Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
08:37:05 (278367): wrapper (7.7.26015): starting
08:37:05 (278367): wrapper: running run_atlas (--nthreads 12)
[2024-06-14 08:37:05] Arguments: --nthreads 12
[2024-06-14 08:37:05] Threads: 12
[2024-06-14 08:37:05] Checking for CVMFS
[2024-06-14 08:37:06] Probing /cvmfs/atlas.cern.ch... OK
[2024-06-14 08:37:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-06-14 08:37:06] Running cvmfs_config stat atlas.cern.ch
[2024-06-14 08:37:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-06-14 08:37:06] 2.10.1.0 2817 212728 123172 133874 1 367 30636240 45568001 8567 130560 0 1147101888 99.749 743889017 17400 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2024-06-14 08:37:06] CVMFS is ok
[2024-06-14 08:37:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-14 08:37:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-14 08:37:06] Further information can be found at the LHC@home message board.
[2024-06-14 08:37:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-14 08:37:06] Checking for apptainer binary...
[2024-06-14 08:37:06] Using apptainer found in PATH at /usr/bin/apptainer
[2024-06-14 08:37:06] Running /usr/bin/apptainer --version
[2024-06-14 08:37:06] apptainer version 1.1.8-1.el7
[2024-06-14 08:37:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-14 08:37:07] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0135.triumf.lcg
[2024-06-14 08:37:07] apptainer works
[2024-06-14 08:37:07] Set ATHENA_PROC_NUMBER=12
[2024-06-14 08:37:07] Set ATHENA_CORE_NUMBER=12
[2024-06-14 08:37:07] Starting ATLAS job with PandaID=6229400127
[2024-06-14 08:37:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-14 20:00:36]  *** The last 200 lines of the pilot log: ***
[2024-06-14 20:00:37] 2024-06-15 02:59:48,360 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-06-14 20:00:37] 2024-06-15 02:59:50,868 | INFO     | monitor loop #2328: job 0:6229400127 is in state 'finished'
[2024-06-14 20:00:37] 2024-06-15 02:59:50,869 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-06-14 20:00:37] 2024-06-15 02:59:53,374 | INFO     | monitor loop #2329: job 0:6229400127 is in state 'finished'
[2024-06-14 20:00:37] 2024-06-15 02:59:53,375 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-06-14 20:00:37] 2024-06-15 02:59:54,533 | INFO     | CPU arch script returned: x86-64-v4
[2024-06-14 20:00:37] 2024-06-15 02:59:54,533 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6229400127/memory_monitor_summary.json (trf name=prmon)
[2024-06-14 20:00:37] 2024-06-15 02:59:54,534 | INFO     | extracted standard info from prmon json
[2024-06-14 20:00:37] 2024-06-15 02:59:54,534 | INFO     | extracted standard memory fields from prmon json
[2024-06-14 20:00:37] 2024-06-15 02:59:54,534 | WARNING  | GPU info not found in prmon json
[2024-06-14 20:00:37] 2024-06-15 02:59:54,535 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-06-14 20:00:37] 2024-06-15 02:59:54,535 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-06-14 20:00:37] 2024-06-15 02:59:54,542 | INFO     | fitting pss+swap vs Time
[2024-06-14 20:00:37] 2024-06-15 02:59:54,543 | INFO     | model: linear, x: [1718379466.0, 1718379537.0, 1718379588.0, 1718379649.0, 1718379710.0, 1718379772.0, 1718379832.0, 1718379894.0, 1718379955.0, 1718380023.0, 1718
[2024-06-14 20:00:37] 2024-06-15 02:59:54,543 | INFO     | sum of square deviations: 93256153511.36693
[2024-06-14 20:00:37] 2024-06-15 02:59:54,551 | INFO     | sum of deviations: 235223367937.30765
