Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:36:41 (1662): wrapper (7.7.26015): starting
18:36:41 (1662): wrapper: running run_atlas (--nthreads 8)
[2024-06-13 18:36:41] Arguments: --nthreads 8
[2024-06-13 18:36:41] Threads: 8
[2024-06-13 18:36:41] Checking for CVMFS
[2024-06-13 18:36:41] Probing /cvmfs/atlas.cern.ch... OK
[2024-06-13 18:36:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-06-13 18:36:41] Running cvmfs_config stat atlas.cern.ch
[2024-06-13 18:36:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-06-13 18:36:42] 2.11.2.0 84859 3008 154164 133848 1 133 16024846 18432000 13088 130560 0 18292801 99.452 18624290 52683 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2024-06-13 18:36:42] CVMFS is ok
[2024-06-13 18:36:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-13 18:36:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-13 18:36:42] Further information can be found at the LHC@home message board.
[2024-06-13 18:36:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-13 18:36:42] Checking for apptainer binary...
[2024-06-13 18:36:42] Using apptainer found in PATH at /usr/bin/apptainer
[2024-06-13 18:36:42] Running /usr/bin/apptainer --version
[2024-06-13 18:36:42] apptainer version 1.3.1-1.el7
[2024-06-13 18:36:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-13 18:36:47] c-212-2.aglt2.org
[2024-06-13 18:36:47] apptainer works
[2024-06-13 18:36:47] Set ATHENA_PROC_NUMBER=8
[2024-06-13 18:36:47] Set ATHENA_CORE_NUMBER=8
[2024-06-13 18:36:47] Starting ATLAS job with PandaID=6229525910
[2024-06-13 18:36:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-14 09:08:40]  *** The last 200 lines of the pilot log: ***
[2024-06-14 09:08:40] 2024-06-14 13:08:15,564 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-06-14 09:08:40] 2024-06-14 13:08:17,192 | INFO     | job 6229525910 has state=finished
[2024-06-14 09:08:40] 2024-06-14 13:08:17,192 | INFO     | preparing for final server update for job 6229525910 in state='finished'
[2024-06-14 09:08:40] 2024-06-14 13:08:17,193 | INFO     | this job has now completed (state=finished)
[2024-06-14 09:08:40] 2024-06-14 13:08:17,193 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-06-14 09:08:40] 2024-06-14 13:08:17,193 | INFO     | job 6229525910 has finished - writing final server update
[2024-06-14 09:08:40] 2024-06-14 13:08:17,193 | INFO     | total number of processed events: 400 (read)
[2024-06-14 09:08:40] 2024-06-14 13:08:17,196 | INFO     | executing command: lscpu
[2024-06-14 09:08:40] 2024-06-14 13:08:17,220 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-06-14 09:08:40] 2024-06-14 13:08:17,220 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-06-14 09:08:40] 2024-06-14 13:08:17,257 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-06-14 09:08:40] 2024-06-14 13:08:19,924 | INFO     | CPU arch script returned: x86-64-v3
[2024-06-14 09:08:40] 2024-06-14 13:08:19,924 | INFO     | using path: /tmp/boinchome/slots/11/PanDA_Pilot-6229525910/memory_monitor_summary.json (trf name=prmon)
[2024-06-14 09:08:40] 2024-06-14 13:08:19,925 | INFO     | extracted standard info from prmon json
[2024-06-14 09:08:40] 2024-06-14 13:08:19,925 | INFO     | extracted standard memory fields from prmon json
[2024-06-14 09:08:40] 2024-06-14 13:08:19,925 | WARNING  | GPU info not found in prmon json
[2024-06-14 09:08:40] 2024-06-14 13:08:19,925 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-06-14 09:08:40] 2024-06-14 13:08:19,925 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-06-14 09:08:40] 2024-06-14 13:08:19,940 | INFO     | fitting pss+swap vs Time
[2024-06-14 09:08:40] 2024-06-14 13:08:19,941 | INFO     | model: linear, x: [1718318289.0, 1718318350.0, 1718318411.0, 1718318472.0, 1718318533.0, 1718318594.0, 1718318655.0, 1718318716.0, 1718318777.0, 1718318838.0, 1718
