Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-18 08:12:38 (26804): Detected: vboxwrapper 26206
2024-06-18 08:12:38 (26804): Detected: BOINC client v8.0.2
2024-06-18 08:12:39 (26804): Detected: VirtualBox VboxManage Interface (Version: 7.0.4)
2024-06-18 08:12:39 (26804): Successfully copied 'init_data.xml' to the shared directory.
2024-06-18 08:12:40 (26804): Create VM. (boinc_336e48604758f989, slot#2)
2024-06-18 08:12:40 (26804): Setting Memory Size for VM. (4800MB)
2024-06-18 08:12:40 (26804): Setting CPU Count for VM. (8)
2024-06-18 08:12:41 (26804): Setting Chipset Options for VM.
2024-06-18 08:12:41 (26804): Setting Graphics Controller Options for VM.
2024-06-18 08:12:41 (26804): Setting Boot Options for VM.
2024-06-18 08:12:41 (26804): Setting Network Configuration for NAT.
2024-06-18 08:12:42 (26804): Enabling VM Network Access.
2024-06-18 08:12:42 (26804): Disabling USB Support for VM.
2024-06-18 08:12:42 (26804): Disabling COM Port Support for VM.
2024-06-18 08:12:43 (26804): Disabling LPT Port Support for VM.
2024-06-18 08:12:43 (26804): Disabling Audio Support for VM.
2024-06-18 08:12:43 (26804): Disabling Clipboard Support for VM.
2024-06-18 08:12:43 (26804): Disabling Drag and Drop Support for VM.
2024-06-18 08:12:44 (26804): Adding storage controller(s) to VM.
2024-06-18 08:12:44 (26804): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-18 08:12:44 (26804): Adding VirtualBox Guest Additions to VM.
2024-06-18 08:12:45 (26804): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-18 08:12:45 (26804): forwarding host port 60432 to guest port 80
2024-06-18 08:12:45 (26804): Enabling remote desktop for VM.
2024-06-18 08:12:46 (26804): Enabling shared directory for VM.
2024-06-18 08:12:46 (26804): Starting VM using VBoxManage interface. (boinc_336e48604758f989, slot#2)
2024-06-18 08:12:53 (26804): Successfully started VM. (PID = '19228')
2024-06-18 08:12:53 (26804): Reporting VM Process ID to BOINC.
2024-06-18 08:12:53 (26804): Guest Log: BIOS: VirtualBox 7.0.4
2024-06-18 08:12:53 (26804): Guest Log: CPUID EDX: 0x178bfbff
2024-06-18 08:12:53 (26804): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-18 08:12:53 (26804): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-18 08:12:53 (26804): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-18 08:12:53 (26804): Detected: Web Application Enabled (http://localhost:60432)
2024-06-18 08:12:53 (26804): Detected: Remote Desktop Enabled (localhost:60433)
2024-06-18 08:12:53 (26804): Preference change detected
2024-06-18 08:12:53 (26804): Setting CPU throttle for VM. (100%)
2024-06-18 08:12:54 (26804): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-18 08:12:55 (26804): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-18 08:12:55 (26804): Guest Log: BIOS: Booting from Hard Disk...
