Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-14 12:13:30 (1261474): Detected: vboxwrapper 26206
2024-06-14 12:13:30 (1261474): Detected: BOINC client v8.0.2
2024-06-14 12:13:30 (1261474): Detected: VirtualBox VboxManage Interface (Version: 7.0.16)
2024-06-14 12:13:30 (1261474): Successfully copied 'init_data.xml' to the shared directory.
2024-06-14 12:13:30 (1261474): Create VM. (boinc_e821927050c03907, slot#0)
2024-06-14 12:13:30 (1261474): Setting Memory Size for VM. (4096MB)
2024-06-14 12:13:30 (1261474): Setting CPU Count for VM. (1)
2024-06-14 12:13:31 (1261474): Setting Chipset Options for VM.
2024-06-14 12:13:31 (1261474): Setting Graphics Controller Options for VM.
2024-06-14 12:13:31 (1261474): Setting Boot Options for VM.
2024-06-14 12:13:31 (1261474): Setting Network Configuration for NAT.
2024-06-14 12:13:31 (1261474): Enabling VM Network Access.
2024-06-14 12:13:31 (1261474): Disabling USB Support for VM.
2024-06-14 12:13:31 (1261474): Disabling COM Port Support for VM.
2024-06-14 12:13:31 (1261474): Disabling LPT Port Support for VM.
2024-06-14 12:13:31 (1261474): Disabling Audio Support for VM.
2024-06-14 12:13:31 (1261474): Disabling Clipboard Support for VM.
2024-06-14 12:13:31 (1261474): Disabling Drag and Drop Support for VM.
2024-06-14 12:13:32 (1261474): Adding storage controller(s) to VM.
2024-06-14 12:13:32 (1261474): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-14 12:13:32 (1261474): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-14 12:13:32 (1261474): forwarding host port 37521 to guest port 80
2024-06-14 12:13:32 (1261474): Enabling remote desktop for VM.
2024-06-14 12:13:32 (1261474): Enabling shared directory for VM.
2024-06-14 12:13:32 (1261474): Starting VM using VBoxManage interface. (boinc_e821927050c03907, slot#0)
2024-06-14 12:13:34 (1261474): Successfully started VM. (PID = '1261885')
2024-06-14 12:13:34 (1261474): Reporting VM Process ID to BOINC.
2024-06-14 12:13:34 (1261474): Guest Log: BIOS: VirtualBox 7.0.16
2024-06-14 12:13:34 (1261474): Guest Log: CPUID EDX: 0x178bfbff
2024-06-14 12:13:34 (1261474): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-14 12:13:34 (1261474): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-14 12:13:34 (1261474): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-14 12:13:34 (1261474): Detected: Web Application Enabled (http://localhost:37521)
2024-06-14 12:13:34 (1261474): Detected: Remote Desktop Enabled (localhost:56819)
2024-06-14 12:13:34 (1261474): Preference change detected
2024-06-14 12:13:34 (1261474): Setting CPU throttle for VM. (100%)
2024-06-14 12:13:34 (1261474): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-14 12:13:36 (1261474): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-14 12:13:36 (1261474): Guest Log: BIOS: Booting from Hard Disk...