[2024-06-14 09:08:40] 2024-06-14 13:08:19,941 | INFO     | sum of square deviations: 194491723047.6075
[2024-06-14 09:08:40] 2024-06-14 13:08:19,952 | INFO     | sum of deviations: 1637742090242.4675
[2024-06-14 09:08:40] 2024-06-14 13:08:19,952 | INFO     | mean x: 1718344366.620327
[2024-06-14 09:08:40] 2024-06-14 13:08:19,952 | INFO     | mean y: 2471726.61682243
[2024-06-14 09:08:40] 2024-06-14 13:08:19,952 | INFO     | -- intersect: -14467063792.158363
[2024-06-14 09:08:40] 2024-06-14 13:08:19,952 | INFO     | intersect: -14467063792.158363
[2024-06-14 09:08:40] 2024-06-14 13:08:19,953 | INFO     | chi2: 15.674507712264635
[2024-06-14 09:08:40] 2024-06-14 13:08:19,953 | INFO     | model: linear, x: [1718318289.0, 1718318350.0, 1718318411.0, 1718318472.0, 1718318533.0, 1718318594.0, 1718318655.0, 1718318716.0, 1718318777.0, 1718318838.0, 1718
[2024-06-14 09:08:40] 2024-06-14 13:08:19,953 | INFO     | sum of square deviations: 191103486282.5332
[2024-06-14 09:08:40] 2024-06-14 13:08:19,964 | INFO     | sum of deviations: 1627114138365.648
[2024-06-14 09:08:40] 2024-06-14 13:08:19,964 | INFO     | mean x: 1718344214.1210341
[2024-06-14 09:08:40] 2024-06-14 13:08:19,964 | INFO     | mean y: 2471248.265569918
[2024-06-14 09:08:40] 2024-06-14 13:08:19,964 | INFO     | -- intersect: -14628042405.690157
[2024-06-14 09:08:40] 2024-06-14 13:08:19,964 | INFO     | intersect: -14628042405.690157
[2024-06-14 09:08:40] 2024-06-14 13:08:19,965 | INFO     | chi2: 15.6742379151918
[2024-06-14 09:08:40] 2024-06-14 13:08:19,965 | INFO     | current chi2=15.6742379151918 (change=0.0017212475044717495 %)
[2024-06-14 09:08:40] 2024-06-14 13:08:19,965 | INFO     | right removable region: 850
[2024-06-14 09:08:40] 2024-06-14 13:08:19,966 | INFO     | model: linear, x: [1718318594.0, 1718318655.0, 1718318716.0, 1718318777.0, 1718318838.0, 1718318899.0, 1718318960.0, 1718319021.0, 1718319082.0, 1718319143.0, 1718
[2024-06-14 09:08:40] 2024-06-14 13:08:19,966 | INFO     | sum of square deviations: 191103423452.53317
[2024-06-14 09:08:40] 2024-06-14 13:08:19,976 | INFO     | sum of deviations: 1389884819119.2861
[2024-06-14 09:08:40] 2024-06-14 13:08:19,976 | INFO     | mean x: 1718344519.1210341
[2024-06-14 09:08:40] 2024-06-14 13:08:19,977 | INFO     | mean y: 2482875.3078730903
[2024-06-14 09:08:40] 2024-06-14 13:08:19,977 | INFO     | -- intersect: -12494943481.558876
[2024-06-14 09:08:40] 2024-06-14 13:08:19,977 | INFO     | intersect: -12494943481.558876
[2024-06-14 09:08:40] 2024-06-14 13:08:19,977 | INFO     | chi2: 12.364245390428952
[2024-06-14 09:08:40] 2024-06-14 13:08:19,977 | INFO     | current chi2=12.364245390428952 (change=21.118764190887756 %)
[2024-06-14 09:08:40] 2024-06-14 13:08:19,978 | INFO     | left removable region: 10
[2024-06-14 09:08:40] 2024-06-14 13:08:19,978 | INFO     | model: linear, x: [1718318899.0, 1718318960.0, 1718319021.0, 1718319082.0, 1718319143.0, 1718319204.0, 1718319265.0, 1718319326.0, 1718319387.0, 1718319448.0, 1718
[2024-06-14 09:08:40] 2024-06-14 13:08:19,978 | INFO     | sum of square deviations: 183788241415.37042
[2024-06-14 09:08:40] 2024-06-14 13:08:19,988 | INFO     | sum of deviations: 1178122011827.1936
[2024-06-14 09:08:40] 2024-06-14 13:08:19,989 | INFO     | mean x: 1718344488.6226192
[2024-06-14 09:08:40] 2024-06-14 13:08:19,989 | INFO     | mean y: 2491654.2845238093
[2024-06-14 09:08:40] 2024-06-14 13:08:19,989 | INFO     | -- intersect: -11012464745.308872
[2024-06-14 09:08:40] 2024-06-14 13:08:19,989 | INFO     | intersect: -11012464745.308872
[2024-06-14 09:08:40] 2024-06-14 13:08:19,990 | INFO     | chi2: 10.304369865936389
[2024-06-14 09:08:40] 2024-06-14 13:08:19,990 | INFO     | -- intersect: -11012464745.308872
[2024-06-14 09:08:40] 2024-06-14 13:08:19,990 | INFO     | current memory leak: 6.41 B/s (using 840 data points, chi2=10.30)
[2024-06-14 09:08:40] 2024-06-14 13:08:19,991 | INFO     | ..............................