2024-06-18 08:12:58 (26804): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-18 08:12:58 (26804): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-18 08:12:58 (26804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-18 08:12:58 (26804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-18 08:12:58 (26804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-18 08:12:58 (26804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-18 08:12:58 (26804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-18 08:12:58 (26804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-18 08:12:58 (26804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-18 08:12:58 (26804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-18 08:12:58 (26804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-18 08:12:58 (26804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-18 08:12:58 (26804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-18 08:12:58 (26804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-18 08:12:58 (26804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-18 08:12:58 (26804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-18 08:12:58 (26804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-18 08:12:58 (26804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-18 08:12:58 (26804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-18 08:12:58 (26804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-18 08:12:58 (26804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-18 08:12:58 (26804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-18 08:12:58 (26804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-18 08:12:58 (26804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-18 08:12:58 (26804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-18 08:12:58 (26804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-18 08:12:58 (26804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-18 08:12:58 (26804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-18 08:12:58 (26804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-18 08:12:58 (26804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-18 08:12:58 (26804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-18 08:12:58 (26804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-18 08:13:02 (26804): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-18 08:13:02 (26804): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-18 08:13:06 (26804): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-18 08:13:06 (26804): Guest Log: 00:00:00.000148 main     Log opened 2024-06-18T08:13:05.500406000Z
2024-06-18 08:13:06 (26804): Guest Log: 00:00:00.000354 main     OS Product: Linux
2024-06-18 08:13:06 (26804): Guest Log: 00:00:00.000450 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-18 08:13:06 (26804): Guest Log: 00:00:00.000470 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-18 08:13:06 (26804): Guest Log: 00:00:00.000487 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-18 08:13:06 (26804): Guest Log: 00:00:00.000487 main     Process ID: 1365
2024-06-18 08:13:06 (26804): Guest Log: 00:00:00.000488 main     Package type: LINUX_64BITS_GENERIC
2024-06-18 08:13:06 (26804): Guest Log: 00:00:00.001082 main     5.2.32 r132073 started. Verbose level = 0
2024-06-18 08:13:07 (26804): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-18 08:13:07 (26804): Guest Log: [INFO] Mounting shared directory
2024-06-18 08:13:07 (26804): Guest Log: [INFO] Checking for init_data.xml
2024-06-18 08:13:16 (26804): Guest Log: 00:00:10.011388 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 682 338 000ns (GuestNow=1 718 694 796 821 129 000 ns GuestLast=1 718 698 385 503 467 000 ns fSetTimeLastLoop=true )
2024-06-18 08:14:09 (26804): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-18 08:14:09 (26804): Guest Log: [INFO] Detected branch: prod
2024-06-18 08:14:10 (26804): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-18 08:14:10 (26804): Guest Log: Copying input files
2024-06-18 08:14:13 (26804): Guest Log: Copied input files into RunAtlas.
2024-06-18 08:14:13 (26804): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-06-18 08:14:13 (26804): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-06-18 08:14:13 (26804): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-06-18 08:14:13 (26804): Guest Log: Further information can be found at the LHC@home message board.
