Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:41:20 (39399): wrapper (7.7.26015): starting
18:41:20 (39399): wrapper: running run_atlas (--nthreads 8)
[2024-06-13 18:41:20] Arguments: --nthreads 8
[2024-06-13 18:41:20] Threads: 8
[2024-06-13 18:41:20] Checking for CVMFS
[2024-06-13 18:41:21] Probing /cvmfs/atlas.cern.ch... OK
[2024-06-13 18:41:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-06-13 18:41:21] Running cvmfs_config stat atlas.cern.ch
[2024-06-13 18:41:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-06-13 18:41:21] 2.11.2.0 84859 3013 155712 133848 1 260 16029910 18432000 12946 130560 0 18377536 99.454 18625177 52685 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2024-06-13 18:41:21] CVMFS is ok
[2024-06-13 18:41:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-13 18:41:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-13 18:41:21] Further information can be found at the LHC@home message board.
[2024-06-13 18:41:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-13 18:41:21] Checking for apptainer binary...
[2024-06-13 18:41:21] Using apptainer found in PATH at /usr/bin/apptainer
[2024-06-13 18:41:21] Running /usr/bin/apptainer --version
[2024-06-13 18:41:21] apptainer version 1.3.1-1.el7
[2024-06-13 18:41:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-13 18:41:25] c-212-2.aglt2.org
[2024-06-13 18:41:25] apptainer works
[2024-06-13 18:41:25] Set ATHENA_PROC_NUMBER=8
[2024-06-13 18:41:25] Set ATHENA_CORE_NUMBER=8
[2024-06-13 18:41:25] Starting ATLAS job with PandaID=6229525972
[2024-06-13 18:41:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-14 09:08:46]  *** The last 200 lines of the pilot log: ***
[2024-06-14 09:08:46] 2024-06-14 13:08:29,385 | INFO     | preparing for final server update for job 6229525972 in state='finished'
[2024-06-14 09:08:46] 2024-06-14 13:08:29,386 | INFO     | this job has now completed (state=finished)
[2024-06-14 09:08:46] 2024-06-14 13:08:29,386 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-06-14 09:08:46] 2024-06-14 13:08:29,386 | INFO     | job 6229525972 has finished - writing final server update
[2024-06-14 09:08:46] 2024-06-14 13:08:29,386 | INFO     | total number of processed events: 400 (read)
[2024-06-14 09:08:46] 2024-06-14 13:08:29,389 | INFO     | executing command: lscpu
[2024-06-14 09:08:46] 2024-06-14 13:08:29,413 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-06-14 09:08:46] 2024-06-14 13:08:29,413 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-06-14 09:08:46] 2024-06-14 13:08:29,421 | INFO     | monitor loop #3632: job 0:6229525972 is in state 'finished'
[2024-06-14 09:08:46] 2024-06-14 13:08:29,421 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-06-14 09:08:46] 2024-06-14 13:08:29,440 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-06-14 09:08:46] 2024-06-14 13:08:31,922 | INFO     | monitor loop #3633: job 0:6229525972 is in state 'finished'
[2024-06-14 09:08:46] 2024-06-14 13:08:31,922 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-06-14 09:08:46] 2024-06-14 13:08:32,135 | INFO     | CPU arch script returned: x86-64-v3
[2024-06-14 09:08:46] 2024-06-14 13:08:32,136 | INFO     | using path: /tmp/boinchome/slots/10/PanDA_Pilot-6229525972/memory_monitor_summary.json (trf name=prmon)
[2024-06-14 09:08:46] 2024-06-14 13:08:32,136 | INFO     | extracted standard info from prmon json
[2024-06-14 09:08:46] 2024-06-14 13:08:32,136 | INFO     | extracted standard memory fields from prmon json
