Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-14 15:29:49 (766767): Detected: vboxwrapper 26206
2024-06-14 15:29:49 (766767): Detected: BOINC client v7.24.1
2024-06-14 15:29:49 (766767): Detected: VirtualBox VboxManage Interface (Version: 7.0.14)
2024-06-14 15:29:49 (766767): Successfully copied 'init_data.xml' to the shared directory.
2024-06-14 15:29:49 (766767): Create VM. (boinc_b30e5821025eb4f6, slot#0)
2024-06-14 15:29:49 (766767): Setting Memory Size for VM. (4400MB)
2024-06-14 15:29:49 (766767): Setting CPU Count for VM. (4)
2024-06-14 15:29:49 (766767): Setting Chipset Options for VM.
2024-06-14 15:29:49 (766767): Setting Graphics Controller Options for VM.
2024-06-14 15:29:50 (766767): Setting Boot Options for VM.
2024-06-14 15:29:50 (766767): Setting Network Configuration for NAT.
2024-06-14 15:29:50 (766767): Enabling VM Network Access.
2024-06-14 15:29:50 (766767): Disabling USB Support for VM.
2024-06-14 15:29:50 (766767): Disabling COM Port Support for VM.
2024-06-14 15:29:50 (766767): Disabling LPT Port Support for VM.
2024-06-14 15:29:50 (766767): Disabling Audio Support for VM.
2024-06-14 15:29:50 (766767): Disabling Clipboard Support for VM.
2024-06-14 15:29:50 (766767): Disabling Drag and Drop Support for VM.
2024-06-14 15:29:51 (766767): Adding storage controller(s) to VM.
2024-06-14 15:29:51 (766767): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-14 15:29:52 (766767): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-14 15:29:53 (766767): forwarding host port 51233 to guest port 80
2024-06-14 15:29:53 (766767): Enabling remote desktop for VM.
2024-06-14 15:29:53 (766767): Required extension pack not installed, remote desktop not enabled.
2024-06-14 15:29:53 (766767): Enabling shared directory for VM.
2024-06-14 15:29:53 (766767): Starting VM using VBoxManage interface. (boinc_b30e5821025eb4f6, slot#0)
2024-06-14 15:29:54 (766767): Successfully started VM. (PID = '767025')
2024-06-14 15:29:54 (766767): Reporting VM Process ID to BOINC.
2024-06-14 15:29:54 (766767): Guest Log: BIOS: VirtualBox 7.0.14
2024-06-14 15:29:54 (766767): Guest Log: CPUID EDX: 0x178bfbff
2024-06-14 15:29:54 (766767): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-14 15:29:54 (766767): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-14 15:29:54 (766767): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-14 15:29:54 (766767): Detected: Web Application Enabled (http://localhost:51233)
2024-06-14 15:29:54 (766767): Preference change detected
2024-06-14 15:29:54 (766767): Setting CPU throttle for VM. (50%)
2024-06-14 15:29:54 (766767): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-14 15:29:56 (766767): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-14 15:29:56 (766767): Guest Log: BIOS: Booting from Hard Disk...