2024-06-14 12:13:39 (1261474): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-14 12:13:39 (1261474): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-14 12:13:39 (1261474): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-14 12:13:39 (1261474): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-14 12:13:39 (1261474): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-14 12:13:39 (1261474): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-14 12:13:39 (1261474): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-14 12:13:39 (1261474): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-14 12:13:39 (1261474): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-14 12:13:39 (1261474): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-14 12:13:39 (1261474): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-14 12:13:39 (1261474): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-14 12:13:39 (1261474): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-14 12:13:39 (1261474): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-14 12:13:39 (1261474): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-14 12:13:39 (1261474): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-14 12:13:39 (1261474): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-14 12:13:39 (1261474): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-14 12:13:39 (1261474): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-14 12:13:39 (1261474): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-14 12:13:39 (1261474): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-14 12:13:39 (1261474): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-14 12:13:39 (1261474): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-14 12:13:39 (1261474): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-14 12:13:39 (1261474): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-14 12:13:39 (1261474): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-14 12:13:39 (1261474): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-14 12:13:39 (1261474): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-14 12:13:39 (1261474): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-14 12:13:39 (1261474): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-14 12:13:39 (1261474): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-14 12:13:39 (1261474): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-14 12:13:44 (1261474): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-14 12:13:44 (1261474): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-14 12:13:58 (1261474): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-14 12:13:58 (1261474): Guest Log: 00:00:00.000245 main     Log opened 2024-06-14T10:13:57.285947000Z
2024-06-14 12:13:58 (1261474): Guest Log: 00:00:00.000449 main     OS Product: Linux
2024-06-14 12:13:58 (1261474): Guest Log: 00:00:00.000526 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-14 12:13:58 (1261474): Guest Log: 00:00:00.000602 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-14 12:13:58 (1261474): Guest Log: 00:00:00.000667 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-14 12:13:58 (1261474): Guest Log: 00:00:00.000668 main     Process ID: 1238
2024-06-14 12:13:58 (1261474): Guest Log: 00:00:00.000669 main     Package type: LINUX_64BITS_GENERIC
2024-06-14 12:13:58 (1261474): Guest Log: 00:00:00.003077 main     5.2.32 r132073 started. Verbose level = 0
2024-06-14 12:13:58 (1261474): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-14 12:13:58 (1261474): Guest Log: [INFO] Mounting shared directory
2024-06-14 12:13:58 (1261474): Guest Log: [INFO] Checking for init_data.xml
2024-06-14 12:14:06 (1261474): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-14 12:14:06 (1261474): Guest Log: [INFO] Detected branch: prod
2024-06-14 12:14:06 (1261474): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-14 12:14:06 (1261474): Guest Log: Copying input files
2024-06-14 12:14:11 (1261474): Guest Log: Copied input files into RunAtlas.
2024-06-14 12:14:11 (1261474): Guest Log: Detected user-configured HTTP proxy at http://localhost:3128 - will set in /etc/cvmfs/default.local
2024-06-14 12:14:33 (1261474): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-14 12:14:33 (1261474): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-14 12:14:33 (1261474): Guest Log: 2.6.3.0 1524 0 31712 133865 4 1 3119736 4096000 0 65024 0 0 n/a 1141 390 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