2024-06-18 08:14:36 (26804): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-18 08:14:37 (26804): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-18 08:14:37 (26804): Guest Log: 2.6.3.0 1669 0 32328 134002 4 1 3119736 4096000 0 65024 0 0 n/a 1141 164 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2024-06-18 08:14:41 (26804): Guest Log: copied the webapp to /var/www
2024-06-18 08:14:41 (26804): Guest Log: ATHENA_PROC_NUMBER=8
2024-06-18 08:14:41 (26804): Guest Log: ATHENA_CORE_NUMBER=8
2024-06-18 08:14:42 (26804): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-18 08:14:42 (26804): Guest Log:  *** Starting ATLAS job. (PandaID=6228410723 taskID=38921007) ***
2024-06-18 08:23:43 (26804): VM state change detected. (old = 'running', new = 'paused')
2024-06-18 10:08:11 (26804): VM state change detected. (old = 'paused', new = 'running')
2024-06-18 10:08:16 (26804): Guest Log: 00:10:40.270853 timesync vgsvcTimeSyncWorker: Radical host time change: 6 278 483 000 000ns (HostNow=1 718 701 695 560 000 000 ns HostLast=1 718 695 417 077 000 000 ns)
2024-06-18 10:08:26 (26804): Guest Log: 00:10:50.271328 timesync vgsvcTimeSyncWorker: Radical guest time change: 6 278 481 410 000ns (GuestNow=1 718 701 705 561 003 000 ns GuestLast=1 718 695 427 079 593 000 ns fSetTimeLastLoop=true )
2024-06-18 11:37:26 (26804): Status Report: Elapsed Time: '6000.000000'
2024-06-18 11:37:26 (26804): Status Report: CPU Time: '35220.593750'
2024-06-18 13:17:29 (26804): Status Report: Elapsed Time: '12000.000000'
2024-06-18 13:17:29 (26804): Status Report: CPU Time: '83092.296875'
2024-06-18 14:03:12 (26804): Guest Log:  *** Job finished ***
2024-06-18 14:03:12 (26804): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-18 14:03:12 (26804): Guest Log: 2024-06-18 13:02:55,773 | INFO     | [data] copytool_out thread has finished
2024-06-18 14:03:12 (26804): Guest Log: 2024-06-18 13:02:56,307 | INFO     | [job] queue monitor thread has finished
2024-06-18 14:03:12 (26804): Guest Log: 2024-06-18 13:02:58,511 | INFO     | [data] queue_monitor thread has finished
2024-06-18 14:03:12 (26804): Guest Log: 2024-06-18 13:03:00,577 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140468429293376)>', '<ExcThread(monitor, started 140467576502016)>']
2024-06-18 14:03:12 (26804): Guest Log: 2024-06-18 13:03:00,962 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-18 14:03:12 (26804): Guest Log: 2024-06-18 13:03:00,963 | INFO     | [monitor] control thread has ended
2024-06-18 14:03:12 (26804): Guest Log: 2024-06-18 13:03:05,584 | INFO     | all workflow threads have been joined
2024-06-18 14:03:12 (26804): Guest Log: 2024-06-18 13:03:05,585 | INFO     | end of generic workflow (traces error code: 0)
2024-06-18 14:03:12 (26804): Guest Log: 2024-06-18 13:03:05,585 | INFO     | traces error code: 0
2024-06-18 14:03:12 (26804): Guest Log: 2024-06-18 13:03:05,585 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-18 14:03:12 (26804): Guest Log: 2024-06-18 13:03:05,657 [wrapper] ==== pilot stdout END ====
2024-06-18 14:03:12 (26804): Guest Log: 2024-06-18 13:03:05,661 [wrapper] ==== wrapper stdout RESUME ====
2024-06-18 14:03:12 (26804): Guest Log: 2024-06-18 13:03:05,666 [wrapper] pilotpid: 6647
2024-06-18 14:03:12 (26804): Guest Log: 2024-06-18 13:03:05,671 [wrapper] Pilot exit status: 0
2024-06-18 14:03:12 (26804): Guest Log: 2024-06-18 13:03:05,770 [wrapper] pandaids: 6228410723
2024-06-18 14:03:12 (26804): Guest Log: 2024-06-18 13:03:05,809 [wrapper] cleanup supervisor_pilot 18645 6648
2024-06-18 14:03:12 (26804): Guest Log: 2024-06-18 13:03:05,813 [wrapper] Test setup, not cleaning
2024-06-18 14:03:12 (26804): Guest Log: 2024-06-18 13:03:05,819 [wrapper] ==== wrapper stdout END ====
2024-06-18 14:03:12 (26804): Guest Log: 2024-06-18 13:03:05,824 [wrapper] ==== wrapper stderr END ====
2024-06-18 14:03:12 (26804): Guest Log: 2024-06-18 13:03:05,835 [wrapper] apfmon messages muted
2024-06-18 14:03:12 (26804): Guest Log:  *** Error codes and diagnostics ***
2024-06-18 14:03:12 (26804): Guest Log:     "exeErrorCode": 0,
2024-06-18 14:03:12 (26804): Guest Log:     "exeErrorDiag": "",
2024-06-18 14:03:12 (26804): Guest Log:     "pilotErrorCode": 0,
2024-06-18 14:03:12 (26804): Guest Log:     "pilotErrorDiag": "",
2024-06-18 14:03:12 (26804): Guest Log:  *** Listing of results directory ***
2024-06-18 14:03:12 (26804): Guest Log: total 357412
2024-06-18 14:03:12 (26804): Guest Log: -rw-r--r--. 1 atlas atlas    469443 Jun 12 08:02 pilot3.tar.gz