[2024-06-14 09:08:46] 2024-06-14 13:08:32,136 | WARNING  | GPU info not found in prmon json
[2024-06-14 09:08:46] 2024-06-14 13:08:32,136 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-06-14 09:08:46] 2024-06-14 13:08:32,136 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-06-14 09:08:46] 2024-06-14 13:08:32,143 | INFO     | fitting pss+swap vs Time
[2024-06-14 09:08:46] 2024-06-14 13:08:32,144 | INFO     | model: linear, x: [1718318550.0, 1718318611.0, 1718318672.0, 1718318733.0, 1718318794.0, 1718318855.0, 1718318916.0, 1718318977.0, 1718319038.0, 1718319099.0, 1718
[2024-06-14 09:08:46] 2024-06-14 13:08:32,144 | INFO     | sum of square deviations: 191778484167.70303
[2024-06-14 09:08:46] 2024-06-14 13:08:32,151 | INFO     | sum of deviations: 1738367810262.9573
[2024-06-14 09:08:46] 2024-06-14 13:08:32,151 | INFO     | mean x: 1718344505.60446
[2024-06-14 09:08:46] 2024-06-14 13:08:32,151 | INFO     | mean y: 2473948.1690140846
[2024-06-14 09:08:46] 2024-06-14 13:08:32,151 | INFO     | -- intersect: -15573385817.584948
[2024-06-14 09:08:46] 2024-06-14 13:08:32,151 | INFO     | intersect: -15573385817.584948
[2024-06-14 09:08:46] 2024-06-14 13:08:32,151 | INFO     | chi2: 16.118725646742522
[2024-06-14 09:08:46] 2024-06-14 13:08:32,151 | INFO     | model: linear, x: [1718318550.0, 1718318611.0, 1718318672.0, 1718318733.0, 1718318794.0, 1718318855.0, 1718318916.0, 1718318977.0, 1718319038.0, 1718319099.0, 1718
[2024-06-14 09:08:46] 2024-06-14 13:08:32,152 | INFO     | sum of square deviations: 188421927447.64777
[2024-06-14 09:08:46] 2024-06-14 13:08:32,157 | INFO     | sum of deviations: 1726611146144.5293
[2024-06-14 09:08:46] 2024-06-14 13:08:32,157 | INFO     | mean x: 1718344353.1050768
[2024-06-14 09:08:46] 2024-06-14 13:08:32,157 | INFO     | mean y: 2473414.0165289254
[2024-06-14 09:08:46] 2024-06-14 13:08:32,157 | INFO     | -- intersect: -15743637206.84038
[2024-06-14 09:08:46] 2024-06-14 13:08:32,157 | INFO     | intersect: -15743637206.84038
[2024-06-14 09:08:46] 2024-06-14 13:08:32,158 | INFO     | chi2: 16.1181472223267
[2024-06-14 09:08:46] 2024-06-14 13:08:32,158 | INFO     | current chi2=16.1181472223267 (change=0.0035885244807648486 %)
[2024-06-14 09:08:46] 2024-06-14 13:08:32,158 | INFO     | right removable region: 846
[2024-06-14 09:08:46] 2024-06-14 13:08:32,158 | INFO     | model: linear, x: [1718318855.0, 1718318916.0, 1718318977.0, 1718319038.0, 1718319099.0, 1718319160.0, 1718319221.0, 1718319282.0, 1718319343.0, 1718319404.0, 1718
[2024-06-14 09:08:46] 2024-06-14 13:08:32,158 | INFO     | sum of square deviations: 188421873157.64783
[2024-06-14 09:08:46] 2024-06-14 13:08:32,164 | INFO     | sum of deviations: 1482736004882.3267
[2024-06-14 09:08:46] 2024-06-14 13:08:32,164 | INFO     | mean x: 1718344658.1050768
[2024-06-14 09:08:46] 2024-06-14 13:08:32,164 | INFO     | mean y: 2485556.0637544272
[2024-06-14 09:08:46] 2024-06-14 13:08:32,164 | INFO     | -- intersect: -13519572423.04298
[2024-06-14 09:08:46] 2024-06-14 13:08:32,164 | INFO     | intersect: -13519572423.04298
[2024-06-14 09:08:46] 2024-06-14 13:08:32,165 | INFO     | chi2: 12.593365474262658
[2024-06-14 09:08:46] 2024-06-14 13:08:32,165 | INFO     | current chi2=12.593365474262658 (change=21.871208988486718 %)
[2024-06-14 09:08:46] 2024-06-14 13:08:32,165 | INFO     | left removable region: 10
[2024-06-14 09:08:46] 2024-06-14 13:08:32,165 | INFO     | model: linear, x: [1718319160.0, 1718319221.0, 1718319282.0, 1718319343.0, 1718319404.0, 1718319465.0, 1718319526.0, 1718319587.0, 1718319648.0, 1718319709.0, 1718
