Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-12 15:14:37 (4412): Detected: vboxwrapper 26206
2024-06-12 15:14:37 (4412): Detected: BOINC client v7.24.1
2024-06-12 15:14:41 (4412): Detected: VirtualBox VboxManage Interface (Version: 6.1.22)
2024-06-12 15:14:41 (4412): Successfully copied 'init_data.xml' to the shared directory.
2024-06-12 15:14:42 (4412): Create VM. (boinc_4084ccca044bdf88, slot#5)
2024-06-12 15:14:44 (4412): Setting Memory Size for VM. (4200MB)
2024-06-12 15:14:44 (4412): Setting CPU Count for VM. (2)
2024-06-12 15:14:45 (4412): Setting Chipset Options for VM.
2024-06-12 15:14:45 (4412): Setting Graphics Controller Options for VM.
2024-06-12 15:14:46 (4412): Setting Boot Options for VM.
2024-06-12 15:14:46 (4412): Setting Network Configuration for NAT.
2024-06-12 15:14:47 (4412): Enabling VM Network Access.
2024-06-12 15:14:47 (4412): Disabling USB Support for VM.
2024-06-12 15:14:48 (4412): Disabling COM Port Support for VM.
2024-06-12 15:14:48 (4412): Disabling LPT Port Support for VM.
2024-06-12 15:14:49 (4412): Disabling Audio Support for VM.
2024-06-12 15:14:49 (4412): Disabling Clipboard Support for VM.
2024-06-12 15:14:50 (4412): Disabling Drag and Drop Support for VM.
2024-06-12 15:14:50 (4412): Adding storage controller(s) to VM.
2024-06-12 15:14:51 (4412): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-12 15:14:53 (4412): Adding VirtualBox Guest Additions to VM.
2024-06-12 15:14:53 (4412): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-12 15:14:54 (4412): forwarding host port 64052 to guest port 80
2024-06-12 15:14:54 (4412): Enabling remote desktop for VM.
2024-06-12 15:14:54 (4412): Required extension pack not installed, remote desktop not enabled.
2024-06-12 15:14:54 (4412): Enabling shared directory for VM.
2024-06-12 15:14:55 (4412): Starting VM using VBoxManage interface. (boinc_4084ccca044bdf88, slot#5)
2024-06-12 15:15:06 (4412): Successfully started VM. (PID = '2080')
2024-06-12 15:15:06 (4412): Reporting VM Process ID to BOINC.
2024-06-12 15:15:06 (4412): Guest Log: BIOS: VirtualBox 6.1.22
2024-06-12 15:15:06 (4412): Guest Log: CPUID EDX: 0x178bfbff
2024-06-12 15:15:06 (4412): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-12 15:15:06 (4412): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-12 15:15:06 (4412): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-12 15:15:06 (4412): Detected: Web Application Enabled (http://localhost:64052)
2024-06-12 15:15:06 (4412): Preference change detected
2024-06-12 15:15:06 (4412): Setting CPU throttle for VM. (100%)
2024-06-12 15:15:07 (4412): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-12 15:15:08 (4412): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-12 15:15:08 (4412): Guest Log: BIOS: Booting from Hard Disk...