[2024-06-14 20:00:37] 2024-06-15 02:59:54,551 | INFO     | mean x: 1718399873.1373134
[2024-06-14 20:00:37] 2024-06-15 02:59:54,551 | INFO     | mean y: 2703914.6597014926
[2024-06-14 20:00:37] 2024-06-15 02:59:54,551 | INFO     | -- intersect: -4331678218.881035
[2024-06-14 20:00:37] 2024-06-15 02:59:54,551 | INFO     | intersect: -4331678218.881035
[2024-06-14 20:00:37] 2024-06-15 02:59:54,552 | INFO     | chi2: 10.504283418237085
[2024-06-14 20:00:37] 2024-06-15 02:59:54,552 | INFO     | model: linear, x: [1718379466.0, 1718379537.0, 1718379588.0, 1718379649.0, 1718379710.0, 1718379772.0, 1718379832.0, 1718379894.0, 1718379955.0, 1718380023.0, 1718
[2024-06-14 20:00:37] 2024-06-15 02:59:54,553 | INFO     | sum of square deviations: 91183922346.5357
[2024-06-14 20:00:37] 2024-06-15 02:59:54,561 | INFO     | sum of deviations: 480919978842.5626
[2024-06-14 20:00:37] 2024-06-15 02:59:54,561 | INFO     | mean x: 1718399720.643609
[2024-06-14 20:00:37] 2024-06-15 02:59:54,561 | INFO     | mean y: 2721995.732330827
[2024-06-14 20:00:37] 2024-06-15 02:59:54,561 | INFO     | -- intersect: -9060419137.353477
[2024-06-14 20:00:37] 2024-06-15 02:59:54,561 | INFO     | intersect: -9060419137.353477
[2024-06-14 20:00:37] 2024-06-15 02:59:54,562 | INFO     | chi2: 6.499557921777588
[2024-06-14 20:00:37] 2024-06-15 02:59:54,562 | INFO     | current chi2=6.499557921777588 (change=38.12469006221467 %)
[2024-06-14 20:00:37] 2024-06-15 02:59:54,562 | INFO     | model: linear, x: [1718379466.0, 1718379537.0, 1718379588.0, 1718379649.0, 1718379710.0, 1718379772.0, 1718379832.0, 1718379894.0, 1718379955.0, 1718380023.0, 1718
[2024-06-14 20:00:37] 2024-06-15 02:59:54,563 | INFO     | sum of square deviations: 89142499138.03638
[2024-06-14 20:00:37] 2024-06-15 02:59:54,570 | INFO     | sum of deviations: 526747872547.47235
[2024-06-14 20:00:37] 2024-06-15 02:59:54,570 | INFO     | mean x: 1718399568.1454546
[2024-06-14 20:00:37] 2024-06-15 02:59:54,571 | INFO     | mean y: 2725396.3075757576
[2024-06-14 20:00:37] 2024-06-15 02:59:54,571 | INFO     | -- intersect: -10151391051.62234
[2024-06-14 20:00:37] 2024-06-15 02:59:54,571 | INFO     | intersect: -10151391051.62234
[2024-06-14 20:00:37] 2024-06-15 02:59:54,571 | INFO     | chi2: 5.679186347505462
[2024-06-14 20:00:37] 2024-06-15 02:59:54,571 | INFO     | current chi2=5.679186347505462 (change=12.621959587795459 %)
[2024-06-14 20:00:37] 2024-06-15 02:59:54,571 | INFO     | right removable region: 659
[2024-06-14 20:00:37] 2024-06-15 02:59:54,572 | INFO     | model: linear, x: [1718379772.0, 1718379832.0, 1718379894.0, 1718379955.0, 1718380023.0, 1718380084.0, 1718380146.0, 1718380198.0, 1718380259.0, 1718380320.0, 1718
[2024-06-14 20:00:37] 2024-06-15 02:59:54,572 | INFO     | sum of square deviations: 91183622766.82106
[2024-06-14 20:00:37] 2024-06-15 02:59:54,580 | INFO     | sum of deviations: 42751781035.66378
[2024-06-14 20:00:37] 2024-06-15 02:59:54,580 | INFO     | mean x: 1718400025.6421053
[2024-06-14 20:00:37] 2024-06-15 02:59:54,580 | INFO     | mean y: 2718067.0406015036
[2024-06-14 20:00:37] 2024-06-15 02:59:54,581 | INFO     | -- intersect: -802960183.0525924
[2024-06-14 20:00:37] 2024-06-15 02:59:54,581 | INFO     | intersect: -802960183.0525924
[2024-06-14 20:00:37] 2024-06-15 02:59:54,581 | INFO     | chi2: 7.907247999897025
[2024-06-14 20:00:37] 2024-06-15 02:59:54,581 | INFO     | current chi2=7.907247999897025 (change=24.723584798094834 %)