[2024-06-14 09:08:40] 2024-06-14 13:08:19,991 | INFO     | . Timing measurements:
[2024-06-14 09:08:40] 2024-06-14 13:08:19,991 | INFO     | . get job = 0 s
[2024-06-14 09:08:40] 2024-06-14 13:08:19,991 | INFO     | . initial setup = 2 s
[2024-06-14 09:08:40] 2024-06-14 13:08:19,991 | INFO     | . payload setup = 13 s
[2024-06-14 09:08:40] 2024-06-14 13:08:19,991 | INFO     | . stage-in = 0 s
[2024-06-14 09:08:40] 2024-06-14 13:08:19,991 | INFO     | . payload execution = 52210 s
[2024-06-14 09:08:40] 2024-06-14 13:08:19,991 | INFO     | . stage-out = 1 s
[2024-06-14 09:08:40] 2024-06-14 13:08:19,991 | INFO     | . log creation = 0 s
[2024-06-14 09:08:40] 2024-06-14 13:08:19,991 | INFO     | ..............................
[2024-06-14 09:08:40] 2024-06-14 13:08:20,042 | INFO     | 
[2024-06-14 09:08:40] 2024-06-14 13:08:20,043 | WARNING  | process 15502 is no longer using CPU - aborting
[2024-06-14 09:08:40] 2024-06-14 13:08:20,043 | INFO     | job summary report
[2024-06-14 09:08:40] 2024-06-14 13:08:20,043 | INFO     | aborting job monitoring since job object (job id=6229525910) has expired
[2024-06-14 09:08:40] 2024-06-14 13:08:20,043 | INFO     | --------------------------------------------------
[2024-06-14 09:08:40] 2024-06-14 13:08:20,043 | INFO     | PanDA job id: 6229525910
[2024-06-14 09:08:40] 2024-06-14 13:08:20,043 | INFO     | task id: 38921013
[2024-06-14 09:08:40] 2024-06-14 13:08:20,043 | INFO     | errors: (none)
[2024-06-14 09:08:40] 2024-06-14 13:08:20,043 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-14 09:08:40] 2024-06-14 13:08:20,044 | INFO     | pilot state: finished 
[2024-06-14 09:08:40] 2024-06-14 13:08:20,044 | INFO     | transexitcode: 0
[2024-06-14 09:08:40] 2024-06-14 13:08:20,044 | INFO     | exeerrorcode: 0
[2024-06-14 09:08:40] 2024-06-14 13:08:20,044 | INFO     | exeerrordiag: 
[2024-06-14 09:08:40] 2024-06-14 13:08:20,044 | INFO     | exitcode: 0
[2024-06-14 09:08:40] 2024-06-14 13:08:20,044 | INFO     | exitmsg: OK
[2024-06-14 09:08:40] 2024-06-14 13:08:20,044 | INFO     | cpuconsumptiontime: 143901 s
[2024-06-14 09:08:40] 2024-06-14 13:08:20,044 | INFO     | nevents: 400
[2024-06-14 09:08:40] 2024-06-14 13:08:20,044 | INFO     | neventsw: 0
[2024-06-14 09:08:40] 2024-06-14 13:08:20,044 | INFO     | pid: 15502
[2024-06-14 09:08:40] 2024-06-14 13:08:20,044 | INFO     | pgrp: 15502
[2024-06-14 09:08:40] 2024-06-14 13:08:20,044 | INFO     | corecount: 8
[2024-06-14 09:08:40] 2024-06-14 13:08:20,044 | INFO     | event service: False
[2024-06-14 09:08:40] 2024-06-14 13:08:20,044 | INFO     | sizes: {0: 2379068, 1: 2379068, 9: 2379302, 11: 2379330, 52228: 2426976, 52230: 2436122, 52235: 2436236}
[2024-06-14 09:08:40] 2024-06-14 13:08:20,044 | INFO     | --------------------------------------------------
[2024-06-14 09:08:40] 2024-06-14 13:08:20,044 | INFO     | 
[2024-06-14 09:08:40] 2024-06-14 13:08:20,044 | INFO     | executing command: ls -lF /tmp/boinchome/slots/11