2024-06-12 15:15:45 (4412): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-12 15:15:45 (4412): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-12 15:15:45 (4412): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-12 15:15:45 (4412): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-12 15:15:45 (4412): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-12 15:15:45 (4412): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-12 15:15:45 (4412): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-12 15:15:45 (4412): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-12 15:15:45 (4412): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-12 15:15:45 (4412): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-12 15:15:45 (4412): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-12 15:15:45 (4412): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-12 15:15:45 (4412): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-12 15:15:45 (4412): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-12 15:15:46 (4412): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-12 15:15:46 (4412): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-12 15:15:46 (4412): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-12 15:15:46 (4412): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-12 15:15:46 (4412): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-12 15:15:46 (4412): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-12 15:15:46 (4412): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-12 15:15:46 (4412): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-12 15:15:46 (4412): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-12 15:15:46 (4412): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-12 15:15:46 (4412): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-12 15:15:46 (4412): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-12 15:15:46 (4412): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-12 15:15:46 (4412): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-12 15:15:46 (4412): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-12 15:15:46 (4412): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-12 15:15:46 (4412): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-12 15:15:46 (4412): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-12 15:16:11 (4412): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-12 15:16:11 (4412): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-12 15:17:07 (4412): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-12 15:17:07 (4412): Guest Log: 00:00:00.002904 main     Log opened 2024-06-12T15:17:05.504039000Z
2024-06-12 15:17:07 (4412): Guest Log: 00:00:00.004014 main     OS Product: Linux
2024-06-12 15:17:07 (4412): Guest Log: 00:00:00.004232 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-12 15:17:07 (4412): Guest Log: 00:00:00.004366 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-12 15:17:07 (4412): Guest Log: 00:00:00.004557 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-12 15:17:07 (4412): Guest Log: 00:00:00.004559 main     Process ID: 1256
2024-06-12 15:17:07 (4412): Guest Log: 00:00:00.004560 main     Package type: LINUX_64BITS_GENERIC
2024-06-12 15:17:07 (4412): Guest Log: 00:00:00.008652 main     5.2.32 r132073 started. Verbose level = 0
2024-06-12 15:17:09 (4412): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-12 15:17:09 (4412): Guest Log: [INFO] Mounting shared directory
2024-06-12 15:17:09 (4412): Guest Log: [INFO] Checking for init_data.xml
2024-06-12 15:17:20 (4412): Guest Log: 00:00:10.097915 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 154 573 000ns (GuestNow=1 718 198 237 437 086 000 ns GuestLast=1 718 205 425 591 659 000 ns fSetTimeLastLoop=true )
2024-06-12 15:18:56 (4412): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-12 15:18:56 (4412): Guest Log: [INFO] Detected branch: prod
2024-06-12 15:19:00 (4412): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-12 15:19:00 (4412): Guest Log: Copying input files
