Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-14 16:10:31 (1134358): Detected: vboxwrapper 26206
2024-06-14 16:10:31 (1134358): Detected: BOINC client v7.24.1
2024-06-14 16:10:31 (1134358): Detected: VirtualBox VboxManage Interface (Version: 7.0.18)
2024-06-14 16:10:31 (1134358): Successfully copied 'init_data.xml' to the shared directory.
2024-06-14 16:10:31 (1134358): Create VM. (boinc_6b07b54705520038, slot#0)
2024-06-14 16:10:31 (1134358): Setting Memory Size for VM. (4600MB)
2024-06-14 16:10:31 (1134358): Setting CPU Count for VM. (6)
2024-06-14 16:10:31 (1134358): Setting Chipset Options for VM.
2024-06-14 16:10:31 (1134358): Setting Graphics Controller Options for VM.
2024-06-14 16:10:31 (1134358): Setting Boot Options for VM.
2024-06-14 16:10:31 (1134358): Setting Network Configuration for NAT.
2024-06-14 16:10:31 (1134358): Enabling VM Network Access.
2024-06-14 16:10:31 (1134358): Disabling USB Support for VM.
2024-06-14 16:10:31 (1134358): Disabling COM Port Support for VM.
2024-06-14 16:10:31 (1134358): Disabling LPT Port Support for VM.
2024-06-14 16:10:31 (1134358): Disabling Audio Support for VM.
2024-06-14 16:10:31 (1134358): Disabling Clipboard Support for VM.
2024-06-14 16:10:31 (1134358): Disabling Drag and Drop Support for VM.
2024-06-14 16:10:31 (1134358): Adding storage controller(s) to VM.
2024-06-14 16:10:32 (1134358): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-14 16:10:33 (1134358): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-14 16:10:33 (1134358): forwarding host port 40113 to guest port 80
2024-06-14 16:10:33 (1134358): Enabling remote desktop for VM.
2024-06-14 16:10:33 (1134358): Required extension pack not installed, remote desktop not enabled.
2024-06-14 16:10:33 (1134358): Enabling shared directory for VM.
2024-06-14 16:10:33 (1134358): Starting VM using VBoxManage interface. (boinc_6b07b54705520038, slot#0)
2024-06-14 16:10:34 (1134358): Successfully started VM. (PID = '1134622')
2024-06-14 16:10:34 (1134358): Reporting VM Process ID to BOINC.
2024-06-14 16:10:34 (1134358): Guest Log: BIOS: VirtualBox 7.0.18
2024-06-14 16:10:34 (1134358): Guest Log: CPUID EDX: 0x178bfbff
2024-06-14 16:10:34 (1134358): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-14 16:10:34 (1134358): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-14 16:10:34 (1134358): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-14 16:10:34 (1134358): Detected: Web Application Enabled (http://localhost:40113)
2024-06-14 16:10:34 (1134358): Preference change detected
2024-06-14 16:10:34 (1134358): Setting CPU throttle for VM. (50%)
2024-06-14 16:10:34 (1134358): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-14 16:10:36 (1134358): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-14 16:10:36 (1134358): Guest Log: BIOS: Booting from Hard Disk...