2024-06-14 15:30:01 (766767): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-14 15:30:01 (766767): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-14 15:30:01 (766767): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-14 15:30:01 (766767): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-14 15:30:01 (766767): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-14 15:30:01 (766767): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-14 15:30:01 (766767): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-14 15:30:01 (766767): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-14 15:30:01 (766767): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-14 15:30:01 (766767): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-14 15:30:01 (766767): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-14 15:30:01 (766767): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-14 15:30:01 (766767): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-14 15:30:01 (766767): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-14 15:30:01 (766767): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-14 15:30:01 (766767): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-14 15:30:01 (766767): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-14 15:30:01 (766767): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-14 15:30:01 (766767): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-14 15:30:01 (766767): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-14 15:30:01 (766767): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-14 15:30:01 (766767): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-14 15:30:01 (766767): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-14 15:30:01 (766767): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-14 15:30:01 (766767): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-14 15:30:01 (766767): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-14 15:30:01 (766767): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-14 15:30:01 (766767): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-14 15:30:01 (766767): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-14 15:30:01 (766767): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-14 15:30:01 (766767): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-14 15:30:01 (766767): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-14 15:30:10 (766767): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-14 15:30:10 (766767): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-14 15:30:30 (766767): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-14 15:30:30 (766767): Guest Log: 00:00:00.000199 main     Log opened 2024-06-14T13:30:28.953632000Z
2024-06-14 15:30:30 (766767): Guest Log: 00:00:00.000325 main     OS Product: Linux
2024-06-14 15:30:30 (766767): Guest Log: 00:00:00.000364 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-14 15:30:30 (766767): Guest Log: 00:00:00.000393 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-14 15:30:30 (766767): Guest Log: 00:00:00.000422 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-14 15:30:30 (766767): Guest Log: 00:00:00.000423 main     Process ID: 1296
2024-06-14 15:30:30 (766767): Guest Log: 00:00:00.000424 main     Package type: LINUX_64BITS_GENERIC
2024-06-14 15:30:30 (766767): Guest Log: 00:00:00.003509 main     5.2.32 r132073 started. Verbose level = 0
2024-06-14 15:30:31 (766767): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-14 15:30:31 (766767): Guest Log: [INFO] Mounting shared directory
2024-06-14 15:30:31 (766767): Guest Log: [INFO] Checking for init_data.xml
2024-06-14 15:30:35 (766767): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-14 15:30:35 (766767): Guest Log: [INFO] Detected branch: prod
2024-06-14 15:30:35 (766767): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-14 15:30:35 (766767): Guest Log: Copying input files
2024-06-14 15:30:45 (766767): Guest Log: Copied input files into RunAtlas.
2024-06-14 15:30:45 (766767): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-06-14 15:30:45 (766767): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-06-14 15:30:45 (766767): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-06-14 15:30:45 (766767): Guest Log: Further information can be found at the LHC@home message board.