[2024-06-14 09:08:46] 2024-06-14 13:08:32,165 | INFO     | sum of square deviations: 181175740863.52505
[2024-06-14 09:08:46] 2024-06-14 13:08:32,171 | INFO     | sum of deviations: 1263780912366.4731
[2024-06-14 09:08:46] 2024-06-14 13:08:32,171 | INFO     | mean x: 1718344627.6064594
[2024-06-14 09:08:46] 2024-06-14 13:08:32,171 | INFO     | mean y: 2494635.5789473685
[2024-06-14 09:08:46] 2024-06-14 13:08:32,171 | INFO     | -- intersect: -11983719031.251518
[2024-06-14 09:08:46] 2024-06-14 13:08:32,171 | INFO     | intersect: -11983719031.251518
[2024-06-14 09:08:46] 2024-06-14 13:08:32,171 | INFO     | chi2: 10.400347006636236
[2024-06-14 09:08:46] 2024-06-14 13:08:32,171 | INFO     | -- intersect: -11983719031.251518
[2024-06-14 09:08:46] 2024-06-14 13:08:32,171 | INFO     | current memory leak: 6.98 B/s (using 836 data points, chi2=10.40)
[2024-06-14 09:08:46] 2024-06-14 13:08:32,172 | INFO     | ..............................
[2024-06-14 09:08:46] 2024-06-14 13:08:32,172 | INFO     | . Timing measurements:
[2024-06-14 09:08:46] 2024-06-14 13:08:32,172 | INFO     | . get job = 0 s
[2024-06-14 09:08:46] 2024-06-14 13:08:32,172 | INFO     | . initial setup = 1 s
[2024-06-14 09:08:46] 2024-06-14 13:08:32,172 | INFO     | . payload setup = 10 s
[2024-06-14 09:08:46] 2024-06-14 13:08:32,172 | INFO     | . stage-in = 0 s
[2024-06-14 09:08:46] 2024-06-14 13:08:32,172 | INFO     | . payload execution = 51956 s
[2024-06-14 09:08:46] 2024-06-14 13:08:32,172 | INFO     | . stage-out = 1 s
[2024-06-14 09:08:46] 2024-06-14 13:08:32,172 | INFO     | . log creation = 0 s
[2024-06-14 09:08:46] 2024-06-14 13:08:32,172 | INFO     | ..............................
[2024-06-14 09:08:46] 2024-06-14 13:08:32,239 | INFO     | 
[2024-06-14 09:08:46] 2024-06-14 13:08:32,239 | INFO     | job summary report
[2024-06-14 09:08:46] 2024-06-14 13:08:32,239 | INFO     | --------------------------------------------------
[2024-06-14 09:08:46] 2024-06-14 13:08:32,239 | INFO     | PanDA job id: 6229525972
[2024-06-14 09:08:46] 2024-06-14 13:08:32,239 | INFO     | task id: 38921013
[2024-06-14 09:08:46] 2024-06-14 13:08:32,239 | INFO     | errors: (none)
[2024-06-14 09:08:46] 2024-06-14 13:08:32,239 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-14 09:08:46] 2024-06-14 13:08:32,239 | INFO     | pilot state: finished 
[2024-06-14 09:08:46] 2024-06-14 13:08:32,239 | INFO     | transexitcode: 0
[2024-06-14 09:08:46] 2024-06-14 13:08:32,239 | INFO     | exeerrorcode: 0
[2024-06-14 09:08:46] 2024-06-14 13:08:32,239 | INFO     | exeerrordiag: 
[2024-06-14 09:08:46] 2024-06-14 13:08:32,239 | INFO     | exitcode: 0
[2024-06-14 09:08:46] 2024-06-14 13:08:32,239 | INFO     | exitmsg: OK
[2024-06-14 09:08:46] 2024-06-14 13:08:32,239 | INFO     | cpuconsumptiontime: 143318 s
[2024-06-14 09:08:46] 2024-06-14 13:08:32,239 | INFO     | nevents: 400
[2024-06-14 09:08:46] 2024-06-14 13:08:32,239 | INFO     | neventsw: 0
[2024-06-14 09:08:46] 2024-06-14 13:08:32,239 | INFO     | pid: 56966
[2024-06-14 09:08:46] 2024-06-14 13:08:32,240 | INFO     | pgrp: 56966
[2024-06-14 09:08:46] 2024-06-14 13:08:32,240 | INFO     | corecount: 8
[2024-06-14 09:08:46] 2024-06-14 13:08:32,240 | INFO     | event service: False
[2024-06-14 09:08:46] 2024-06-14 13:08:32,240 | INFO     | sizes: {0: 2379069, 1: 2379097, 9: 2379303, 11: 2379331, 51970: 2426885, 51973: 2435847, 51976: 2436031, 51982: 2436201}