[2024-06-14 20:00:37] 2024-06-15 02:59:54,581 | INFO     | left removable region: 10
[2024-06-14 20:00:37] 2024-06-15 02:59:54,582 | INFO     | model: linear, x: [1718380084.0, 1718380146.0, 1718380198.0, 1718380259.0, 1718380320.0, 1718380381.0, 1718380442.0, 1718380503.0, 1718380564.0, 1718380625.0, 1718
[2024-06-14 20:00:37] 2024-06-15 02:59:54,582 | INFO     | sum of square deviations: 84758878270.06152
[2024-06-14 20:00:37] 2024-06-15 02:59:54,592 | INFO     | sum of deviations: 183933599037.5241
[2024-06-14 20:00:37] 2024-06-15 02:59:54,592 | INFO     | mean x: 1718399842.6579354
[2024-06-14 20:00:37] 2024-06-15 02:59:54,592 | INFO     | mean y: 2751489.092449923
[2024-06-14 20:00:37] 2024-06-15 02:59:54,592 | INFO     | -- intersect: -3726314705.466094
[2024-06-14 20:00:37] 2024-06-15 02:59:54,592 | INFO     | intersect: -3726314705.466094
[2024-06-14 20:00:37] 2024-06-15 02:59:54,593 | INFO     | chi2: 1.485345883255585
[2024-06-14 20:00:37] 2024-06-15 02:59:54,593 | INFO     | -- intersect: -3726314705.466094
[2024-06-14 20:00:37] 2024-06-15 02:59:54,593 | INFO     | current memory leak: 2.17 B/s (using 649 data points, chi2=1.49)
[2024-06-14 20:00:37] 2024-06-15 02:59:54,597 | INFO     | ..............................
[2024-06-14 20:00:37] 2024-06-15 02:59:54,597 | INFO     | . Timing measurements:
[2024-06-14 20:00:37] 2024-06-15 02:59:54,597 | INFO     | . get job = 0 s
[2024-06-14 20:00:37] 2024-06-15 02:59:54,597 | INFO     | . initial setup = 2 s
[2024-06-14 20:00:37] 2024-06-15 02:59:54,597 | INFO     | . payload setup = 6 s
[2024-06-14 20:00:37] 2024-06-15 02:59:54,597 | INFO     | . stage-in = 0 s
[2024-06-14 20:00:37] 2024-06-15 02:59:54,597 | INFO     | . payload execution = 40836 s
[2024-06-14 20:00:37] 2024-06-15 02:59:54,597 | INFO     | . stage-out = 18 s
[2024-06-14 20:00:37] 2024-06-15 02:59:54,597 | INFO     | . log creation = 2 s
[2024-06-14 20:00:37] 2024-06-15 02:59:54,598 | INFO     | ..............................
[2024-06-14 20:00:37] 2024-06-15 02:59:55,123 | INFO     | 
[2024-06-14 20:00:37] 2024-06-15 02:59:55,124 | INFO     | job summary report
[2024-06-14 20:00:37] 2024-06-15 02:59:55,124 | INFO     | --------------------------------------------------
[2024-06-14 20:00:37] 2024-06-15 02:59:55,124 | INFO     | PanDA job id: 6229400127
[2024-06-14 20:00:37] 2024-06-15 02:59:55,124 | INFO     | task id: 38921007
[2024-06-14 20:00:37] 2024-06-15 02:59:55,124 | INFO     | errors: (none)
[2024-06-14 20:00:37] 2024-06-15 02:59:55,124 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-14 20:00:37] 2024-06-15 02:59:55,124 | INFO     | pilot state: finished 
[2024-06-14 20:00:37] 2024-06-15 02:59:55,124 | INFO     | transexitcode: 0
[2024-06-14 20:00:37] 2024-06-15 02:59:55,124 | INFO     | exeerrorcode: 0
[2024-06-14 20:00:37] 2024-06-15 02:59:55,124 | INFO     | exeerrordiag: 
[2024-06-14 20:00:37] 2024-06-15 02:59:55,124 | INFO     | exitcode: 0
[2024-06-14 20:00:37] 2024-06-15 02:59:55,124 | INFO     | exitmsg: OK
[2024-06-14 20:00:37] 2024-06-15 02:59:55,136 | INFO     | cpuconsumptiontime: 123868 s
[2024-06-14 20:00:37] 2024-06-15 02:59:55,136 | INFO     | nevents: 400
[2024-06-14 20:00:37] 2024-06-15 02:59:55,137 | INFO     | neventsw: 0
[2024-06-14 20:00:37] 2024-06-15 02:59:55,137 | INFO     | pid: 10939
[2024-06-14 20:00:37] 2024-06-15 02:59:55,137 | INFO     | pgrp: 10939
[2024-06-14 20:00:37] 2024-06-15 02:59:55,137 | INFO     | corecount: 12
[2024-06-14 20:00:37] 2024-06-15 02:59:55,137 | INFO     | event service: False