2024-06-14 12:14:34 (1261474): Guest Log: copied the webapp to /var/www
2024-06-14 12:14:34 (1261474): Guest Log: core_number=1
2024-06-14 12:14:34 (1261474): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-14 12:14:35 (1261474): Guest Log:  *** Starting ATLAS job. (PandaID=6233033821 taskID=38776125) ***
2024-06-14 13:52:34 (1261474): Status Report: Elapsed Time: '6000.000000'
2024-06-14 13:52:34 (1261474): Status Report: CPU Time: '5184.090000'
2024-06-14 15:31:35 (1261474): Status Report: Elapsed Time: '12000.000000'
2024-06-14 15:31:35 (1261474): Status Report: CPU Time: '11132.180000'
2024-06-14 17:10:35 (1261474): Status Report: Elapsed Time: '18000.000000'
2024-06-14 17:10:35 (1261474): Status Report: CPU Time: '17079.140000'
2024-06-14 18:49:36 (1261474): Status Report: Elapsed Time: '24000.000000'
2024-06-14 18:49:36 (1261474): Status Report: CPU Time: '23028.020000'
2024-06-14 20:28:37 (1261474): Status Report: Elapsed Time: '30000.000000'
2024-06-14 20:28:37 (1261474): Status Report: CPU Time: '28971.620000'
2024-06-14 22:07:37 (1261474): Status Report: Elapsed Time: '36000.000000'
2024-06-14 22:07:37 (1261474): Status Report: CPU Time: '34919.560000'
2024-06-14 23:46:38 (1261474): Status Report: Elapsed Time: '42000.000000'
2024-06-14 23:46:38 (1261474): Status Report: CPU Time: '40868.310000'
2024-06-15 01:23:25 (1261474): Guest Log:  *** Job finished ***
2024-06-15 01:23:25 (1261474): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-15 01:23:25 (1261474): Guest Log: 2024-06-14 23:23:05,779 | INFO     | [data] queue_monitor thread has finished
2024-06-15 01:23:25 (1261474): Guest Log: 2024-06-14 23:23:12,032 | INFO     | job.realtimelogging is not enabled
2024-06-15 01:23:25 (1261474): Guest Log: 2024-06-14 23:23:13,034 | INFO     | [payload] run_realtimelog thread has finished
2024-06-15 01:23:25 (1261474): Guest Log: 2024-06-14 23:23:15,010 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140637226866496)>', '<ExcThread(monitor, started 140636783093504)>']
2024-06-15 01:23:25 (1261474): Guest Log: 2024-06-14 23:23:15,792 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-15 01:23:25 (1261474): Guest Log: 2024-06-14 23:23:15,792 | INFO     | [monitor] control thread has ended
2024-06-15 01:23:25 (1261474): Guest Log: 2024-06-14 23:23:20,016 | INFO     | all workflow threads have been joined
2024-06-15 01:23:25 (1261474): Guest Log: 2024-06-14 23:23:20,017 | INFO     | end of generic workflow (traces error code: 0)
2024-06-15 01:23:25 (1261474): Guest Log: 2024-06-14 23:23:20,017 | INFO     | traces error code: 0
2024-06-15 01:23:25 (1261474): Guest Log: 2024-06-14 23:23:20,017 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-15 01:23:25 (1261474): Guest Log: 2024-06-14 23:23:20,108 [wrapper] ==== pilot stdout END ====
2024-06-15 01:23:25 (1261474): Guest Log: 2024-06-14 23:23:20,114 [wrapper] ==== wrapper stdout RESUME ====
2024-06-15 01:23:25 (1261474): Guest Log: 2024-06-14 23:23:20,119 [wrapper] pilotpid: 6362
2024-06-15 01:23:25 (1261474): Guest Log: 2024-06-14 23:23:20,123 [wrapper] Pilot exit status: 0
2024-06-15 01:23:25 (1261474): Guest Log: 2024-06-14 23:23:24,729 [wrapper] pandaids: 6233033821
2024-06-15 01:23:25 (1261474): Guest Log: 2024-06-14 23:23:24,766 [wrapper] cleanup supervisor_pilot 11225 6363
2024-06-15 01:23:25 (1261474): Guest Log: 2024-06-14 23:23:24,772 [wrapper] Test setup, not cleaning
2024-06-15 01:23:25 (1261474): Guest Log: 2024-06-14 23:23:24,776 [wrapper] ==== wrapper stdout END ====
2024-06-15 01:23:25 (1261474): Guest Log: 2024-06-14 23:23:24,782 [wrapper] ==== wrapper stderr END ====
2024-06-15 01:23:25 (1261474): Guest Log: 2024-06-14 23:23:24,791 [wrapper] apfmon messages muted
2024-06-15 01:23:25 (1261474): Guest Log:  *** Error codes and diagnostics ***
2024-06-15 01:23:25 (1261474): Guest Log:     "exeErrorCode": 0,
2024-06-15 01:23:25 (1261474): Guest Log:     "exeErrorDiag": "",
2024-06-15 01:23:25 (1261474): Guest Log:     "pilotErrorCode": 0,
2024-06-15 01:23:25 (1261474): Guest Log:     "pilotErrorDiag": "",
2024-06-15 01:23:25 (1261474): Guest Log:  *** Listing of results directory ***
2024-06-15 01:23:25 (1261474): Guest Log: total 267240
2024-06-15 01:23:25 (1261474): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 14 03:02 pilot3.tar.gz