[2024-06-14 09:08:40] 2024-06-14 13:08:20,058 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-14 09:08:40] 2024-06-14 13:08:20,059 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-14 09:08:40] 2024-06-14 13:08:20,059 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-14 09:08:40] 2024-06-14 13:08:20,059 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-14 09:08:40] 2024-06-14 13:08:20,059 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-14 09:08:40] 2024-06-14 13:08:20,059 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-14 09:08:40] 2024-06-14 13:08:20,059 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-14 09:08:40] 2024-06-14 13:08:20,059 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-14 09:08:40] 2024-06-14 13:08:20,059 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-14 09:08:40] 2024-06-14 13:08:20,059 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-14 09:08:40] 2024-06-14 13:08:20,059 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-14 09:08:40] 2024-06-14 13:08:20,059 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-14 09:08:40] 2024-06-14 13:08:20,059 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-14 09:08:40] 2024-06-14 13:08:20,059 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-14 09:08:40] 2024-06-14 13:08:20,059 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-14 09:08:40] 2024-06-14 13:08:20,059 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-14 09:08:40] 2024-06-14 13:08:20,059 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-14 09:08:40] 2024-06-14 13:08:20,059 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-14 09:08:40] 2024-06-14 13:08:20,059 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-14 09:08:40] 2024-06-14 13:08:20,060 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-14 09:08:40] 2024-06-14 13:08:20,060 | INFO     | job 6229525910 has completed (purged errors)
[2024-06-14 09:08:40] 2024-06-14 13:08:20,060 | INFO     | overall cleanup function is called
[2024-06-14 09:08:40] 2024-06-14 13:08:21,067 | INFO     | --- collectZombieJob: --- 10, [15502]
[2024-06-14 09:08:40] 2024-06-14 13:08:21,067 | INFO     | zombie collector waiting for pid 15502
[2024-06-14 09:08:40] 2024-06-14 13:08:21,067 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-14 09:08:40] 2024-06-14 13:08:22,072 | INFO     | collected zombie processes
[2024-06-14 09:08:40] 2024-06-14 13:08:22,072 | INFO     | will now attempt to kill all subprocesses of pid=15502
[2024-06-14 09:08:40] 2024-06-14 13:08:22,197 | INFO     | process IDs to be killed: [15502] (in reverse order)
[2024-06-14 09:08:40] 2024-06-14 13:08:22,296 | WARNING  | found no corresponding commands to process id(s)
[2024-06-14 09:08:40] 2024-06-14 13:08:22,296 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-14 09:08:40] 2024-06-14 13:08:22,304 | INFO     | did not find any defunct processes belonging to 15502
[2024-06-14 09:08:40] 2024-06-14 13:08:22,310 | INFO     | did not find any defunct processes belonging to 15502
[2024-06-14 09:08:40] 2024-06-14 13:08:22,310 | INFO     | ready for new job
[2024-06-14 09:08:40] 2024-06-14 13:08:22,310 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-14 09:08:40] 2024-06-14 13:08:22,312 | INFO     | *************************************
[2024-06-14 09:08:40] 2024-06-14 13:08:22,312 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-14 09:08:40] 2024-06-14 13:08:22,312 | INFO     | *************************************
[2024-06-14 09:08:40] 2024-06-14 13:08:22,312 | INFO     | 
[2024-06-14 09:08:40] 2024-06-14 13:08:22,315 | INFO     | architecture information:
[2024-06-14 09:08:40] 2024-06-14 13:08:22,315 | INFO     | executing command: cat /etc/os-release
