guest Log: -rwxrwxrwx. 1 root root   1013760 Jun 15  2024 result.tar.gz
2024-06-15 20:56:39 (3228): Guest Log: -rwxrwxrwx. 1 root root     17537 Jun 14 10:57 start_atlas.sh
2024-06-15 20:56:39 (3228): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-15 20:56:39 (3228): VM Completion File Detected.
2024-06-15 20:56:39 (3228): Powering off VM.
2024-06-15 20:56:39 (3228): Successfully stopped VM.
2024-06-15 20:56:39 (3228): Deregistering VM. (boinc_54feac15487add7b, slot#2)
2024-06-15 20:56:39 (3228): Removing network bandwidth throttle group from VM.
2024-06-15 20:56:40 (3228): Removing VM from VirtualBox.
20:56:45 (3228): called boinc_finish(0)

</stderr_txt>
]]>

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