2024-06-12 15:19:27 (4412): Guest Log: Copied input files into RunAtlas.
2024-06-12 15:19:27 (4412): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-06-12 15:19:27 (4412): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-06-12 15:19:28 (4412): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-06-12 15:19:28 (4412): Guest Log: Further information can be found at the LHC@home message board.
2024-06-12 15:20:46 (4412): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-12 15:20:52 (4412): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-12 15:20:52 (4412): Guest Log: 2.6.3.0 1550 2 30232 133791 3 1 3119736 4096000 0 65024 0 0 n/a 1141 99 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-06-12 15:21:01 (4412): Guest Log: copied the webapp to /var/www
2024-06-12 15:21:01 (4412): Guest Log: ATHENA_PROC_NUMBER=2
2024-06-12 15:21:01 (4412): Guest Log: ATHENA_CORE_NUMBER=2
2024-06-12 15:21:08 (4412): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-12 15:21:08 (4412): Guest Log:  *** Starting ATLAS job. (PandaID=6228410408 taskID=38920987) ***
2024-06-12 15:42:55 (4412): Guest Log:  *** Job finished ***
2024-06-12 15:42:55 (4412): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-12 15:42:55 (4412): Guest Log: 2024-06-12 13:42:41,044 | INFO     | [job] control thread has finished
2024-06-12 15:42:55 (4412): Guest Log: 2024-06-12 13:42:41,496 | INFO     | [data] copytool_out thread has finished
2024-06-12 15:42:55 (4412): Guest Log: 2024-06-12 13:42:44,507 | INFO     | [data] queue_monitor thread has finished
2024-06-12 15:42:55 (4412): Guest Log: 2024-06-12 13:42:45,387 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140713839724352)>', '<ExcThread(monitor, started 140713547241216)>']
2024-06-12 15:42:57 (4412): Guest Log: 2024-06-12 13:42:45,655 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-12 15:42:57 (4412): Guest Log: 2024-06-12 13:42:45,655 | INFO     | [monitor] control thread has ended
2024-06-12 15:42:57 (4412): Guest Log: 2024-06-12 13:42:50,388 | INFO     | all workflow threads have been joined
2024-06-12 15:42:57 (4412): Guest Log: 2024-06-12 13:42:50,388 | INFO     | end of generic workflow (traces error code: 0)
2024-06-12 15:42:57 (4412): Guest Log: 2024-06-12 13:42:50,390 | INFO     | traces error code: 0
2024-06-12 15:42:57 (4412): Guest Log: 2024-06-12 13:42:50,392 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-12 15:42:57 (4412): Guest Log: 2024-06-12 13:42:50,857 [wrapper] ==== pilot stdout END ====
2024-06-12 15:42:57 (4412): Guest Log: 2024-06-12 13:42:50,900 [wrapper] ==== wrapper stdout RESUME ====
2024-06-12 15:42:57 (4412): Guest Log: 2024-06-12 13:42:50,951 [wrapper] pilotpid: 6500
2024-06-12 15:42:57 (4412): Guest Log: 2024-06-12 13:42:50,994 [wrapper] Pilot exit status: 0
2024-06-12 15:42:57 (4412): Guest Log: 2024-06-12 13:42:51,333 [wrapper] pandaids: 6228410408
2024-06-12 15:42:57 (4412): Guest Log: 2024-06-12 13:42:51,515 [wrapper] cleanup supervisor_pilot 30070 6501
2024-06-12 15:42:57 (4412): Guest Log: 2024-06-12 13:42:51,586 [wrapper] Test setup, not cleaning
2024-06-12 15:42:57 (4412): Guest Log: 2024-06-12 13:42:51,639 [wrapper] ==== wrapper stdout END ====
2024-06-12 15:42:57 (4412): Guest Log: 2024-06-12 13:42:51,680 [wrapper] ==== wrapper stderr END ====
2024-06-12 15:42:57 (4412): Guest Log: 2024-06-12 13:42:51,765 [wrapper] apfmon messages muted
2024-06-12 15:42:57 (4412): Guest Log:  *** Error codes and diagnostics ***
2024-06-12 15:42:57 (4412): Guest Log:     "exeErrorCode": 65,
2024-06-12 15:42:57 (4412): Guest Log:     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132)",
2024-06-12 15:42:57 (4412): Guest Log:     "pilotErrorCode": 1305,
2024-06-12 15:42:57 (4412): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute 2024-06-12 13:41:17,458 CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132)",
2024-06-12 15:42:57 (4412): Guest Log:  *** Listing of results directory ***
2024-06-12 15:42:57 (4412): Guest Log: total 3804