[2024-06-14 09:08:40] 2024-06-14 13:08:22,326 | INFO     | cat /etc/os-release:
[2024-06-14 09:08:40] NAME="CentOS Linux"
[2024-06-14 09:08:40] VERSION="7 (Core)"
[2024-06-14 09:08:40] ID="centos"
[2024-06-14 09:08:40] ID_LIKE="rhel fedora"
[2024-06-14 09:08:40] VERSION_ID="7"
[2024-06-14 09:08:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-14 09:08:40] ANSI_COLOR="0;31"
[2024-06-14 09:08:40] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-14 09:08:40] HOME_URL="https://www.centos.org/"
[2024-06-14 09:08:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-14 09:08:40] 
[2024-06-14 09:08:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-14 09:08:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-14 09:08:40] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-14 09:08:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-14 09:08:40] 
[2024-06-14 09:08:40] 2024-06-14 13:08:22,326 | INFO     | *************************************
[2024-06-14 09:08:40] 2024-06-14 13:08:22,828 | INFO     | executing command: df -mP /tmp/boinchome/slots/11
[2024-06-14 09:08:40] 2024-06-14 13:08:22,844 | INFO     | sufficient remaining disk space (96784613376 B)
[2024-06-14 09:08:40] 2024-06-14 13:08:22,844 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-14 09:08:40] 2024-06-14 13:08:22,844 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-14 09:08:40] 2024-06-14 13:08:23,184 | INFO     | all payload control threads have been joined
[2024-06-14 09:08:40] 2024-06-14 13:08:23,427 | INFO     | all data control threads have been joined
[2024-06-14 09:08:40] 2024-06-14 13:08:23,517 | INFO     | found 0 job(s) in 20 queues
[2024-06-14 09:08:40] 2024-06-14 13:08:23,517 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-14 09:08:40] 2024-06-14 13:08:23,517 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-14 09:08:40] 2024-06-14 13:08:23,551 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-14 09:08:40] 2024-06-14 13:08:23,552 | INFO     | aborting loop
[2024-06-14 09:08:40] 2024-06-14 13:08:23,579 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-14 09:08:40] 2024-06-14 13:08:23,849 | INFO     | [job] retrieve thread has finished
[2024-06-14 09:08:40] 2024-06-14 13:08:23,958 | INFO     | all job control threads have been joined
[2024-06-14 09:08:40] 2024-06-14 13:08:24,145 | INFO     | [job] create_data_payload thread has finished
[2024-06-14 09:08:40] 2024-06-14 13:08:24,189 | INFO     | [payload] control thread has finished
[2024-06-14 09:08:40] 2024-06-14 13:08:24,333 | INFO     | [payload] validate_pre thread has finished
[2024-06-14 09:08:40] 2024-06-14 13:08:24,432 | INFO     | [data] control thread has finished
[2024-06-14 09:08:40] 2024-06-14 13:08:24,511 | INFO     | [job] validate thread has finished
[2024-06-14 09:08:40] 2024-06-14 13:08:24,556 | INFO     | [job] job monitor thread has finished
[2024-06-14 09:08:40] 2024-06-14 13:08:24,577 | INFO     | [payload] execute_payloads thread has finished
[2024-06-14 09:08:40] 2024-06-14 13:08:24,705 | INFO     | [data] copytool_in thread has finished
[2024-06-14 09:08:40] 2024-06-14 13:08:24,959 | INFO     | [job] control thread has finished
[2024-06-14 09:08:40] 2024-06-14 13:08:25,052 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-14 09:08:40] 2024-06-14 13:08:25,312 | INFO     | [payload] failed_post thread has finished