[2024-06-14 09:08:46] 2024-06-14 13:08:32,240 | INFO     | --------------------------------------------------
[2024-06-14 09:08:46] 2024-06-14 13:08:32,240 | INFO     | 
[2024-06-14 09:08:46] 2024-06-14 13:08:32,240 | INFO     | executing command: ls -lF /tmp/boinchome/slots/10
[2024-06-14 09:08:46] 2024-06-14 13:08:32,253 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-14 09:08:46] 2024-06-14 13:08:32,253 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-14 09:08:46] 2024-06-14 13:08:32,253 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-14 09:08:46] 2024-06-14 13:08:32,253 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-14 09:08:46] 2024-06-14 13:08:32,253 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-14 09:08:46] 2024-06-14 13:08:32,253 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-14 09:08:46] 2024-06-14 13:08:32,253 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-14 09:08:46] 2024-06-14 13:08:32,253 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-14 09:08:46] 2024-06-14 13:08:32,253 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-14 09:08:46] 2024-06-14 13:08:32,253 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-14 09:08:46] 2024-06-14 13:08:32,253 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-14 09:08:46] 2024-06-14 13:08:32,253 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-14 09:08:46] 2024-06-14 13:08:32,253 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-14 09:08:46] 2024-06-14 13:08:32,253 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-14 09:08:46] 2024-06-14 13:08:32,253 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-14 09:08:46] 2024-06-14 13:08:32,254 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-14 09:08:46] 2024-06-14 13:08:32,254 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-14 09:08:46] 2024-06-14 13:08:32,254 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-14 09:08:46] 2024-06-14 13:08:32,254 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-14 09:08:46] 2024-06-14 13:08:32,254 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-14 09:08:46] 2024-06-14 13:08:32,254 | INFO     | job 6229525972 has completed (purged errors)
[2024-06-14 09:08:46] 2024-06-14 13:08:32,254 | INFO     | overall cleanup function is called
[2024-06-14 09:08:46] 2024-06-14 13:08:33,260 | INFO     | --- collectZombieJob: --- 10, [56966]
[2024-06-14 09:08:46] 2024-06-14 13:08:33,260 | INFO     | zombie collector waiting for pid 56966
[2024-06-14 09:08:46] 2024-06-14 13:08:33,260 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-14 09:08:46] 2024-06-14 13:08:34,265 | INFO     | collected zombie processes
[2024-06-14 09:08:46] 2024-06-14 13:08:34,265 | INFO     | will now attempt to kill all subprocesses of pid=56966
[2024-06-14 09:08:46] 2024-06-14 13:08:34,390 | INFO     | process IDs to be killed: [56966] (in reverse order)
[2024-06-14 09:08:46] 2024-06-14 13:08:34,456 | WARNING  | found no corresponding commands to process id(s)
[2024-06-14 09:08:46] 2024-06-14 13:08:34,456 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-14 09:08:46] 2024-06-14 13:08:34,466 | INFO     | did not find any defunct processes belonging to 56966
[2024-06-14 09:08:46] 2024-06-14 13:08:34,472 | INFO     | did not find any defunct processes belonging to 56966
[2024-06-14 09:08:46] 2024-06-14 13:08:34,472 | INFO     | ready for new job
[2024-06-14 09:08:46] 2024-06-14 13:08:34,472 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-14 09:08:46] 2024-06-14 13:08:34,475 | INFO     | *************************************