2024-06-14 16:10:39 (1134358): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-14 16:10:39 (1134358): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-14 16:10:39 (1134358): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-14 16:10:39 (1134358): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-14 16:10:39 (1134358): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-14 16:10:39 (1134358): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-14 16:10:39 (1134358): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-14 16:10:39 (1134358): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-14 16:10:39 (1134358): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-14 16:10:39 (1134358): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-14 16:10:39 (1134358): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-14 16:10:39 (1134358): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-14 16:10:39 (1134358): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-14 16:10:39 (1134358): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-14 16:10:39 (1134358): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-14 16:10:39 (1134358): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-14 16:10:39 (1134358): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-14 16:10:39 (1134358): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-14 16:10:39 (1134358): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-14 16:10:39 (1134358): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-14 16:10:39 (1134358): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-14 16:10:39 (1134358): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-14 16:10:39 (1134358): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-14 16:10:39 (1134358): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-14 16:10:39 (1134358): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-14 16:10:39 (1134358): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-14 16:10:39 (1134358): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-14 16:10:39 (1134358): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-14 16:10:39 (1134358): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-14 16:10:39 (1134358): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-14 16:10:39 (1134358): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-14 16:10:39 (1134358): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-14 16:10:46 (1134358): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-14 16:10:46 (1134358): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-14 16:10:51 (1134358): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-14 16:10:51 (1134358): Guest Log: 00:00:00.000075 main     Log opened 2024-06-14T14:10:49.325258000Z
2024-06-14 16:10:51 (1134358): Guest Log: 00:00:00.000135 main     OS Product: Linux
2024-06-14 16:10:51 (1134358): Guest Log: 00:00:00.000152 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-14 16:10:51 (1134358): Guest Log: 00:00:00.000170 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-14 16:10:51 (1134358): Guest Log: 00:00:00.000179 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-14 16:10:51 (1134358): Guest Log: 00:00:00.000180 main     Process ID: 1325
2024-06-14 16:10:51 (1134358): Guest Log: 00:00:00.000180 main     Package type: LINUX_64BITS_GENERIC
2024-06-14 16:10:51 (1134358): Guest Log: 00:00:00.000541 main     5.2.32 r132073 started. Verbose level = 0
2024-06-14 16:10:51 (1134358): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-14 16:10:51 (1134358): Guest Log: [INFO] Mounting shared directory
2024-06-14 16:10:51 (1134358): Guest Log: [INFO] Checking for init_data.xml
2024-06-14 16:10:52 (1134358): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-14 16:10:52 (1134358): Guest Log: [INFO] Detected branch: prod
2024-06-14 16:10:52 (1134358): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-14 16:10:52 (1134358): Guest Log: Copying input files
2024-06-14 16:10:55 (1134358): Guest Log: Copied input files into RunAtlas.
2024-06-14 16:10:55 (1134358): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-06-14 16:10:55 (1134358): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-06-14 16:10:55 (1134358): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-06-14 16:10:55 (1134358): Guest Log: Further information can be found at the LHC@home message board.
2024-06-14 16:11:02 (1134358): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-14 16:11:02 (1134358): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-14 16:11:02 (1134358): Guest Log: 2.6.3.0 1600 0 32272 133871 4 1 3117205 4096000 0 65024 0 0 n/a 1 8 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
2024-06-14 16:11:02 (1134358): Guest Log: copied the webapp to /var/www
2024-06-14 16:11:02 (1134358): Guest Log: ATHENA_PROC_NUMBER=6
2024-06-14 16:11:02 (1134358): Guest Log: ATHENA_CORE_NUMBER=6
2024-06-14 16:11:02 (1134358): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-14 16:11:02 (1134358): Guest Log:  *** Starting ATLAS job. (PandaID=6229457079 taskID=38921013) ***
2024-06-14 17:49:34 (1134358): Status Report: Elapsed Time: '6000.000000'
2024-06-14 17:49:34 (1134358): Status Report: CPU Time: '14339.760000'
2024-06-14 19:28:35 (1134358): Status Report: Elapsed Time: '12000.000000'
2024-06-14 19:28:35 (1134358): Status Report: CPU Time: '31348.870000'
2024-06-14 21:07:35 (1134358): Status Report: Elapsed Time: '18000.000000'
2024-06-14 21:07:35 (1134358): Status Report: CPU Time: '48348.490000'
2024-06-14 22:46:35 (1134358): Status Report: Elapsed Time: '24000.000000'
2024-06-14 22:46:35 (1134358): Status Report: CPU Time: '65364.060000'
2024-06-14 23:24:20 (1134358): Guest Log:  *** Job finished ***
2024-06-14 23:24:20 (1134358): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-14 23:24:20 (1134358): Guest Log: 2024-06-14 21:24:11,412 | INFO     | [job] queue monitor thread has finished
2024-06-14 23:24:20 (1134358): Guest Log: 2024-06-14 21:24:11,513 | INFO     | [data] copytool_out thread has finished
2024-06-14 23:24:20 (1134358): Guest Log: 2024-06-14 21:24:13,520 | INFO     | [data] queue_monitor thread has finished
2024-06-14 23:24:20 (1134358): Guest Log: 2024-06-14 21:24:15,077 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140534625466176)>', '<ExcThread(monitor, started 140534064600832)>']
2024-06-14 23:24:20 (1134358): Guest Log: 2024-06-14 21:24:15,426 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-14 23:24:20 (1134358): Guest Log: 2024-06-14 21:24:15,426 | INFO     | [monitor] control thread has ended
2024-06-14 23:24:20 (1134358): Guest Log: 2024-06-14 21:24:20,085 | INFO     | all workflow threads have been joined
2024-06-14 23:24:20 (1134358): Guest Log: 2024-06-14 21:24:20,085 | INFO     | end of generic workflow (traces error code: 0)
2024-06-14 23:24:20 (1134358): Guest Log: 2024-06-14 21:24:20,085 | INFO     | traces error code: 0
2024-06-14 23:24:20 (1134358): Guest Log: 2024-06-14 21:24:20,085 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-14 23:24:20 (1134358): Guest Log: 2024-06-14 21:24:20,129 [wrapper] ==== pilot stdout END ====
2024-06-14 23:24:20 (1134358): Guest Log: 2024-06-14 21:24:20,131 [wrapper] ==== wrapper stdout RESUME ====
2024-06-14 23:24:20 (1134358): Guest Log: 2024-06-14 21:24:20,133 [wrapper] pilotpid: 6502
2024-06-14 23:24:20 (1134358): Guest Log: 2024-06-14 21:24:20,135 [wrapper] Pilot exit status: 0
2024-06-14 23:24:20 (1134358): Guest Log: 2024-06-14 21:24:20,316 [wrapper] pandaids: 6229457079
2024-06-14 23:24:20 (1134358): Guest Log: 2024-06-14 21:24:20,335 [wrapper] cleanup supervisor_pilot 29388 6503
2024-06-14 23:24:20 (1134358): Guest Log: 2024-06-14 21:24:20,337 [wrapper] Test setup, not cleaning
2024-06-14 23:24:20 (1134358): Guest Log: 2024-06-14 21:24:20,339 [wrapper] ==== wrapper stdout END ====
2024-06-14 23:24:20 (1134358): Guest Log: 2024-06-14 21:24:20,341 [wrapper] ==== wrapper stderr END ====
2024-06-14 23:24:20 (1134358): Guest Log: 2024-06-14 21:24:20,345 [wrapper] apfmon messages muted
2024-06-14 23:24:20 (1134358): Guest Log:  *** Error codes and diagnostics ***
2024-06-14 23:24:20 (1134358): Guest Log:     "exeErrorCode": 0,
2024-06-14 23:24:20 (1134358): Guest Log:     "exeErrorDiag": "",
2024-06-14 23:24:20 (1134358): Guest Log:     "pilotErrorCode": 0,
2024-06-14 23:24:20 (1134358): Guest Log:     "pilotErrorDiag": "",
2024-06-14 23:24:20 (1134358): Guest Log:  *** Listing of results directory ***
2024-06-14 23:24:20 (1134358): Guest Log: total 342152
2024-06-14 23:24:20 (1134358): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 13 14:01 pilot3.tar.gz
2024-06-14 23:24:20 (1134358): Guest Log: -rwx------. 1 atlas atlas     32308 Jun 13 14:56 runpilot2-wrapper.sh