[2024-06-14 09:08:40] 2024-06-14 13:08:25,326 | INFO     | [payload] validate_post thread has finished
[2024-06-14 09:08:40] 2024-06-14 13:08:25,584 | INFO     | [data] copytool_out thread has finished
[2024-06-14 09:08:40] 2024-06-14 13:08:26,057 | INFO     | [job] queue monitor thread has finished
[2024-06-14 09:08:40] 2024-06-14 13:08:26,110 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-14 09:08:40] 2024-06-14 13:08:30,116 | INFO     | [data] queue_monitor thread has finished
[2024-06-14 09:08:40] 2024-06-14 13:08:33,171 | INFO     | job.realtimelogging is not enabled
[2024-06-14 09:08:40] 2024-06-14 13:08:34,176 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-14 09:08:40] 2024-06-14 13:08:35,015 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139914251315008)>', '<ExcThread(monitor, started 139913366324992)>']
[2024-06-14 09:08:40] 2024-06-14 13:08:35,577 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-14 09:08:40] 2024-06-14 13:08:35,577 | INFO     | [monitor] control thread has ended
[2024-06-14 09:08:40] 2024-06-14 13:08:40,041 | INFO     | all workflow threads have been joined
[2024-06-14 09:08:40] 2024-06-14 13:08:40,041 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-14 09:08:40] 2024-06-14 13:08:40,042 | INFO     | traces error code: 0
[2024-06-14 09:08:40] 2024-06-14 13:08:40,042 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-14 09:08:40] 2024-06-14 13:08:40,141 [wrapper] ==== pilot stdout END ====
[2024-06-14 09:08:40] 2024-06-14 13:08:40,144 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-14 09:08:40] 2024-06-14 13:08:40,146 [wrapper] pilotpid: 6977
[2024-06-14 09:08:40] 2024-06-14 13:08:40,148 [wrapper] Pilot exit status: 0
[2024-06-14 09:08:40] 2024-06-14 13:08:40,157 [wrapper] pandaids: 6229525910
[2024-06-14 09:08:40] 2024-06-14 13:08:40,214 [wrapper] cleanup supervisor_pilot 92006 6978
[2024-06-14 09:08:40] 2024-06-14 13:08:40,216 [wrapper] Test setup, not cleaning
[2024-06-14 09:08:40] 2024-06-14 13:08:40,220 [wrapper] ==== wrapper stdout END ====
[2024-06-14 09:08:40] 2024-06-14 13:08:40,222 [wrapper] ==== wrapper stderr END ====
[2024-06-14 09:08:40] 2024-06-14 13:08:40,226 [wrapper] apfmon messages muted
[2024-06-14 09:08:40]  *** Error codes and diagnostics ***
[2024-06-14 09:08:40]     "exeErrorCode": 0,
[2024-06-14 09:08:40]     "exeErrorDiag": "",
[2024-06-14 09:08:40]     "pilotErrorCode": 0,
[2024-06-14 09:08:40]     "pilotErrorDiag": "",
[2024-06-14 09:08:40]  *** Listing of results directory ***
[2024-06-14 09:08:40] total 879400
[2024-06-14 09:08:40] -rw-r--r-- 1 boincer umatlas    469766 Jun 13 13:05 pilot3.tar.gz
[2024-06-14 09:08:40] -rw-r--r-- 1 boincer umatlas      5654 Jun 13 13:32 queuedata.json
[2024-06-14 09:08:40] -rwx------ 1 boincer umatlas     32308 Jun 13 13:34 runpilot2-wrapper.sh
[2024-06-14 09:08:40] -rw-r--r-- 1 boincer umatlas       100 Jun 13 18:36 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-14 09:08:40] -rwxr-xr-x 1 boincer umatlas      7986 Jun 13 18:36 run_atlas
[2024-06-14 09:08:40] -rw-r--r-- 1 boincer umatlas       105 Jun 13 18:36 job.xml
[2024-06-14 09:08:40] -rw-r--r-- 2 boincer umatlas 543669521 Jun 13 18:36 EVNT.38776210._000759.pool.root.1
[2024-06-14 09:08:40] -rw-r--r-- 2 boincer umatlas     17537 Jun 13 18:36 start_atlas.sh