2024-06-15 01:23:25 (1261474): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 14 03:41 queuedata.json
2024-06-15 01:23:25 (1261474): Guest Log: -rwx------. 1 atlas atlas     32308 Jun 14 03:45 runpilot2-wrapper.sh
2024-06-15 01:23:25 (1261474): Guest Log: -rw-r--r--. 1 atlas atlas      9680 Jun 14 10:14 init_data.xml
2024-06-15 01:23:25 (1261474): Guest Log: -rw-r--r--. 1 atlas atlas    482546 Jun 14 10:14 input.tar.gz
2024-06-15 01:23:25 (1261474): Guest Log: -rw-r--r--. 1 atlas atlas     17537 Jun 14 10:14 start_atlas.sh
2024-06-15 01:23:25 (1261474): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 14 10:14 EVNT.38776119._000756.pool.root.1 -> /data/./ATLAS.root_0
2024-06-15 01:23:25 (1261474): Guest Log: -rw-r--r--. 1 atlas atlas      2635 Jun 14 10:14 pandaJob.out
2024-06-15 01:23:25 (1261474): Guest Log: -rw-------. 1 atlas atlas       456 Jun 14 10:14 setup.sh.local
2024-06-15 01:23:25 (1261474): Guest Log: -rw-------. 1 atlas atlas   1016639 Jun 14 10:16 agis_schedconf.cvmfs.json
2024-06-15 01:23:25 (1261474): Guest Log: -rw-------. 1 atlas atlas   1316798 Jun 14 10:16 cric_ddmendpoints.json
2024-06-15 01:23:25 (1261474): Guest Log: drwx------. 4 atlas atlas      4096 Jun 14 10:16 pilot3
2024-06-15 01:23:25 (1261474): Guest Log: -rw-------. 1 atlas atlas 257454783 Jun 14 23:21 HITS.38776125._064132.pool.root.1
2024-06-15 01:23:25 (1261474): Guest Log: -rw-------. 1 atlas atlas      1035 Jun 14 23:22 memory_monitor_summary.json
2024-06-15 01:23:25 (1261474): Guest Log: -rw-------. 1 atlas atlas         0 Jun 14 23:22 agis_ddmendpoints.agis.ALL.json
2024-06-15 01:23:25 (1261474): Guest Log: -rw-------. 1 atlas atlas    667940 Jun 14 23:22 log.38776125._064132.job.log.tgz.1
2024-06-15 01:23:25 (1261474): Guest Log: -rw-------. 1 atlas atlas        95 Jun 14 23:22 pilot_heartbeat.json
2024-06-15 01:23:25 (1261474): Guest Log: -rw-------. 1 atlas atlas      7716 Jun 14 23:22 heartbeat.json
2024-06-15 01:23:25 (1261474): Guest Log: -rw-------. 1 atlas atlas      4466 Jun 14 23:23 pilotlog.txt
2024-06-15 01:23:25 (1261474): Guest Log: -rw-------. 1 atlas atlas   5697579 Jun 14 23:23 log.38776125._064132.job.log.1
2024-06-15 01:23:25 (1261474): Guest Log: -rw-------. 1 atlas atlas       357 Jun 14 23:23 output.list
2024-06-15 01:23:25 (1261474): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 14 23:23 runtime_log
2024-06-15 01:23:25 (1261474): Guest Log: -rw-------. 1 atlas atlas   6389760 Jun 14 23:23 result.tar.gz
2024-06-15 01:23:25 (1261474): Guest Log: -rw-r--r--. 1 atlas atlas     11143 Jun 14 23:23 runtime_log.err
2024-06-15 01:23:25 (1261474): Guest Log: -rw-------. 1 atlas atlas       646 Jun 14 23:23 lgrNDmX3Cc5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmCbeKDmNGwbvn.diag
2024-06-15 01:23:25 (1261474): Guest Log: Looking for outputfile HITS.38776125._064132.pool.root.1
2024-06-15 01:23:25 (1261474): Guest Log: HITS file was successfully produced
2024-06-15 01:23:25 (1261474): Guest Log: -rw-------. 1 atlas atlas 257454783 Jun 14 23:21 /home/atlas/RunAtlas/HITS.38776125._064132.pool.root.1
2024-06-15 01:23:26 (1261474): Guest Log: Successfully finished the ATLAS job!
2024-06-15 01:23:26 (1261474): Guest Log: Copying the results back to the shared directory!
2024-06-15 01:23:26 (1261474): Guest Log:  *** Contents of shared directory: ***
2024-06-15 01:23:26 (1261474): Guest Log: total 597404
2024-06-15 01:23:26 (1261474): Guest Log: -rw-r--r--. 1 root root 604829876 Jun 14 10:13 ATLAS.root_0
2024-06-15 01:23:26 (1261474): Guest Log: -rw-r--r--. 1 root root      9680 Jun 14 10:13 init_data.xml
2024-06-15 01:23:26 (1261474): Guest Log: -rw-r--r--. 1 root root    482546 Jun 14 10:13 input.tar.gz
2024-06-15 01:23:26 (1261474): Guest Log: -rw-r--r--. 1 root root   6389760 Jun 14 23:23 result.tar.gz
2024-06-15 01:23:26 (1261474): Guest Log: -rw-r--r--. 1 root root     17537 Jun 14 10:13 start_atlas.sh
2024-06-15 01:23:26 (1261474): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-15 01:23:26 (1261474): VM Completion File Detected.
2024-06-15 01:23:26 (1261474): Powering off VM.
2024-06-15 01:23:26 (1261474): Successfully stopped VM.
2024-06-15 01:23:26 (1261474): Deregistering VM. (boinc_e821927050c03907, slot#0)
2024-06-15 01:23:26 (1261474): Removing network bandwidth throttle group from VM.
2024-06-15 01:23:26 (1261474): Removing VM from VirtualBox.
01:23:32 (1261474): called boinc_finish(0)

</stderr_txt>
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