2024-06-18 14:03:12 (26804): Guest Log: -rwx------. 1 atlas atlas     32308 Jun 12 08:14 runpilot2-wrapper.sh
2024-06-18 14:03:12 (26804): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 12 08:14 queuedata.json
2024-06-18 14:03:12 (26804): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Jun 18 07:14 start_atlas.sh
2024-06-18 14:03:12 (26804): Guest Log: -rwxr-xr-x. 1 atlas atlas    482049 Jun 18 07:14 input.tar.gz
2024-06-18 14:03:12 (26804): Guest Log: -rwxr-xr-x. 1 atlas atlas      9115 Jun 18 07:14 init_data.xml
2024-06-18 14:03:12 (26804): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 18 07:14 EVNT.38776201._000966.pool.root.1 -> /data/./ATLAS.root_0
2024-06-18 14:03:12 (26804): Guest Log: -rw-r--r--. 1 atlas atlas      2631 Jun 18 07:14 pandaJob.out
2024-06-18 14:03:12 (26804): Guest Log: -rw-------. 1 atlas atlas       424 Jun 18 07:15 setup.sh.local
2024-06-18 14:03:12 (26804): Guest Log: -rw-------. 1 atlas atlas   1020175 Jun 18 07:22 agis_schedconf.cvmfs.json
2024-06-18 14:03:12 (26804): Guest Log: -rw-------. 1 atlas atlas   1316805 Jun 18 07:22 cric_ddmendpoints.json
2024-06-18 14:03:12 (26804): Guest Log: drwx------. 4 atlas atlas      4096 Jun 18 07:22 pilot3
2024-06-18 14:03:12 (26804): Guest Log: -rw-------. 1 atlas atlas 359315351 Jun 18 13:02 HITS.38921007._036898.pool.root.1
2024-06-18 14:03:12 (26804): Guest Log: -rw-------. 1 atlas atlas        97 Jun 18 13:02 pilot_heartbeat.json
2024-06-18 14:03:12 (26804): Guest Log: -rw-------. 1 atlas atlas      1029 Jun 18 13:02 memory_monitor_summary.json
2024-06-18 14:03:12 (26804): Guest Log: -rw-------. 1 atlas atlas         0 Jun 18 13:02 agis_ddmendpoints.agis.ALL.json
2024-06-18 14:03:12 (26804): Guest Log: -rw-------. 1 atlas atlas    390821 Jun 18 13:02 log.38921007._036898.job.log.tgz.1
2024-06-18 14:03:12 (26804): Guest Log: -rw-------. 1 atlas atlas      7727 Jun 18 13:02 heartbeat.json
2024-06-18 14:03:12 (26804): Guest Log: -rw-------. 1 atlas atlas      4271 Jun 18 13:03 pilotlog.txt
2024-06-18 14:03:12 (26804): Guest Log: -rw-------. 1 atlas atlas   1213220 Jun 18 13:03 log.38921007._036898.job.log.1
2024-06-18 14:03:12 (26804): Guest Log: -rw-------. 1 atlas atlas       357 Jun 18 13:03 output.list
2024-06-18 14:03:12 (26804): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 18 13:03 runtime_log
2024-06-18 14:03:12 (26804): Guest Log: -rw-------. 1 atlas atlas   1628160 Jun 18 13:03 result.tar.gz
2024-06-18 14:03:12 (26804): Guest Log: -rw-r--r--. 1 atlas atlas     10925 Jun 18 13:03 runtime_log.err
2024-06-18 14:03:12 (26804): Guest Log: -rw-------. 1 atlas atlas       646 Jun 18 13:03 nkHODmcIYb5n7Olcko1bjSoqABFKDmABFKDmOtvXDmBznKDmLqRybn.diag
2024-06-18 14:03:12 (26804): Guest Log: Looking for outputfile HITS.38921007._036898.pool.root.1
2024-06-18 14:03:12 (26804): Guest Log: HITS file was successfully produced
2024-06-18 14:03:12 (26804): Guest Log: -rw-------. 1 atlas atlas 359315351 Jun 18 13:02 /home/atlas/RunAtlas/HITS.38921007._036898.pool.root.1
2024-06-18 14:03:13 (26804): Guest Log: Successfully finished the ATLAS job!
2024-06-18 14:03:13 (26804): Guest Log: Copying the results back to the shared directory!
2024-06-18 14:03:14 (26804): Guest Log:  *** Contents of shared directory: ***
2024-06-18 14:03:14 (26804): Guest Log: total 924384
2024-06-18 14:03:14 (26804): Guest Log: -rwxrwxrwx. 1 root root 585101894 Jun 18 07:12 ATLAS.root_0
2024-06-18 14:03:14 (26804): Guest Log: -rwxrwxrwx. 1 root root 359315351 Jun 18  2024 HITS.pool.root.1
2024-06-18 14:03:14 (26804): Guest Log: -rwxrwxrwx. 1 root root      9115 Jun 18 07:12 init_data.xml
2024-06-18 14:03:14 (26804): Guest Log: -rwxrwxrwx. 1 root root    482049 Jun 12 12:41 input.tar.gz
2024-06-18 14:03:14 (26804): Guest Log: -rwxrwxrwx. 1 root root   1628160 Jun 18  2024 result.tar.gz
2024-06-18 14:03:14 (26804): Guest Log: -rwxrwxrwx. 1 root root     17537 Jun 12 12:41 start_atlas.sh
2024-06-18 14:03:14 (26804): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-18 14:03:14 (26804): VM Completion File Detected.
2024-06-18 14:03:14 (26804): Powering off VM.
2024-06-18 14:03:15 (26804): Successfully stopped VM.
2024-06-18 14:03:15 (26804): Deregistering VM. (boinc_336e48604758f989, slot#2)
2024-06-18 14:03:15 (26804): Removing network bandwidth throttle group from VM.
2024-06-18 14:03:15 (26804): Removing VM from VirtualBox.
14:03:21 (26804): called boinc_finish(0)

</stderr_txt>
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