[2024-06-14 09:08:46] 2024-06-14 13:08:34,475 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-14 09:08:46] 2024-06-14 13:08:34,475 | INFO     | *************************************
[2024-06-14 09:08:46] 2024-06-14 13:08:34,475 | INFO     | 
[2024-06-14 09:08:46] 2024-06-14 13:08:34,478 | INFO     | architecture information:
[2024-06-14 09:08:46] 2024-06-14 13:08:34,478 | INFO     | executing command: cat /etc/os-release
[2024-06-14 09:08:46] 2024-06-14 13:08:34,491 | INFO     | cat /etc/os-release:
[2024-06-14 09:08:46] NAME="CentOS Linux"
[2024-06-14 09:08:46] VERSION="7 (Core)"
[2024-06-14 09:08:46] ID="centos"
[2024-06-14 09:08:46] ID_LIKE="rhel fedora"
[2024-06-14 09:08:46] VERSION_ID="7"
[2024-06-14 09:08:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-14 09:08:46] ANSI_COLOR="0;31"
[2024-06-14 09:08:46] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-14 09:08:46] HOME_URL="https://www.centos.org/"
[2024-06-14 09:08:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-14 09:08:46] 
[2024-06-14 09:08:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-14 09:08:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-14 09:08:46] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-14 09:08:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-14 09:08:46] 
[2024-06-14 09:08:46] 2024-06-14 13:08:34,491 | INFO     | *************************************
[2024-06-14 09:08:46] 2024-06-14 13:08:34,994 | INFO     | executing command: df -mP /tmp/boinchome/slots/10
[2024-06-14 09:08:46] 2024-06-14 13:08:35,008 | INFO     | sufficient remaining disk space (96788807680 B)
[2024-06-14 09:08:46] 2024-06-14 13:08:35,008 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-14 09:08:46] 2024-06-14 13:08:35,009 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-14 09:08:46] 2024-06-14 13:08:35,009 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-06-14 09:08:46] 2024-06-14 13:08:35,009 | INFO     | found 0 job(s) in 20 queues
[2024-06-14 09:08:46] 2024-06-14 13:08:35,009 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-14 09:08:46] 2024-06-14 13:08:35,009 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-14 09:08:46] 2024-06-14 13:08:35,266 | INFO     | all payload control threads have been joined
[2024-06-14 09:08:46] 2024-06-14 13:08:35,273 | INFO     | all data control threads have been joined
[2024-06-14 09:08:46] 2024-06-14 13:08:35,424 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-14 09:08:46] 2024-06-14 13:08:35,424 | INFO     | aborting loop
[2024-06-14 09:08:46] 2024-06-14 13:08:36,014 | INFO     | [job] retrieve thread has finished
[2024-06-14 09:08:46] 2024-06-14 13:08:36,270 | INFO     | [payload] control thread has finished
[2024-06-14 09:08:46] 2024-06-14 13:08:36,275 | INFO     | [data] control thread has finished
[2024-06-14 09:08:46] 2024-06-14 13:08:36,321 | INFO     | [payload] validate_post thread has finished
[2024-06-14 09:08:46] 2024-06-14 13:08:36,374 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-14 09:08:46] 2024-06-14 13:08:36,381 | INFO     | [payload] failed_post thread has finished
[2024-06-14 09:08:46] 2024-06-14 13:08:36,429 | INFO     | [job] job monitor thread has finished
[2024-06-14 09:08:46] 2024-06-14 13:08:36,692 | INFO     | all job control threads have been joined
[2024-06-14 09:08:46] 2024-06-14 13:08:36,838 | INFO     | [payload] execute_payloads thread has finished
[2024-06-14 09:08:46] 2024-06-14 13:08:36,952 | INFO     | [payload] validate_pre thread has finished
[2024-06-14 09:08:46] 2024-06-14 13:08:37,198 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-14 09:08:46] 2024-06-14 13:08:37,219 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-14 09:08:46] 2024-06-14 13:08:37,258 | INFO     | [data] copytool_in thread has finished
[2024-06-14 09:08:46] 2024-06-14 13:08:37,279 | INFO     | [job] create_data_payload thread has finished
[2024-06-14 09:08:46] 2024-06-14 13:08:37,408 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-14 09:08:46] 2024-06-14 13:08:37,510 | INFO     | [job] validate thread has finished
[2024-06-14 09:08:46] 2024-06-14 13:08:37,698 | INFO     | [job] control thread has finished
[2024-06-14 09:08:46] 2024-06-14 13:08:38,224 | INFO     | [job] queue monitor thread has finished
[2024-06-14 09:08:46] 2024-06-14 13:08:38,379 | INFO     | [data] copytool_out thread has finished
[2024-06-14 09:08:46] 2024-06-14 13:08:41,413 | INFO     | [data] queue_monitor thread has finished
[2024-06-14 09:08:46] 2024-06-14 13:08:41,655 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140587694978880)>', '<ExcThread(monitor, started 140586803775232)>']
[2024-06-14 09:08:46] 2024-06-14 13:08:42,044 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-14 09:08:46] 2024-06-14 13:08:42,044 | INFO     | [monitor] control thread has ended
[2024-06-14 09:08:46] 2024-06-14 13:08:46,680 | INFO     | all workflow threads have been joined
[2024-06-14 09:08:46] 2024-06-14 13:08:46,680 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-14 09:08:46] 2024-06-14 13:08:46,680 | INFO     | traces error code: 0
[2024-06-14 09:08:46] 2024-06-14 13:08:46,681 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-14 09:08:46] 2024-06-14 13:08:46,743 [wrapper] ==== pilot stdout END ====
[2024-06-14 09:08:46] 2024-06-14 13:08:46,745 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-14 09:08:46] 2024-06-14 13:08:46,748 [wrapper] pilotpid: 44396
[2024-06-14 09:08:46] 2024-06-14 13:08:46,750 [wrapper] Pilot exit status: 0
[2024-06-14 09:08:46] 2024-06-14 13:08:46,760 [wrapper] pandaids: 6229525972
[2024-06-14 09:08:46] 2024-06-14 13:08:46,833 [wrapper] cleanup supervisor_pilot 38190 44397
[2024-06-14 09:08:46] 2024-06-14 13:08:46,835 [wrapper] Test setup, not cleaning
[2024-06-14 09:08:46] 2024-06-14 13:08:46,837 [wrapper] ==== wrapper stdout END ====
[2024-06-14 09:08:46] 2024-06-14 13:08:46,839 [wrapper] ==== wrapper stderr END ====
[2024-06-14 09:08:46] 2024-06-14 13:08:46,843 [wrapper] apfmon messages muted
[2024-06-14 09:08:46]  *** Error codes and diagnostics ***
[2024-06-14 09:08:46]     "exeErrorCode": 0,
[2024-06-14 09:08:46]     "exeErrorDiag": "",
[2024-06-14 09:08:46]     "pilotErrorCode": 0,
[2024-06-14 09:08:46]     "pilotErrorDiag": "",
[2024-06-14 09:08:46]  *** Listing of results directory ***
[2024-06-14 09:08:46] total 881812
[2024-06-14 09:08:46] -rw-r--r-- 1 boincer umatlas    469766 Jun 13 13:05 pilot3.tar.gz
[2024-06-14 09:08:46] -rw-r--r-- 1 boincer umatlas      5654 Jun 13 13:44 queuedata.json
[2024-06-14 09:08:46] -rwx------ 1 boincer umatlas     32308 Jun 13 13:44 runpilot2-wrapper.sh
[2024-06-14 09:08:46] -rw-r--r-- 1 boincer umatlas       100 Jun 13 18:41 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-14 09:08:46] -rwxr-xr-x 1 boincer umatlas      7986 Jun 13 18:41 run_atlas
[2024-06-14 09:08:46] -rw-r--r-- 1 boincer umatlas       105 Jun 13 18:41 job.xml