2024-06-12 15:42:57 (4412): Guest Log: -rw-r--r--. 1 atlas atlas  469443 Jun 12 07:11 pilot3.tar.gz
2024-06-12 15:42:57 (4412): Guest Log: -rwx------. 1 atlas atlas   32308 Jun 12 07:18 runpilot2-wrapper.sh
2024-06-12 15:42:57 (4412): Guest Log: -rw-r--r--. 1 atlas atlas    5654 Jun 12 07:18 queuedata.json
2024-06-12 15:42:57 (4412): Guest Log: -rwxr-xr-x. 1 atlas atlas    9099 Jun 12 13:19 init_data.xml
2024-06-12 15:42:57 (4412): Guest Log: -rwxr-xr-x. 1 atlas atlas  482051 Jun 12 13:19 input.tar.gz
2024-06-12 15:42:57 (4412): Guest Log: -rwxr-xr-x. 1 atlas atlas   17537 Jun 12 13:19 start_atlas.sh
2024-06-12 15:42:57 (4412): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Jun 12 13:19 EVNT.38776170._000744.pool.root.1 -> /data/./ATLAS.root_0
2024-06-12 15:42:57 (4412): Guest Log: -rw-r--r--. 1 atlas atlas    2620 Jun 12 13:21 pandaJob.out
2024-06-12 15:42:57 (4412): Guest Log: -rw-------. 1 atlas atlas     424 Jun 12 13:21 setup.sh.local
2024-06-12 15:42:57 (4412): Guest Log: -rw-------. 1 atlas atlas 1025412 Jun 12 13:27 agis_schedconf.cvmfs.json
2024-06-12 15:42:57 (4412): Guest Log: -rw-------. 1 atlas atlas       0 Jun 12 13:27 agis_ddmendpoints.agis.ALL.json
2024-06-12 15:42:57 (4412): Guest Log: -rw-------. 1 atlas atlas 1324173 Jun 12 13:27 cric_ddmendpoints.json
2024-06-12 15:42:57 (4412): Guest Log: drwx------. 4 atlas atlas    4096 Jun 12 13:27 pilot3
2024-06-12 15:42:57 (4412): Guest Log: -rw-------. 1 atlas atlas   49267 Jun 12 13:41 log.38920987._055101.job.log.tgz.1
2024-06-12 15:42:57 (4412): Guest Log: -rw-------. 1 atlas atlas      95 Jun 12 13:42 pilot_heartbeat.json
2024-06-12 15:42:57 (4412): Guest Log: -rw-------. 1 atlas atlas    8190 Jun 12 13:42 heartbeat.json
2024-06-12 15:42:57 (4412): Guest Log: -rw-------. 1 atlas atlas    4394 Jun 12 13:42 pilotlog.txt
2024-06-12 15:42:57 (4412): Guest Log: -rw-------. 1 atlas atlas  163094 Jun 12 13:42 log.38920987._055101.job.log.1
2024-06-12 15:42:57 (4412): Guest Log: -rw-------. 1 atlas atlas     188 Jun 12 13:42 output.list
2024-06-12 15:42:57 (4412): Guest Log: -rw-r--r--. 1 atlas atlas     620 Jun 12 13:42 runtime_log
2024-06-12 15:42:57 (4412): Guest Log: -rw-------. 1 atlas atlas  235520 Jun 12 13:42 result.tar.gz
2024-06-12 15:42:57 (4412): Guest Log: -rw-r--r--. 1 atlas atlas   10763 Jun 12 13:42 runtime_log.err
2024-06-12 15:42:57 (4412): Guest Log: -rw-------. 1 atlas atlas     633 Jun 12 13:42 FQ6KDmPQXb5n7Olcko1bjSoqABFKDmABFKDmOtvXDmLynKDmdF0gam.diag
2024-06-12 15:42:57 (4412): Guest Log: Looking for outputfile HITS.38920987._055101.pool.root.1
2024-06-12 15:42:57 (4412): Guest Log: No HITS file was produced
2024-06-12 15:42:57 (4412): Guest Log: Successfully finished the ATLAS job!
2024-06-12 15:42:57 (4412): Guest Log: Copying the results back to the shared directory!
2024-06-12 15:42:57 (4412): Guest Log:  *** Contents of shared directory: ***
2024-06-12 15:42:57 (4412): Guest Log: total 626840
2024-06-12 15:42:57 (4412): Guest Log: -rwxrwxrwx. 1 root root 641128039 Jun 12 13:14 ATLAS.root_0
2024-06-12 15:42:57 (4412): Guest Log: -rwxrwxrwx. 1 root root      9099 Jun 12 13:14 init_data.xml
2024-06-12 15:42:57 (4412): Guest Log: -rwxrwxrwx. 1 root root    482051 Jun 12 11:53 input.tar.gz
2024-06-12 15:42:57 (4412): Guest Log: -rwxrwxrwx. 1 root root    235520 Jun 12 13:42 result.tar.gz
2024-06-12 15:42:57 (4412): Guest Log: -rwxrwxrwx. 1 root root     17537 Jun 12 11:53 start_atlas.sh
2024-06-12 15:42:57 (4412): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-12 15:42:57 (4412): VM Completion File Detected.
2024-06-12 15:42:57 (4412): Powering off VM.
2024-06-12 15:43:02 (4412): Successfully stopped VM.
2024-06-12 15:43:02 (4412): Deregistering VM. (boinc_4084ccca044bdf88, slot#5)
2024-06-12 15:43:02 (4412): Removing network bandwidth throttle group from VM.
2024-06-12 15:43:03 (4412): Removing VM from VirtualBox.
15:43:10 (4412): called boinc_finish(0)

</stderr_txt>
]]>

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