[2024-06-14 20:00:37] 2024-06-15 02:59:55,137 | INFO     | sizes: {0: 2378249, 1: 2379184, 5: 2379390, 11: 2379446, 40851: 2420859, 40878: 2429813, 40882: 2429997, 40939: 2430167}
[2024-06-14 20:00:37] 2024-06-15 02:59:55,137 | INFO     | --------------------------------------------------
[2024-06-14 20:00:37] 2024-06-15 02:59:55,137 | INFO     | 
[2024-06-14 20:00:37] 2024-06-15 02:59:55,137 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-06-14 20:00:37] 2024-06-15 02:59:55,330 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-14 20:00:37] 2024-06-15 02:59:55,331 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-14 20:00:37] 2024-06-15 02:59:55,331 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-14 20:00:37] 2024-06-15 02:59:55,331 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-14 20:00:37] 2024-06-15 02:59:55,331 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-14 20:00:37] 2024-06-15 02:59:55,331 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-14 20:00:37] 2024-06-15 02:59:55,331 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-14 20:00:37] 2024-06-15 02:59:55,331 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-14 20:00:37] 2024-06-15 02:59:55,331 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-14 20:00:37] 2024-06-15 02:59:55,331 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-14 20:00:37] 2024-06-15 02:59:55,331 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-14 20:00:37] 2024-06-15 02:59:55,331 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-14 20:00:37] 2024-06-15 02:59:55,331 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-14 20:00:37] 2024-06-15 02:59:55,331 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-14 20:00:37] 2024-06-15 02:59:55,332 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-14 20:00:37] 2024-06-15 02:59:55,332 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-14 20:00:37] 2024-06-15 02:59:55,332 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-14 20:00:37] 2024-06-15 02:59:55,332 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-14 20:00:37] 2024-06-15 02:59:55,332 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-14 20:00:37] 2024-06-15 02:59:55,332 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-14 20:00:37] 2024-06-15 02:59:55,332 | INFO     | job 6229400127 has completed (purged errors)
[2024-06-14 20:00:37] 2024-06-15 02:59:55,332 | INFO     | overall cleanup function is called
[2024-06-14 20:00:37] 2024-06-15 02:59:56,351 | INFO     | --- collectZombieJob: --- 10, [10939]
[2024-06-14 20:00:37] 2024-06-15 02:59:56,352 | INFO     | zombie collector waiting for pid 10939
[2024-06-14 20:00:37] 2024-06-15 02:59:56,352 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-14 20:00:37] 2024-06-15 02:59:57,358 | INFO     | collected zombie processes
[2024-06-14 20:00:37] 2024-06-15 02:59:57,359 | INFO     | will now attempt to kill all subprocesses of pid=10939
[2024-06-14 20:00:37] 2024-06-15 02:59:58,784 | INFO     | process IDs to be killed: [10939] (in reverse order)
[2024-06-14 20:00:37] 2024-06-15 03:00:01,464 | WARNING  | found no corresponding commands to process id(s)
[2024-06-14 20:00:37] 2024-06-15 03:00:01,465 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-14 20:00:37] 2024-06-15 03:00:01,502 | INFO     | did not find any defunct processes belonging to 10939
[2024-06-14 20:00:37] 2024-06-15 03:00:01,530 | INFO     | did not find any defunct processes belonging to 10939