[2024-06-14 09:08:46] -rw-r--r-- 2 boincer umatlas 541624244 Jun 13 18:41 EVNT.38776210._000761.pool.root.1
[2024-06-14 09:08:46] -rw-r--r-- 2 boincer umatlas     17537 Jun 13 18:41 start_atlas.sh
[2024-06-14 09:08:46] drwxrwx--x 2 boincer umatlas      4096 Jun 13 18:41 shared
[2024-06-14 09:08:46] -rw-r--r-- 2 boincer umatlas    482514 Jun 13 18:41 input.tar.gz
[2024-06-14 09:08:46] -rw-r--r-- 1 boincer umatlas         0 Jun 13 18:41 boinc_lockfile
[2024-06-14 09:08:46] -rw-r--r-- 1 boincer umatlas      2648 Jun 13 18:41 pandaJob.out
[2024-06-14 09:08:46] -rw------- 1 boincer umatlas       467 Jun 13 18:41 setup.sh.local
[2024-06-14 09:08:46] -rw------- 1 boincer umatlas   1025303 Jun 13 18:41 agis_schedconf.cvmfs.json
[2024-06-14 09:08:46] -rw------- 1 boincer umatlas   1316790 Jun 13 18:41 cric_ddmendpoints.json
[2024-06-14 09:08:46] drwx------ 4 boincer umatlas      4096 Jun 13 18:41 pilot3
[2024-06-14 09:08:46] -rw-r--r-- 1 boincer umatlas      6389 Jun 14 09:00 init_data.xml
[2024-06-14 09:08:46] -rw------- 1 boincer umatlas 345463951 Jun 14 09:07 HITS.38921013._030644.pool.root.1
[2024-06-14 09:08:46] -rw-r--r-- 1 boincer umatlas       533 Jun 14 09:07 boinc_task_state.xml
[2024-06-14 09:08:46] -rw------- 1 boincer umatlas        95 Jun 14 09:07 pilot_heartbeat.json
[2024-06-14 09:08:46] -rw------- 1 boincer umatlas      1073 Jun 14 09:08 memory_monitor_summary.json
[2024-06-14 09:08:46] -rw------- 1 boincer umatlas         0 Jun 14 09:08 agis_ddmendpoints.agis.ALL.json
[2024-06-14 09:08:46] -rw------- 1 boincer umatlas    812919 Jun 14 09:08 log.38921013._030644.job.log.tgz.1
[2024-06-14 09:08:46] -rw------- 1 boincer umatlas      7744 Jun 14 09:08 heartbeat.json
[2024-06-14 09:08:46] -rw-r--r-- 1 boincer umatlas      8192 Jun 14 09:08 boinc_mmap_file
[2024-06-14 09:08:46] -rw-r--r-- 1 boincer umatlas        29 Jun 14 09:08 wrapper_checkpoint.txt
[2024-06-14 09:08:46] -rw------- 1 boincer umatlas      4335 Jun 14 09:08 pilotlog.txt
[2024-06-14 09:08:46] -rw------- 1 boincer umatlas   5364132 Jun 14 09:08 log.38921013._030644.job.log.1
[2024-06-14 09:08:46] -rw------- 1 boincer umatlas       357 Jun 14 09:08 output.list
[2024-06-14 09:08:46] -rw-r--r-- 1 boincer umatlas       620 Jun 14 09:08 runtime_log
[2024-06-14 09:08:46] -rw------- 1 boincer umatlas   6195200 Jun 14 09:08 result.tar.gz
[2024-06-14 09:08:46] -rw-r--r-- 1 boincer umatlas     11418 Jun 14 09:08 runtime_log.err
[2024-06-14 09:08:46] -rw------- 1 boincer umatlas       652 Jun 14 09:08 joPODmGg3b5n7Olcko1bjSoqABFKDmABFKDmOtvXDmwZoKDmrysySm.diag
[2024-06-14 09:08:46] -rw-r--r-- 1 boincer umatlas     21866 Jun 14 09:08 stderr.txt
[2024-06-14 09:08:46] HITS file was successfully produced:
[2024-06-14 09:08:46] -rw------- 1 boincer umatlas 345463951 Jun 14 09:07 shared/HITS.pool.root.1
[2024-06-14 09:08:46]  *** Contents of shared directory: ***
[2024-06-14 09:08:46] total 872852
[2024-06-14 09:08:46] -rw-r--r-- 2 boincer umatlas 541624244 Jun 13 18:41 ATLAS.root_0
[2024-06-14 09:08:46] -rw-r--r-- 2 boincer umatlas     17537 Jun 13 18:41 start_atlas.sh
[2024-06-14 09:08:46] -rw-r--r-- 2 boincer umatlas    482514 Jun 13 18:41 input.tar.gz
[2024-06-14 09:08:46] -rw------- 1 boincer umatlas 345463951 Jun 14 09:07 HITS.pool.root.1
[2024-06-14 09:08:46] -rw------- 1 boincer umatlas   6195200 Jun 14 09:08 result.tar.gz
09:08:48 (39399): run_atlas exited; CPU time 139938.429211
09:08:48 (39399): called boinc_finish(0)

</stderr_txt>
]]>

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