[2024-06-14 09:08:40] drwxrwx--x 2 boincer umatlas      4096 Jun 13 18:36 shared
[2024-06-14 09:08:40] -rw-r--r-- 2 boincer umatlas    482524 Jun 13 18:36 input.tar.gz
[2024-06-14 09:08:40] -rw-r--r-- 1 boincer umatlas         0 Jun 13 18:36 boinc_lockfile
[2024-06-14 09:08:40] -rw-r--r-- 1 boincer umatlas      2647 Jun 13 18:36 pandaJob.out
[2024-06-14 09:08:40] -rw------- 1 boincer umatlas       467 Jun 13 18:36 setup.sh.local
[2024-06-14 09:08:40] -rw------- 1 boincer umatlas   1025303 Jun 13 18:37 agis_schedconf.cvmfs.json
[2024-06-14 09:08:40] -rw------- 1 boincer umatlas   1316790 Jun 13 18:37 cric_ddmendpoints.json
[2024-06-14 09:08:40] drwx------ 4 boincer umatlas      4096 Jun 13 18:37 pilot3
[2024-06-14 09:08:40] -rw-r--r-- 1 boincer umatlas      6389 Jun 14 09:00 init_data.xml
[2024-06-14 09:08:40] -rw------- 1 boincer umatlas        95 Jun 14 09:07 pilot_heartbeat.json
[2024-06-14 09:08:40] -rw------- 1 boincer umatlas 340914360 Jun 14 09:07 HITS.38921013._030593.pool.root.1
[2024-06-14 09:08:40] -rw-r--r-- 1 boincer umatlas       533 Jun 14 09:07 boinc_task_state.xml
[2024-06-14 09:08:40] -rw------- 1 boincer umatlas      1076 Jun 14 09:08 memory_monitor_summary.json
[2024-06-14 09:08:40] -rw------- 1 boincer umatlas         0 Jun 14 09:08 agis_ddmendpoints.agis.ALL.json
[2024-06-14 09:08:40] -rw------- 1 boincer umatlas    810568 Jun 14 09:08 log.38921013._030593.job.log.tgz.1
[2024-06-14 09:08:40] -rw------- 1 boincer umatlas      7743 Jun 14 09:08 heartbeat.json
[2024-06-14 09:08:40] -rw-r--r-- 1 boincer umatlas        29 Jun 14 09:08 wrapper_checkpoint.txt
[2024-06-14 09:08:40] -rw-r--r-- 1 boincer umatlas      8192 Jun 14 09:08 boinc_mmap_file
[2024-06-14 09:08:40] -rw------- 1 boincer umatlas      4284 Jun 14 09:08 pilotlog.txt
[2024-06-14 09:08:40] -rw------- 1 boincer umatlas   5381732 Jun 14 09:08 log.38921013._030593.job.log.1
[2024-06-14 09:08:40] -rw------- 1 boincer umatlas       357 Jun 14 09:08 output.list
[2024-06-14 09:08:40] -rw-r--r-- 1 boincer umatlas       620 Jun 14 09:08 runtime_log
[2024-06-14 09:08:40] -rw------- 1 boincer umatlas   6215680 Jun 14 09:08 result.tar.gz
[2024-06-14 09:08:40] -rw-r--r-- 1 boincer umatlas     11418 Jun 14 09:08 runtime_log.err
[2024-06-14 09:08:40] -rw------- 1 boincer umatlas       653 Jun 14 09:08 pq7LDmCW3b5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDms4dKDmHKyVGo.diag
[2024-06-14 09:08:40] -rw-r--r-- 1 boincer umatlas     21744 Jun 14 09:08 stderr.txt
[2024-06-14 09:08:40] HITS file was successfully produced:
[2024-06-14 09:08:40] -rw------- 1 boincer umatlas 340914360 Jun 14 09:07 shared/HITS.pool.root.1
[2024-06-14 09:08:40]  *** Contents of shared directory: ***
[2024-06-14 09:08:40] total 870428
[2024-06-14 09:08:40] -rw-r--r-- 2 boincer umatlas 543669521 Jun 13 18:36 ATLAS.root_0
[2024-06-14 09:08:40] -rw-r--r-- 2 boincer umatlas     17537 Jun 13 18:36 start_atlas.sh
[2024-06-14 09:08:40] -rw-r--r-- 2 boincer umatlas    482524 Jun 13 18:36 input.tar.gz
[2024-06-14 09:08:40] -rw------- 1 boincer umatlas 340914360 Jun 14 09:07 HITS.pool.root.1
[2024-06-14 09:08:40] -rw------- 1 boincer umatlas   6215680 Jun 14 09:08 result.tar.gz
09:08:41 (1662): run_atlas exited; CPU time 140639.576047
09:08:41 (1662): called boinc_finish(0)

</stderr_txt>
]]>

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