[2024-06-14 20:00:37] 2024-06-15 03:00:01,530 | INFO     | ready for new job
[2024-06-14 20:00:37] 2024-06-15 03:00:01,530 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-14 20:00:37] 2024-06-15 03:00:01,534 | INFO     | *************************************
[2024-06-14 20:00:37] 2024-06-15 03:00:01,534 | INFO     | ***  PanDA Pilot version 3.7.7.3  ***
[2024-06-14 20:00:37] 2024-06-15 03:00:01,534 | INFO     | *************************************
[2024-06-14 20:00:37] 2024-06-15 03:00:01,534 | INFO     | 
[2024-06-14 20:00:37] 2024-06-15 03:00:01,548 | INFO     | architecture information:
[2024-06-14 20:00:37] 2024-06-15 03:00:01,563 | INFO     | executing command: cat /etc/os-release
[2024-06-14 20:00:37] 2024-06-15 03:00:01,600 | INFO     | cat /etc/os-release:
[2024-06-14 20:00:37] NAME="CentOS Linux"
[2024-06-14 20:00:37] VERSION="7 (Core)"
[2024-06-14 20:00:37] ID="centos"
[2024-06-14 20:00:37] ID_LIKE="rhel fedora"
[2024-06-14 20:00:37] VERSION_ID="7"
[2024-06-14 20:00:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-14 20:00:37] ANSI_COLOR="0;31"
[2024-06-14 20:00:37] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-14 20:00:37] HOME_URL="https://www.centos.org/"
[2024-06-14 20:00:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-14 20:00:37] 
[2024-06-14 20:00:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-14 20:00:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-14 20:00:37] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-14 20:00:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-14 20:00:37] 
[2024-06-14 20:00:37] 2024-06-15 03:00:01,600 | INFO     | *************************************
[2024-06-14 20:00:37] 2024-06-15 03:00:02,113 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-06-14 20:00:37] 2024-06-15 03:00:03,549 | INFO     | sufficient remaining disk space (1970772377600 B)
[2024-06-14 20:00:37] 2024-06-15 03:00:03,549 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-14 20:00:37] 2024-06-15 03:00:03,549 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-14 20:00:37] 2024-06-15 03:00:03,668 | INFO     | found 0 job(s) in 20 queues
[2024-06-14 20:00:37] 2024-06-15 03:00:03,669 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-14 20:00:37] 2024-06-15 03:00:03,669 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-14 20:00:37] 2024-06-15 03:00:03,740 | INFO     | all data control threads have been joined
[2024-06-14 20:00:37] 2024-06-15 03:00:03,797 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-14 20:00:37] 2024-06-15 03:00:03,957 | INFO     | all job control threads have been joined
[2024-06-14 20:00:37] 2024-06-15 03:00:04,162 | INFO     | all payload control threads have been joined
[2024-06-14 20:00:37] 2024-06-15 03:00:04,483 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-14 20:00:37] 2024-06-15 03:00:04,484 | INFO     | aborting loop
[2024-06-14 20:00:37] 2024-06-15 03:00:04,667 | INFO     | [job] retrieve thread has finished
[2024-06-14 20:00:37] 2024-06-15 03:00:04,746 | INFO     | [data] control thread has finished
[2024-06-14 20:00:37] 2024-06-15 03:00:04,805 | INFO     | [job] queue monitor thread has finished
[2024-06-14 20:00:37] 2024-06-15 03:00:04,963 | INFO     | [job] control thread has finished
[2024-06-14 20:00:37] 2024-06-15 03:00:05,084 | INFO     | [payload] validate_pre thread has finished
[2024-06-14 20:00:37] 2024-06-15 03:00:05,108 | INFO     | [job] create_data_payload thread has finished
[2024-06-14 20:00:37] 2024-06-15 03:00:05,146 | INFO     | [job] validate thread has finished
[2024-06-14 20:00:37] 2024-06-15 03:00:05,160 | INFO     | [payload] execute_payloads thread has finished
[2024-06-14 20:00:37] 2024-06-15 03:00:05,238 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-14 20:00:37] 2024-06-15 03:00:05,269 | INFO     | [payload] control thread has finished
[2024-06-14 20:00:37] 2024-06-15 03:00:05,319 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-14 20:00:37] 2024-06-15 03:00:05,404 | INFO     | [payload] validate_post thread has finished
[2024-06-14 20:00:37] 2024-06-15 03:00:05,489 | INFO     | [job] job monitor thread has finished
[2024-06-14 20:00:37] 2024-06-15 03:00:05,577 | INFO     | [payload] failed_post thread has finished
[2024-06-14 20:00:37] 2024-06-15 03:00:06,173 | INFO     | [data] copytool_in thread has finished
[2024-06-14 20:00:37] 2024-06-15 03:00:07,156 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-14 20:00:37] 2024-06-15 03:00:07,245 | INFO     | [data] copytool_out thread has finished
[2024-06-14 20:00:37] 2024-06-15 03:00:11,168 | INFO     | [data] queue_monitor thread has finished
[2024-06-14 20:00:37] 2024-06-15 03:00:12,610 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139767226046272)>', '<ExcThread(monitor, started 139766792173312)>']
[2024-06-14 20:00:37] 2024-06-15 03:00:12,727 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-14 20:00:37] 2024-06-15 03:00:12,728 | INFO     | [monitor] control thread has ended
[2024-06-14 20:00:37] 2024-06-15 03:00:17,636 | INFO     | all workflow threads have been joined
[2024-06-14 20:00:37] 2024-06-15 03:00:17,637 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-14 20:00:37] 2024-06-15 03:00:17,637 | INFO     | traces error code: 0
[2024-06-14 20:00:37] 2024-06-15 03:00:17,637 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-14 20:00:37] 2024-06-15 03:00:28,203 [wrapper] ==== pilot stdout END ====
[2024-06-14 20:00:37] 2024-06-15 03:00:28,306 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-14 20:00:37] 2024-06-15 03:00:28,500 [wrapper] pilotpid: 4468
[2024-06-14 20:00:37] 2024-06-15 03:00:28,766 [wrapper] Pilot exit status: 0
[2024-06-14 20:00:37] 2024-06-15 03:00:29,317 [wrapper] pandaids: 6229400127
[2024-06-14 20:00:37] 2024-06-15 03:00:32,852 [wrapper] cleanup supervisor_pilot 237090 4469
[2024-06-14 20:00:37] 2024-06-15 03:00:32,884 [wrapper] Test setup, not cleaning
[2024-06-14 20:00:37] 2024-06-15 03:00:32,972 [wrapper] ==== wrapper stdout END ====
[2024-06-14 20:00:37] 2024-06-15 03:00:33,026 [wrapper] ==== wrapper stderr END ====
[2024-06-14 20:00:37] 2024-06-15 03:00:33,089 [wrapper] apfmon messages muted
[2024-06-14 20:00:37]  *** Error codes and diagnostics ***
[2024-06-14 20:00:37]     "exeErrorCode": 0,
[2024-06-14 20:00:37]     "exeErrorDiag": "",
[2024-06-14 20:00:37]     "pilotErrorCode": 0,
[2024-06-14 20:00:37]     "pilotErrorDiag": "",
[2024-06-14 20:00:37]  *** Listing of results directory ***
[2024-06-14 20:00:37] total 924832
[2024-06-14 20:00:37] -rw-r--r-- 1 boinc boinc    469766 Jun 13 05:58 pilot3.tar.gz
[2024-06-14 20:00:37] -rw-r--r-- 1 boinc boinc      5654 Jun 13 06:32 queuedata.json
[2024-06-14 20:00:37] -rwx------ 1 boinc boinc     32308 Jun 13 06:35 runpilot2-wrapper.sh
[2024-06-14 20:00:37] -rw-r--r-- 1 boinc boinc       100 Jun 14 08:37 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-14 20:00:37] -rwxr-xr-x 1 boinc boinc      7986 Jun 14 08:37 run_atlas
[2024-06-14 20:00:37] -rw-r--r-- 1 boinc boinc       105 Jun 14 08:37 job.xml
[2024-06-14 20:00:37] -rw-r--r-- 1 boinc boinc      6624 Jun 14 08:37 init_data.xml
[2024-06-14 20:00:37] -rw-r--r-- 2 boinc boinc 579522236 Jun 14 08:37 EVNT.38776201._000487.pool.root.1
[2024-06-14 20:00:37] drwxrwx--x 2 boinc boinc      4096 Jun 14 08:37 shared
[2024-06-14 20:00:37] -rw-r--r-- 2 boinc boinc    482523 Jun 14 08:37 input.tar.gz
[2024-06-14 20:00:37] -rw-r--r-- 2 boinc boinc     17537 Jun 14 08:37 start_atlas.sh
[2024-06-14 20:00:37] -rw-r--r-- 1 boinc boinc         0 Jun 14 08:37 boinc_lockfile
[2024-06-14 20:00:37] -rw-r--r-- 1 boinc boinc      2632 Jun 14 08:37 pandaJob.out
[2024-06-14 20:00:37] -rw------- 1 boinc boinc       424 Jun 14 08:37 setup.sh.local
[2024-06-14 20:00:37] -rw------- 1 boinc boinc   1020548 Jun 14 08:37 agis_schedconf.cvmfs.json
[2024-06-14 20:00:37] -rw------- 1 boinc boinc   1316805 Jun 14 08:37 cric_ddmendpoints.json
[2024-06-14 20:00:37] drwx------ 4 boinc boinc      4096 Jun 14 08:37 pilot3
[2024-06-14 20:00:37] -rw------- 1 boinc boinc 354264604 Jun 14 19:51 HITS.38921007._038401.pool.root.1
[2024-06-14 20:00:37] -rw-r--r-- 1 boinc boinc       533 Jun 14 19:52 boinc_task_state.xml
[2024-06-14 20:00:37] -rw------- 1 boinc boinc      1081 Jun 14 19:58 memory_monitor_summary.json
[2024-06-14 20:00:37] -rw------- 1 boinc boinc         0 Jun 14 19:58 agis_ddmendpoints.agis.ALL.json
[2024-06-14 20:00:37] -rw------- 1 boinc boinc    715136 Jun 14 19:58 log.38921007._038401.job.log.tgz.1
[2024-06-14 20:00:37] -rw------- 1 boinc boinc        95 Jun 14 19:59 pilot_heartbeat.json
[2024-06-14 20:00:37] -rw------- 1 boinc boinc      7792 Jun 14 19:59 heartbeat.json
[2024-06-14 20:00:37] -rw------- 1 boinc boinc      4210 Jun 14 20:00 pilotlog.txt
[2024-06-14 20:00:37] -rw-r--r-- 1 boinc boinc      8192 Jun 14 20:00 boinc_mmap_file
[2024-06-14 20:00:37] -rw-r--r-- 1 boinc boinc        29 Jun 14 20:00 wrapper_checkpoint.txt
[2024-06-14 20:00:37] -rw------- 1 boinc boinc   4144309 Jun 14 20:00 log.38921007._038401.job.log.1
[2024-06-14 20:00:37] -rw------- 1 boinc boinc       357 Jun 14 20:00 output.list
[2024-06-14 20:00:37] -rw-r--r-- 1 boinc boinc       620 Jun 14 20:00 runtime_log
[2024-06-14 20:00:37] -rw------- 1 boinc boinc   4874240 Jun 14 20:00 result.tar.gz
[2024-06-14 20:00:37] -rw-r--r-- 1 boinc boinc     11287 Jun 14 20:00 runtime_log.err
[2024-06-14 20:00:37] -rw------- 1 boinc boinc       661 Jun 14 20:00 fJFNDmFnzb5n7Olcko1bjSoqABFKDmABFKDmOtvXDmZUoKDmSzmBTn.diag
[2024-06-14 20:00:37] -rw-r--r-- 1 boinc boinc     22002 Jun 14 20:00 stderr.txt
[2024-06-14 20:00:37] HITS file was successfully produced:
[2024-06-14 20:00:37] -rw------- 1 boinc boinc 354264604 Jun 14 19:51 shared/HITS.pool.root.1
[2024-06-14 20:00:37]  *** Contents of shared directory: ***
[2024-06-14 20:00:37] total 917164
[2024-06-14 20:00:37] -rw-r--r-- 2 boinc boinc 579522236 Jun 14 08:37 ATLAS.root_0
[2024-06-14 20:00:37] -rw-r--r-- 2 boinc boinc    482523 Jun 14 08:37 input.tar.gz
[2024-06-14 20:00:37] -rw-r--r-- 2 boinc boinc     17537 Jun 14 08:37 start_atlas.sh
[2024-06-14 20:00:37] -rw------- 1 boinc boinc 354264604 Jun 14 19:51 HITS.pool.root.1
[2024-06-14 20:00:37] -rw------- 1 boinc boinc   4874240 Jun 14 20:00 result.tar.gz
20:00:44 (278367): run_atlas exited; CPU time 122995.465878
20:00:44 (278367): called boinc_finish(0)

</stderr_txt>
]]>

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