2024-06-14 23:24:20 (1134358): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 13 14:56 queuedata.json
2024-06-14 23:24:20 (1134358): Guest Log: -rw-r--r--. 1 atlas atlas     17537 Jun 14 14:10 start_atlas.sh
2024-06-14 23:24:20 (1134358): Guest Log: -rw-r--r--. 1 atlas atlas    482529 Jun 14 14:10 input.tar.gz
2024-06-14 23:24:20 (1134358): Guest Log: -rw-r--r--. 1 atlas atlas      6889 Jun 14 14:10 init_data.xml
2024-06-14 23:24:20 (1134358): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 14 14:10 EVNT.38776210._000727.pool.root.1 -> /data/./ATLAS.root_0
2024-06-14 23:24:20 (1134358): Guest Log: -rw-r--r--. 1 atlas atlas      2647 Jun 14 14:11 pandaJob.out
2024-06-14 23:24:20 (1134358): Guest Log: -rw-------. 1 atlas atlas       424 Jun 14 14:11 setup.sh.local
2024-06-14 23:24:20 (1134358): Guest Log: -rw-------. 1 atlas atlas   1020540 Jun 14 14:11 agis_schedconf.cvmfs.json
2024-06-14 23:24:20 (1134358): Guest Log: -rw-------. 1 atlas atlas   1316805 Jun 14 14:11 cric_ddmendpoints.json
2024-06-14 23:24:20 (1134358): Guest Log: drwx------. 4 atlas atlas      4096 Jun 14 14:11 pilot3
2024-06-14 23:24:20 (1134358): Guest Log: -rw-------. 1 atlas atlas 342912896 Jun 14 21:23 HITS.38921013._029752.pool.root.1
2024-06-14 23:24:20 (1134358): Guest Log: -rw-------. 1 atlas atlas        95 Jun 14 21:23 pilot_heartbeat.json
2024-06-14 23:24:20 (1134358): Guest Log: -rw-------. 1 atlas atlas      1031 Jun 14 21:23 memory_monitor_summary.json
2024-06-14 23:24:20 (1134358): Guest Log: -rw-------. 1 atlas atlas         0 Jun 14 21:23 agis_ddmendpoints.agis.ALL.json
2024-06-14 23:24:20 (1134358): Guest Log: -rw-------. 1 atlas atlas    411975 Jun 14 21:23 log.38921013._029752.job.log.tgz.1
2024-06-14 23:24:20 (1134358): Guest Log: -rw-------. 1 atlas atlas      7735 Jun 14 21:24 heartbeat.json
2024-06-14 23:24:20 (1134358): Guest Log: -rw-------. 1 atlas atlas      4271 Jun 14 21:24 pilotlog.txt
2024-06-14 23:24:20 (1134358): Guest Log: -rw-------. 1 atlas atlas   1582200 Jun 14 21:24 log.38921013._029752.job.log.1
2024-06-14 23:24:20 (1134358): Guest Log: -rw-------. 1 atlas atlas       357 Jun 14 21:24 output.list
2024-06-14 23:24:20 (1134358): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 14 21:24 runtime_log
2024-06-14 23:24:20 (1134358): Guest Log: -rw-------. 1 atlas atlas   2017280 Jun 14 21:24 result.tar.gz
2024-06-14 23:24:20 (1134358): Guest Log: -rw-------. 1 atlas atlas       679 Jun 14 21:24 YGZNDmZ30b5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmIwdKDmsx3vln.diag
2024-06-14 23:24:20 (1134358): Guest Log: -rw-r--r--. 1 atlas atlas     11024 Jun 14 21:24 runtime_log.err
2024-06-14 23:24:20 (1134358): Guest Log: Looking for outputfile HITS.38921013._029752.pool.root.1
2024-06-14 23:24:20 (1134358): Guest Log: HITS file was successfully produced
2024-06-14 23:24:20 (1134358): Guest Log: -rw-------. 1 atlas atlas 342912896 Jun 14 21:23 /home/atlas/RunAtlas/HITS.38921013._029752.pool.root.1
2024-06-14 23:24:20 (1134358): Guest Log: Successfully finished the ATLAS job!
2024-06-14 23:24:20 (1134358): Guest Log: Copying the results back to the shared directory!
2024-06-14 23:24:20 (1134358): Guest Log:  *** Contents of shared directory: ***
2024-06-14 23:24:20 (1134358): Guest Log: total 532720
2024-06-14 23:24:20 (1134358): Guest Log: -rw-r--r--. 1 root root 542967507 Jun 14 14:10 ATLAS.root_0
2024-06-14 23:24:20 (1134358): Guest Log: -rw-r--r--. 1 root root      6889 Jun 14 14:10 init_data.xml
2024-06-14 23:24:20 (1134358): Guest Log: -rw-r--r--. 1 root root    482529 Jun 14 14:10 input.tar.gz
2024-06-14 23:24:20 (1134358): Guest Log: -rw-r--r--. 1 root root   2017280 Jun 14  2024 result.tar.gz
2024-06-14 23:24:20 (1134358): Guest Log: -rw-r--r--. 1 root root     17537 Jun 14 14:10 start_atlas.sh
2024-06-14 23:24:20 (1134358): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-14 23:24:20 (1134358): VM Completion File Detected.
2024-06-14 23:24:20 (1134358): Powering off VM.
2024-06-14 23:24:21 (1134358): Successfully stopped VM.
2024-06-14 23:24:21 (1134358): Deregistering VM. (boinc_6b07b54705520038, slot#0)
2024-06-14 23:24:21 (1134358): Removing network bandwidth throttle group from VM.
2024-06-14 23:24:21 (1134358): Removing VM from VirtualBox.
23:24:26 (1134358): called boinc_finish(0)

</stderr_txt>
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