2024-06-14 15:30:53 (766767): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-14 15:30:54 (766767): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-14 15:30:54 (766767): Guest Log: 2.6.3.0 1571 0 30184 133870 4 1 3117205 4096000 0 65024 0 0 n/a 1 4 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
2024-06-14 15:30:57 (766767): Guest Log: copied the webapp to /var/www
2024-06-14 15:30:57 (766767): Guest Log: ATHENA_PROC_NUMBER=4
2024-06-14 15:30:57 (766767): Guest Log: ATHENA_CORE_NUMBER=4
2024-06-14 15:30:57 (766767): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-14 15:30:57 (766767): Guest Log:  *** Starting ATLAS job. (PandaID=6229399779 taskID=38921007) ***
2024-06-14 17:08:55 (766767): Status Report: Elapsed Time: '6000.000000'
2024-06-14 17:08:55 (766767): Status Report: CPU Time: '10440.720000'
2024-06-14 18:47:56 (766767): Status Report: Elapsed Time: '12000.000000'
2024-06-14 18:47:56 (766767): Status Report: CPU Time: '22776.870000'
2024-06-14 20:26:56 (766767): Status Report: Elapsed Time: '18000.000000'
2024-06-14 20:26:56 (766767): Status Report: CPU Time: '35134.350000'
2024-06-14 22:05:57 (766767): Status Report: Elapsed Time: '24000.000000'
2024-06-14 22:05:57 (766767): Status Report: CPU Time: '47483.160000'
2024-06-14 23:41:57 (766767): Guest Log:  *** Job finished ***
2024-06-14 23:41:57 (766767): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-14 23:41:57 (766767): Guest Log: 2024-06-14 21:41:44,591 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2024-06-14 23:41:57 (766767): Guest Log: 2024-06-14 21:41:45,048 | INFO     | [job] queue monitor thread has finished
2024-06-14 23:41:57 (766767): Guest Log: 2024-06-14 21:41:48,657 | INFO     | [data] queue_monitor thread has finished
2024-06-14 23:41:57 (766767): Guest Log: 2024-06-14 21:41:50,699 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139923793913664)>', '<ExcThread(monitor, started 139923348760320)>']
2024-06-14 23:41:57 (766767): Guest Log: 2024-06-14 21:41:50,949 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-14 23:41:57 (766767): Guest Log: 2024-06-14 21:41:50,950 | INFO     | [monitor] control thread has ended
2024-06-14 23:41:57 (766767): Guest Log: 2024-06-14 21:41:55,722 | INFO     | all workflow threads have been joined
2024-06-14 23:41:57 (766767): Guest Log: 2024-06-14 21:41:55,722 | INFO     | end of generic workflow (traces error code: 0)
2024-06-14 23:41:57 (766767): Guest Log: 2024-06-14 21:41:55,723 | INFO     | traces error code: 0
2024-06-14 23:41:57 (766767): Guest Log: 2024-06-14 21:41:55,723 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-14 23:41:57 (766767): Guest Log: 2024-06-14 21:41:55,943 [wrapper] ==== pilot stdout END ====
2024-06-14 23:41:57 (766767): Guest Log: 2024-06-14 21:41:55,964 [wrapper] ==== wrapper stdout RESUME ====
2024-06-14 23:41:57 (766767): Guest Log: 2024-06-14 21:41:55,983 [wrapper] pilotpid: 6454
2024-06-14 23:41:57 (766767): Guest Log: 2024-06-14 21:41:56,001 [wrapper] Pilot exit status: 0
2024-06-14 23:41:57 (766767): Guest Log: 2024-06-14 21:41:56,194 [wrapper] pandaids: 6229399779
2024-06-14 23:41:57 (766767): Guest Log: 2024-06-14 21:41:56,259 [wrapper] cleanup supervisor_pilot 30215 6455
2024-06-14 23:41:57 (766767): Guest Log: 2024-06-14 21:41:56,265 [wrapper] Test setup, not cleaning
2024-06-14 23:41:57 (766767): Guest Log: 2024-06-14 21:41:56,268 [wrapper] ==== wrapper stdout END ====
2024-06-14 23:41:57 (766767): Guest Log: 2024-06-14 21:41:56,271 [wrapper] ==== wrapper stderr END ====
2024-06-14 23:41:57 (766767): Guest Log: 2024-06-14 21:41:56,305 [wrapper] apfmon messages muted
2024-06-14 23:41:57 (766767): Guest Log:  *** Error codes and diagnostics ***
2024-06-14 23:41:57 (766767): Guest Log:     "exeErrorCode": 0,
2024-06-14 23:41:57 (766767): Guest Log:     "exeErrorDiag": "",
2024-06-14 23:41:57 (766767): Guest Log:     "pilotErrorCode": 0,
2024-06-14 23:41:57 (766767): Guest Log:     "pilotErrorDiag": "",
2024-06-14 23:41:57 (766767): Guest Log:  *** Listing of results directory ***
2024-06-14 23:41:57 (766767): Guest Log: total 356348
2024-06-14 23:41:57 (766767): Guest Log: -rw-r--r--. 1 atlas atlas    469766 Jun 13 12:58 pilot3.tar.gz
2024-06-14 23:41:57 (766767): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 13 13:21 queuedata.json
2024-06-14 23:41:57 (766767): Guest Log: -rwx------. 1 atlas atlas     32308 Jun 13 13:24 runpilot2-wrapper.sh
2024-06-14 23:41:57 (766767): Guest Log: -rw-r--r--. 1 atlas atlas     17537 Jun 14 13:30 start_atlas.sh
2024-06-14 23:41:57 (766767): Guest Log: -rw-r--r--. 1 atlas atlas    482536 Jun 14 13:30 input.tar.gz
2024-06-14 23:41:57 (766767): Guest Log: -rw-r--r--. 1 atlas atlas      6658 Jun 14 13:30 init_data.xml
2024-06-14 23:41:57 (766767): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 14 13:30 EVNT.38776201._000438.pool.root.1 -> /data/./ATLAS.root_0
2024-06-14 23:41:57 (766767): Guest Log: -rw-r--r--. 1 atlas atlas      2630 Jun 14 13:30 pandaJob.out
2024-06-14 23:41:57 (766767): Guest Log: -rw-------. 1 atlas atlas       424 Jun 14 13:30 setup.sh.local
2024-06-14 23:41:57 (766767): Guest Log: -rw-------. 1 atlas atlas   1020540 Jun 14 13:31 agis_schedconf.cvmfs.json
2024-06-14 23:41:57 (766767): Guest Log: -rw-------. 1 atlas atlas   1316805 Jun 14 13:31 cric_ddmendpoints.json
2024-06-14 23:41:57 (766767): Guest Log: drwx------. 4 atlas atlas      4096 Jun 14 13:31 pilot3
2024-06-14 23:41:57 (766767): Guest Log: -rw-------. 1 atlas atlas 357198969 Jun 14 21:40 HITS.38921007._038352.pool.root.1
2024-06-14 23:41:57 (766767): Guest Log: -rw-------. 1 atlas atlas        95 Jun 14 21:41 pilot_heartbeat.json
2024-06-14 23:41:57 (766767): Guest Log: -rw-------. 1 atlas atlas      1033 Jun 14 21:41 memory_monitor_summary.json
2024-06-14 23:41:57 (766767): Guest Log: -rw-------. 1 atlas atlas         0 Jun 14 21:41 agis_ddmendpoints.agis.ALL.json
2024-06-14 23:41:57 (766767): Guest Log: -rw-------. 1 atlas atlas    382653 Jun 14 21:41 log.38921007._038352.job.log.tgz.1
2024-06-14 23:41:57 (766767): Guest Log: -rw-------. 1 atlas atlas      7743 Jun 14 21:41 heartbeat.json
2024-06-14 23:41:57 (766767): Guest Log: -rw-------. 1 atlas atlas      4271 Jun 14 21:41 pilotlog.txt
2024-06-14 23:41:57 (766767): Guest Log: -rw-------. 1 atlas atlas   1737562 Jun 14 21:41 log.38921007._038352.job.log.1
2024-06-14 23:41:57 (766767): Guest Log: -rw-------. 1 atlas atlas       357 Jun 14 21:41 output.list
2024-06-14 23:41:57 (766767): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 14 21:41 runtime_log
2024-06-14 23:41:57 (766767): Guest Log: -rw-------. 1 atlas atlas   2140160 Jun 14 21:41 result.tar.gz
2024-06-14 23:41:57 (766767): Guest Log: -rw-r--r--. 1 atlas atlas     11021 Jun 14 21:41 runtime_log.err
2024-06-14 23:41:57 (766767): Guest Log: -rw-------. 1 atlas atlas       678 Jun 14 21:41 c2BODmEczb5n9Rq4apOajLDm4fhM0noT9bVo2ijZDmeCTKDmmjehwn.diag
2024-06-14 23:41:57 (766767): Guest Log: Looking for outputfile HITS.38921007._038352.pool.root.1
2024-06-14 23:41:57 (766767): Guest Log: HITS file was successfully produced
2024-06-14 23:41:57 (766767): Guest Log: -rw-------. 1 atlas atlas 357198969 Jun 14 21:40 /home/atlas/RunAtlas/HITS.38921007._038352.pool.root.1
2024-06-14 23:41:57 (766767): Guest Log: Successfully finished the ATLAS job!
2024-06-14 23:41:57 (766767): Guest Log: Copying the results back to the shared directory!
2024-06-14 23:41:57 (766767): Guest Log:  *** Contents of shared directory: ***
2024-06-14 23:41:57 (766767): Guest Log: total 572660
2024-06-14 23:41:57 (766767): Guest Log: -rw-r--r--. 1 root root 583744652 Jun 14 13:29 ATLAS.root_0
2024-06-14 23:41:57 (766767): Guest Log: -rw-r--r--. 1 root root      6658 Jun 14 13:29 init_data.xml
2024-06-14 23:41:57 (766767): Guest Log: -rw-r--r--. 1 root root    482536 Jun 14 13:29 input.tar.gz
2024-06-14 23:41:57 (766767): Guest Log: -rw-r--r--. 1 root root   2140160 Jun 14 21:41 result.tar.gz
2024-06-14 23:41:57 (766767): Guest Log: -rw-r--r--. 1 root root     17537 Jun 14 13:29 start_atlas.sh
2024-06-14 23:41:57 (766767): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-14 23:41:57 (766767): VM Completion File Detected.
2024-06-14 23:41:57 (766767): Powering off VM.
2024-06-14 23:41:58 (766767): Successfully stopped VM.
2024-06-14 23:41:58 (766767): Deregistering VM. (boinc_b30e5821025eb4f6, slot#0)
2024-06-14 23:41:58 (766767): Removing network bandwidth throttle group from VM.
2024-06-14 23:41:58 (766767): Removing VM from VirtualBox.
23:42:03 (766767): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN